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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_034001 | AC012176 | 64566123 | 1 | chr16 | NT_034001 | AC021674 | 64637186 | 1 | 12450 | 0 | 3333 | 15783 |
| S/G/Y/R/B/O |
NT_034001 | AC012176 | 64566123 | 1 | chr16 | NT_034001 | AC003977 | 64638634 | 3 | 20419 | 0 | 3336 | 23755 |
| S/G/Y/R/B/O |
NT_034001 | AC021674 | 64637186 | 1 | chr16 | NT_034001 | AC003977 | 64638634 | 3 | 97511 | 0 | 3695 | 101206 |
| S/G/Y/R/B/O |
NT_034001 | AC021674 | 64637186 | 1 | chr16 | NT_034001 | AC012172 | 64769125 | 3 | 46146 | 0 | 27224 | 73370 |
| S/G/Y/R/B/O |
NT_034001 | AC003977 | 64638634 | 3 | chr16 | NT_034001 | AC012172 | 64769125 | 3 | 77004 | 0 | 0 | 77004 |
| S/G/Y/R/B/O |
NT_034001 | AC003977 | 64638634 | 3 | chr16 | NT_034001 | AC012176 | 64566123 | 1 | 20419 | 0 | 3336 | 23755 |
| S/G/Y/R/B/O |
NT_034001 | AC012172 | 64769125 | 3 | chr16 | NT_034001 | AC009085 | 64826365 | 3 | 17164 | 0 | 0 | 17164 |
| S/G/Y/R/B/O |
NT_034001 | AC012172 | 64769125 | 3 | chr16 | NT_034001 | AC021674 | 64637186 | 1 | 46146 | 0 | 27224 | 73370 |
| S/G/Y/R/B/O |
NT_034001 | AC009085 | 64826365 | 3 | chr16 | NT_034001 | AC090551 | 64965161 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_034001 | AC009085 | 64826365 | 3 | chr16 | NT_034001 | AC092126 | 65044169 | 1 | 36932 | 4808 | 14295 | 56035 |
| S/G/Y/R/B/O |
NT_034001 | AC009085 | 64826365 | 3 |   |   | AC092124 | 64769125 | 1 | 21550 | 5686 | 23622 | 50858 |
| S/G/Y/R/B/O |
NT_034001 | AC090551 | 64965161 | 2 | chr16 | NT_034001 | AC092126 | 65044169 | 1 | 15637 | 0 | 4899 | 20536 |
| S/G/Y/R/B/O |
NT_034001 | AC090551 | 64965161 | 2 | chr16 | NT_034001 | AC009161 | 66707566 | 3 | 26333 | 0 | 0 | 26333 |
| S/G/Y/R/B/O |
NT_034001 | AC090551 | 64965161 | 2 |   |   | AC092124 | 66707566 | 1 | 22529 | 4413 | 9447 | 36389 |
| S/G/Y/R/B/O |
NT_034001 | AC092126 | 65044169 | 1 | chr16 | NT_034001 | AC025049 | 65162687 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_034001 | AC092126 | 65044169 | 1 | chr16 | NT_034001 | AC009085 | 64826365 | 3 | 36932 | 4808 | 14295 | 56035 |
| S/G/Y/R/B/O |
NT_034001 | AC092126 | 65044169 | 1 | chr16 | NT_034001 | AC018846 | 65169680 | 3 | 61753 | 0 | 1276 | 63029 |
| S/G/Y/R/B/O |
NT_034001 | AC092126 | 65044169 | 1 |   |   | AC092124 | 17353555 | 1 | 43062 | 17923 | 24503 | 85488 |
| S/G/Y/R/B/O |
NT_034001 | AC025049 | 65162687 | 1 | chr16 | NT_034001 | AC018846 | 65169680 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_034001 | AC025049 | 65162687 | 1 | chr16 | NT_034001 | AC009110 | 67008299 | 3 | 123394 | 8386 | 3050 | 134830 |
| S/G/Y/R/B/O |
