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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010591 | AC069269 | 23596654 | 1 | chr16 | NT_010591 | AC009035 | 23605166 | 1 | 48824 | 5356 | 23058 | 77238 |
| S/G/Y/R/B/O |
NT_010591 | AC069269 | 23596654 | 1 | chr16 | NT_010604 | AC002331 | 27980731 | 3 | 16665 | 0 | 4630 | 21295 |
| S/G/Y/R/B/O |
NT_010591 | AC069269 | 23596654 | 1 | chr16 | NT_010591 | AC003049 | 23675973 | 3 | 24435 | 3541 | 20543 | 48519 |
| S/G/Y/R/B/O |
NT_010591 | AC069269 | 23596654 | 1 |   |   | AC004123 | 23675973 | 1 | 11007 | 3541 | 20543 | 35091 |
| S/G/Y/R/B/O |
NT_010591 | AC009035 | 23605166 | 1 | chr16 | NT_010591 | AC003049 | 23675973 | 3 | 59634 | 2107 | 5906 | 67647 |
| S/G/Y/R/B/O |
NT_010591 | AC009035 | 23605166 | 1 |   |   | AC004123 | 23675973 | 1 | 38740 | 2082 | 5953 | 46775 |
| S/G/Y/R/B/O |
NT_010591 | AC003049 | 23675973 | 3 | chr16 | NT_010591 | AC084797 | 23789479 | 2 | 33107 | 0 | 0 | 33107 |
| S/G/Y/R/B/O |
NT_010591 | AC003049 | 23675973 | 3 | chr16 | NT_010591 | AC069269 | 23596654 | 1 | 24435 | 3541 | 20543 | 48519 |
| S/G/Y/R/B/O |
NT_010591 | AC003049 | 23675973 | 3 |   |   | AC004123 | 20209121 | 1 | 120692 | 0 | 0 | 120692 |
| S/G/Y/R/B/O |
NT_010591 | AC084797 | 23789479 | 2 | chr16 | NT_010591 | AC092725 | 23921968 | 2 | 26510 | 0 | 0 | 26510 |
| S/G/Y/R/B/O |
NT_010591 | AC084797 | 23789479 | 2 |   |   | AC004123 | 23675973 | 1 | 33107 | 0 | 0 | 33107 |
| S/G/Y/R/B/O |
NT_010591 | AC092725 | 23921968 | 2 | chr16 | NT_010591 | AC109449 | 24075925 | 1 | 28169 | 0 | 32428 | 60597 |
| S/G/Y/R/B/O |
NT_010591 | AC109449 | 24075925 | 1 | chr16 | NT_010591 | AC106739 | 24117006 | 2 | 75535 | 0 | 2085 | 77620 |
| S/G/Y/R/B/O |
NT_010591 | AC106739 | 24117006 | 2 | chr16 | NT_010591 | AC004525 | 24198413 | 3 | 55876 | 0 | 0 | 55876 |
| S/G/Y/R/B/O |
NT_010591 | AC106739 | 24117006 | 2 |   |   | AF421855 | 24075925 | 3 | 25905 | 0 | 0 | 25905 |
| S/G/Y/R/B/O |
NT_010591 | AC004525 | 24198413 | 3 | chr16 | NT_010591 | AC002303 | 24328433 | 3 | 35395 | 0 | 0 | 35395 |
| S/G/Y/R/B/O |
NT_010591 | AC004525 | 24198413 | 3 |   |   | AF421855 | 24117006 | 3 | 26511 | 0 | 0 | 26511 |
| S/G/Y/R/B/O |
NT_010591 | AC004525 | 24198413 | 3 |   |   | AY064474 | 24117006 | 3 | 13327 | 0 | 0 | 13327 |
| S/G/Y/R/B/O |
NT_010591 | AC002303 | 24328433 | 3 | chr16 | NT_010591 | AC025275 | 24424515 | 3 | 61842 | 0 | 0 | 61842 |
| S/G/Y/R/B/O |
NT_010591 | AC002303 | 24328433 | 3 |   |   | AY064474 | 24424515 | 3 | 26342 | 0 | 0 | 26342 |
| S/G/Y/R/B/O |
NT_010591 | AC025275 | 24424515 | 3 | chr16 | NT_010591 | AC002551 | 24457473 | 3 | 21749 | 0 | 0 | 21749 |
| S/G/Y/R/B/O |
NT_010591 | AC002551 | 24457473 | 3 | chr16 | NT_010591 | AC016597 | 24550134 | 3 | 31275 | 0 | 0 | 31275 |
| S/G/Y/R/B/O |
NT_010591 | AC016597 | 24550134 | 3 | chr16 | NT_010591 | AC092330 | 24648168 | 3 | 34063 | 0 | 0 | 34063 |
| S/G/Y/R/B/O |
NT_010591 | AC016597 | 24550134 | 3 |   |   | AC061996 | 24457473 | 1 | 16217 | 3914 | 1014 | 21145 |
| S/G/Y/R/B/O |
NT_010591 | AC092330 | 24648168 | 3 | chr16 | NT_010591 | AC008732 | 24666452 | 3 | 4376 | 0 | 0 | 4376 |
| S/G/Y/R/B/O |
NT_010591 | AC092330 | 24648168 | 3 |   |   | AC061996 | 24550134 | 1 | 34270 | 3915 | 1014 | 39199 |
