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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010530 | AC040167 | 18616939 | 1 | chr16 | NT_010530 | AC092122 | 18652622 | 3 | 47724 | 0 | 72695 | 120419 |
| S/G/Y/R/B/O |
NT_010530 | AC040167 | 18616939 | 1 |   |   | AC087190 | 179872732 | 1 | 44015 | 0 | 0 | 44015 |
| S/G/Y/R/B/O |
NT_010530 | AC092122 | 18652622 | 3 | chr16 | NT_010530 | AC012178 | 18798073 | 3 | 34590 | 0 | 0 | 34590 |
| S/G/Y/R/B/O |
NT_010530 | AC092122 | 18652622 | 3 |   |   | AC010540 | 179992707 | 2 | 42381 | 0 | 0 | 42381 |
| S/G/Y/R/B/O |
NT_010530 | AC092122 | 18652622 | 3 |   |   | AC087190 | 18616939 | 1 | 19279 | 0 | 0 | 19279 |
| S/G/Y/R/B/O |
NT_010530 | AC012178 | 18798073 | 3 | chr16 | NT_010530 | AC007221 | 18953928 | 3 | 24743 | 0 | 0 | 24743 |
| S/G/Y/R/B/O |
NT_010530 | AC012178 | 18798073 | 3 |   |   | AC010540 | 18953928 | 2 | 129397 | 6937 | 2973 | 139307 |
| S/G/Y/R/B/O |
NT_010530 | AC007221 | 18953928 | 3 | chr16 | NT_010530 | AC007218 | 19159848 | 3 | 27873 | 0 | 0 | 27873 |
| S/G/Y/R/B/O |
NT_010530 | AC007221 | 18953928 | 3 |   |   | AC010540 | 19159848 | 2 | 32995 | 2388 | 2424 | 37807 |
| S/G/Y/R/B/O |
NT_010530 | AC007218 | 19159848 | 3 | chr16 | NT_010530 | AC006531 | 19325123 | 3 | 72183 | 0 | 0 | 72183 |
| S/G/Y/R/B/O |
NT_010530 | AC006531 | 19325123 | 3 | chr16 | NT_010530 | AC026423 | 19420462 | 3 | 9177 | 0 | 0 | 9177 |
| S/G/Y/R/B/O |
NT_010530 | AC026423 | 19420462 | 3 | chr16 | NT_010530 | AC017012 | 19527433 | 1 | 23339 | 0 | 1839 | 25178 |
| S/G/Y/R/B/O |
NT_010530 | AC017012 | 19527433 | 1 | chr16 | NT_010530 | AC007596 | 19608719 | 3 | 25349 | 6161 | 13725 | 45235 |
| S/G/Y/R/B/O |
NT_010530 | AC017012 | 19527433 | 1 | chr16 | NT_010530 | AC079415 | 19799664 | 1 | 14072 | 4378 | 14300 | 32750 |
| S/G/Y/R/B/O |
NT_010530 | AC007596 | 19608719 | 3 | chr16 | NT_010530 | AC022168 | 19793178 | 1 | 158818 | 0 | 0 | 158818 |
| S/G/Y/R/B/O |
NT_010530 | AC007596 | 19608719 | 3 | chr16 | NT_010530 | AC079415 | 19799664 | 1 | 35649 | 0 | 27044 | 62693 |
| S/G/Y/R/B/O |
NT_010530 | AC022168 | 19793178 | 1 | chr16 | NT_010530 | AC079415 | 19799664 | 1 | 0 | 2092 | 28127 | 30219 |
| S/G/Y/R/B/O |
NT_010530 | AC079415 | 19799664 | 1 | chr16 | NT_010530 | AC074136 | 19803269 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010530 | AC079415 | 19799664 | 1 | chr16 | NT_010530 | AC007596 | 19608719 | 3 | 35649 | 0 | 27044 | 62693 |
| S/G/Y/R/B/O |
NT_010530 | AC079415 | 19799664 | 1 | chr16 | NT_010530 | AC017012 | 19527433 | 1 | 14072 | 4378 | 14300 | 32750 |
| S/G/Y/R/B/O |
NT_010530 | AC074136 | 19803269 | 2 | chr16 | NT_010530 | AC016139 | 19805373 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010530 | AC074136 | 19803269 | 2 | chr16 | NT_010530 | AC007595 | 19877725 | 3 | 42959 | 0 | 8626 | 51585 |
| S/G/Y/R/B/O |
NT_010530 | AC074136 | 19803269 | 2 |   |   | AC083992 | 19877725 | 1 | 20487 | 0 | 13779 | 34266 |
| S/G/Y/R/B/O |
NT_010530 | AC016139 | 19805373 | 1 | chr16 | NT_010530 | AC007595 | 19877725 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010530 | AC016139 | 19805373 | 1 | chr16 | NT_010530 | AC027277 | 20055539 | 2 | 35379 | 0 | 23732 | 59111 |
| S/G/Y/R/B/O |
NT_010530 | AC007595 | 19877725 | 3 | chr16 | NT_010530 | AC027277 | 20055539 | 2 | 8676 | 0 | 0 | 8676 |
| S/G/Y/R/B/O |
NT_010530 | AC007595 | 19877725 | 3 | chr16 | NT_010530 | AC074136 | 19803269 | 2 | 42959 | 0 | 8626 | 51585 |
| S/G/Y/R/B/O |
NT_010530 | AC007595 | 19877725 | 3 |   |   | AC083992 | 19803269 | 1 | 135084 | 2995 | 8919 | 146998 |
| S/G/Y/R/B/O |
NT_010530 | AC027277 | 20055539 | 2 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010530 | AC027277 | 20055539 | 2 | chr16 | NT_010530 | AC016139 | 19805373 | 1 | 35379 | 0 | 23732 | 59111 |
| S/G/Y/R/B/O |
NT_010530 | AC027277 | 20055539 | 2 |   |   | AY057060 | 19805373 | 3 | 28427 | 0 | 0 | 28427 |
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