NT_034001 | AC025049 | 65162687 | 1 | chr16 | NT_034001 | AC094083 | 66887797 | 3 | 58287 | 4549 | 4004 | 66840 |
| S/G/Y/R/B/O |
NT_034001 | AC025049 | 65162687 | 1 |   |   | AC027274 | 67008299 | 2 | 83490 | 6620 | 2797 | 92907 |
| S/G/Y/R/B/O |
NT_034001 | AC018846 | 65169680 | 3 | chr16 | NT_034001 | AC092337 | 65345198 | 3 | 4684 | 0 | 0 | 4684 |
| S/G/Y/R/B/O |
NT_034001 | AC018846 | 65169680 | 3 | chr16 | NT_034001 | AC092126 | 65044169 | 1 | 61753 | 0 | 1276 | 63029 |
| S/G/Y/R/B/O |
NT_034001 | AC018846 | 65169680 | 3 |   |   | AC010534 | 66887797 | 3 | 27409 | 0 | 0 | 27409 |
| S/G/Y/R/B/O |
NT_034001 | AC018846 | 65169680 | 3 |   |   | AC092124 | 66887797 | 1 | 53474 | 0 | 3544 | 57018 |
| S/G/Y/R/B/O |
NT_034001 | AC092337 | 65345198 | 3 | chr16 | NT_034001 | AC012177 | 65516506 | 3 | 38071 | 0 | 0 | 38071 |
| S/G/Y/R/B/O |
NT_034001 | AC092337 | 65345198 | 3 |   |   | AC010534 | 65345198 | 3 | 123485 | 0 | 0 | 123485 |
| S/G/Y/R/B/O |
NT_034001 | AC012177 | 65516506 | 3 | chr16 | NT_034001 | AC093536 | 65665111 | 2 | 42059 | 0 | 0 | 42059 |
| S/G/Y/R/B/O |
NT_034001 | AC012177 | 65516506 | 3 | chr16 | NT_034001 | AC009047 | 65740471 | 1 | 23196 | 0 | 22120 | 45316 |
| S/G/Y/R/B/O |
NT_034001 | AC093536 | 65665111 | 2 | chr16 | NT_034001 | AC009047 | 65740471 | 1 | 106574 | 4793 | 32059 | 143426 |
| S/G/Y/R/B/O |
NT_034001 | AC093536 | 65665111 | 2 | chr16 | NT_034001 | AC012322 | 65800922 | 3 | 18676 | 0 | 16197 | 34873 |
| S/G/Y/R/B/O |
NT_034001 | AC093536 | 65665111 | 2 | chr16 | NT_034001 | AC092286 | 65742133 | 1 | 48369 | 0 | 0 | 48369 |
| S/G/Y/R/B/O |
NT_034001 | AC009047 | 65740471 | 1 | chr16 | NT_034001 | AC092286 | 65742133 | 1 | 13840 | 0 | 5522 | 19362 |
| S/G/Y/R/B/O |
NT_034001 | AC009047 | 65740471 | 1 | chr16 | NT_034001 | AC012177 | 65516506 | 3 | 23196 | 0 | 22120 | 45316 |
| S/G/Y/R/B/O |
NT_034001 | AC092286 | 65742133 | 1 | chr16 | NT_034001 | AC012322 | 65800922 | 3 | 64929 | 0 | 0 | 64929 |
| S/G/Y/R/B/O |
NT_034001 | AC092286 | 65742133 | 1 | chr16 | NT_034001 | AC093536 | 65665111 | 2 | 48369 | 0 | 0 | 48369 |
| S/G/Y/R/B/O |
NT_034001 | AC012322 | 65800922 | 3 | chr16 | NT_034001 | AC009109 | 65987122 | 3 | 106134 | 0 | 0 | 106134 |
| S/G/Y/R/B/O |
NT_034001 | AC012322 | 65800922 | 3 | chr16 | NT_034001 | AC093536 | 65665111 | 2 | 18676 | 0 | 16197 | 34873 |
| S/G/Y/R/B/O |
NT_034001 | AC009109 | 65987122 | 3 | chr16 | NT_034001 | AC092323 | 66031023 | 1 | 5106 | 0 | 0 | 5106 |
| S/G/Y/R/B/O |
NT_034001 | AC092323 | 66031023 | 1 | chr16 | NT_034001 | AC092131 | 66051423 | 1 | 92903 | 0 | 0 | 92903 |
| S/G/Y/R/B/O |