| S/G/Y/R/B/O |
NT_010591 | AC008732 | 24666452 | 3 | chr16 | NT_010591 | AC003010 | 24847241 | 3 | 5991 | 0 | 0 | 5991 |
| S/G/Y/R/B/O |
NT_010591 | AC008732 | 24666452 | 3 |   |   | AC061996 | 24847241 | 1 | 98536 | 8884 | 5025 | 112445 |
| S/G/Y/R/B/O |
NT_010591 | AC003010 | 24847241 | 3 | chr16 | NT_010591 | AC009030 | 25015817 | 3 | 148066 | 0 | 0 | 148066 |
| S/G/Y/R/B/O |
NT_010591 | AC003010 | 24847241 | 3 | chr16 | NT_010591 | AC002399 | 25615305 | 1 | 64973 | 5997 | 55455 | 126425 |
| S/G/Y/R/B/O |
NT_010591 | AC003010 | 24847241 | 3 |   |   | AC010334 | 25015817 | 1 | 13247 | 0 | 0 | 13247 |
| S/G/Y/R/B/O |
NT_010591 | AC009030 | 25015817 | 3 | chr16 | NT_010591 | AC084794 | 25056373 | 1 | 0 | 920 | 0 | 920 |
| S/G/Y/R/B/O |
NT_010591 | AC009030 | 25015817 | 3 | chr16 | NT_010591 | AC002399 | 25615305 | 1 | 139627 | 5996 | 0 | 145623 |
| S/G/Y/R/B/O |
NT_010591 | AC009030 | 25015817 | 3 |   |   | AC010334 | 24847241 | 1 | 26069 | 0 | 0 | 26069 |
| S/G/Y/R/B/O |
NT_010591 | AC084794 | 25056373 | 1 | chr16 | NT_010591 | AC116346 | 25063595 | 1 | 4492 | 0 | 0 | 4492 |
| S/G/Y/R/B/O |
NT_010591 | AC084794 | 25056373 | 1 | chr16 | NT_010589 | AC002544 | 29631319 | 3 | 10404 | 0 | 724 | 11128 |
| S/G/Y/R/B/O |
NT_010591 | AC084794 | 25056373 | 1 | chr16 | NT_010591 | AC026454 | 25331346 | 3 | 10433 | 0 | 15255 | 25688 |
| S/G/Y/R/B/O |
NT_010591 | AC116346 | 25063595 | 1 | chr16 | NT_010591 | U91326 | 25074813 | 3 | 108517 | 0 | 11624 | 120141 |
| S/G/Y/R/B/O |
NT_010591 | AC116346 | 25063595 | 1 | chr16 | NT_010589 | AC002544 | 29631319 | 3 | 91640 | 0 | 2640 | 94280 |
| S/G/Y/R/B/O |
NT_010591 | AC116346 | 25063595 | 1 | chr16 | NT_033291 | AC008956 | 58477965 | 3 | 43279 | 0 | 2635 | 45914 |
| S/G/Y/R/B/O |
NT_010591 | AC116346 | 25063595 | 1 | chr16 | NT_010589 | AC020765 | 29618763 | 1 | 12003 | 0 | 4819 | 16822 |
| S/G/Y/R/B/O |
NT_010591 | AC116346 | 25063595 | 1 | chr16 | NT_010591 | AC026454 | 25331346 | 3 | 19459 | 0 | 0 | 19459 |
| S/G/Y/R/B/O |
NT_010591 | U91326 | 25074813 | 3 | chr16 | NT_010591 | AC026454 | 25331346 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010591 | U91326 | 25074813 | 3 | chr16 | NT_010589 | AC020765 | 29618763 | 1 | 12003 | 0 | 0 | 12003 |
| S/G/Y/R/B/O |
NT_010591 | AC026454 | 25331346 | 3 | chr16 | NT_010591 | AC002399 | 25615305 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010591 | AC026454 | 25331346 | 3 | chr16 | NT_010589 | AC002544 | 29631319 | 3 | 73851 | 0 | 0 | 73851 |
| S/G/Y/R/B/O |
NT_010591 | AC026454 | 25331346 | 3 | chr16 | NT_010589 | AC020765 | 29618763 | 1 | 11962 | 0 | 4821 | 16783 |
| S/G/Y/R/B/O |
NT_010591 | AC026454 | 25331346 | 3 | chr16 | NT_010591 | AC084794 | 25056373 | 1 | 10433 | 0 | 15255 | 25688 |
| S/G/Y/R/B/O |
NT_010591 | AC026454 | 25331346 | 3 | chr16 | NT_010591 | AC116346 | 25063595 | 1 | 19459 | 0 | 0 | 19459 |
| S/G/Y/R/B/O |
NT_010591 | AC002399 | 25615305 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010591 | AC002399 | 25615305 | 1 | chr16 | NT_010591 | AC003010 | 24847241 | 3 | 64973 | 5997 | 55455 | 126425 |
| S/G/Y/R/B/O |
NT_010591 | AC002399 | 25615305 | 1 | chr16 | NT_010591 | AC009030 | 25015817 | 3 | 139627 | 5996 | 0 | 145623 |
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