NT_034001 | AC092131 | 66051423 | 1 | chr16 | NT_034001 | AC004533 | 66243850 | 3 | 10239 | 0 | 200 | 10439 |
| S/G/Y/R/B/O |
NT_034001 | AC004533 | 66243850 | 3 | chr16 | NT_034001 | AC009101 | 66354059 | 3 | 70657 | 0 | 0 | 70657 |
| S/G/Y/R/B/O |
NT_034001 | AC009101 | 66354059 | 3 | chr16 | NT_034001 | AC010533 | 66455524 | 3 | 2511 | 0 | 0 | 2511 |
| S/G/Y/R/B/O |
NT_034001 | AC010533 | 66455524 | 3 | chr16 | NT_034001 | AC025763 | 66606601 | 3 | 105677 | 0 | 0 | 105677 |
| S/G/Y/R/B/O |
NT_034001 | AC010533 | 66455524 | 3 |   |   | AC068656 | 66606601 | 2 | 62497 | 5245 | 7027 | 74769 |
| S/G/Y/R/B/O |
NT_034001 | AC025763 | 66606601 | 3 | chr16 | NT_034001 | AC009161 | 66707566 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_034001 | AC025763 | 66606601 | 3 |   |   | AC068656 | 66455524 | 2 | 154997 | 7234 | 7078 | 169309 |
| S/G/Y/R/B/O |
NT_034001 | AC009161 | 66707566 | 3 | chr16 | NT_034001 | AC094083 | 66887797 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_034001 | AC009161 | 66707566 | 3 | chr16 | NT_034001 | AC090551 | 64965161 | 2 | 26333 | 0 | 0 | 26333 |
| S/G/Y/R/B/O |
NT_034001 | AC094083 | 66887797 | 3 | chr16 | NT_034001 | AC009110 | 67008299 | 3 | 84917 | 0 | 0 | 84917 |
| S/G/Y/R/B/O |
NT_034001 | AC094083 | 66887797 | 3 | chr16 | NT_034001 | AC025049 | 65162687 | 1 | 58287 | 4549 | 4004 | 66840 |
| S/G/Y/R/B/O |
NT_034001 | AC094083 | 66887797 | 3 |   |   | AC027274 | 65162687 | 2 | 89868 | 1566 | 0 | 91434 |
| S/G/Y/R/B/O |
NT_034001 | AC009110 | 67008299 | 3 | chr16 | NT_034001 | AC092116 | 67112098 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_034001 | AC009110 | 67008299 | 3 | chr16 | NT_034001 | AC025049 | 65162687 | 1 | 123394 | 8386 | 3050 | 134830 |
| S/G/Y/R/B/O |
NT_034001 | AC009110 | 67008299 | 3 |   |   | AC027274 | 65162687 | 2 | 106023 | 0 | 0 | 106023 |
| S/G/Y/R/B/O |
NT_034001 | AC092116 | 67112098 | 3 | chr16 | NT_034001 | AC010546 | 67170848 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_034001 | AC092116 | 67112098 | 3 |   |   | AC091883 | 66887797 | 1 | 22645 | 0 | 0 | 22645 |
| S/G/Y/R/B/O |
NT_034001 | AC010546 | 67170848 | 3 | chr16 | NT_034001 | AC009111 | 67334380 | 3 | 81958 | 0 | 0 | 81958 |
| S/G/Y/R/B/O |
NT_034001 | AC010546 | 67170848 | 3 |   |   | AC091850 | 67334380 | 1 | 17254 | 0 | 5576 | 22830 |
| S/G/Y/R/B/O |
NT_034001 | AC010546 | 67170848 | 3 |   |   | AC091883 | 67334380 | 1 | 154047 | 0 | 16116 | 170163 |
| S/G/Y/R/B/O |
NT_034001 | AC009111 | 67334380 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_034001 | AC009111 | 67334380 | 3 |   |   | AC091883 | 67170848 | 1 | 54678 | 0 | 16114 | 70792 |
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