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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_024797 | AF217490 | 83577483 | 3 | chr16 | NT_024797 | AC009141 | 83848235 | 2 | 0 | 0 | 94950 | 94950 |
| S/G/Y/R/B/O |
NT_024797 | AC009141 | 83848235 | 2 | chr16 | NT_024797 | AF179633 | 83937698 | 3 | 10179 | 2445 | 4109 | 16733 |
| S/G/Y/R/B/O |
NT_024797 | AF179633 | 83937698 | 3 | chr16 | NT_024797 | AC027279 | 84033554 | 3 | 0 | 0 | 20161 | 20161 |
| S/G/Y/R/B/O |
NT_024797 | AC027279 | 84033554 | 3 | chr16 | NT_024797 | AC009145 | 84208005 | 3 | 47995 | 0 | 0 | 47995 |
| S/G/Y/R/B/O |
NT_024797 | AC009145 | 84208005 | 3 | chr16 | NT_024797 | AC092376 | 84342099 | 3 | 2515 | 0 | 0 | 2515 |
| S/G/Y/R/B/O |
NT_024797 | AC009145 | 84208005 | 3 |   |   | AC009129 | 83937698 | 1 | 67085 | 4103 | 15598 | 86786 |
| S/G/Y/R/B/O |
NT_024797 | AC092376 | 84342099 | 3 | chr16 | NT_024797 | AC084064 | 84507662 | 1 | 7988 | 0 | 0 | 7988 |
| S/G/Y/R/B/O |
NT_024797 | AC092376 | 84342099 | 3 |   |   | AC009129 | 84342099 | 1 | 32005 | 7115 | 21075 | 60195 |
| S/G/Y/R/B/O |
NT_024797 | AC084064 | 84507662 | 1 | chr16 | NT_024797 | AC087188 | 84514671 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024797 | AC084064 | 84507662 | 1 | chr16 | NT_024797 | AC009059 | 84748757 | 2 | 74109 | 0 | 6107 | 80216 |
| S/G/Y/R/B/O |
NT_024797 | AC087188 | 84514671 | 1 | chr16 | NT_024797 | AC009159 | 84631144 | 2 | 0 | 954 | 0 | 954 |
| S/G/Y/R/B/O |
NT_024797 | AC087188 | 84514671 | 1 | chr16 | NT_024797 | AC113931 | 84958062 | 3 | 51874 | 0 | 12895 | 64769 |
| S/G/Y/R/B/O |
NT_024797 | AC009159 | 84631144 | 2 | chr16 | NT_024797 | AC009059 | 84748757 | 2 | 90537 | 0 | 0 | 90537 |
| S/G/Y/R/B/O |
NT_024797 | AC009059 | 84748757 | 2 | chr16 | NT_024797 | AC113931 | 84958062 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024797 | AC009059 | 84748757 | 2 | chr16 | NT_024797 | AC084064 | 84507662 | 1 | 74109 | 0 | 6107 | 80216 |
| S/G/Y/R/B/O |
NT_024797 | AC113931 | 84958062 | 3 | chr16 | NT_024797 | AC092130 | 85040115 | 3 | 18406 | 0 | 0 | 18406 |
| S/G/Y/R/B/O |
NT_024797 | AC113931 | 84958062 | 3 | chr16 | NT_024797 | AC087188 | 84514671 | 1 | 51874 | 0 | 12895 | 64769 |
| S/G/Y/R/B/O |
NT_024797 | AC092130 | 85040115 | 3 | chr16 | NT_024797 | AC022166 | 85210635 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_024797 | AC022166 | 85210635 | 3 | chr16 | NT_024797 | AC108483 | 85371565 | 3 | 50711 | 0 | 0 | 50711 |
| S/G/Y/R/B/O |
NT_024797 | AC108483 | 85371565 | 3 | chr16 | NT_024797 | AC105411 | 85484828 | 3 | 46178 | 0 | 0 | 46178 |
| S/G/Y/R/B/O |
NT_024797 | AC108483 | 85371565 | 3 |   |   | AC023250 | 85210635 | 1 | 37040 | 11743 | 0 | 48783 |
| S/G/Y/R/B/O |
NT_024797 | AC108483 | 85371565 | 3 |   |   | AC026986 | 85210635 | 1 | 38378 | 0 | 0 | 38378 |
| S/G/Y/R/B/O |
NT_024797 | AC108483 | 85371565 | 3 |   |   | AC068269 | 85210635 | 1 | 74912 | 11414 | 3361 | 89687 |
| S/G/Y/R/B/O |
NT_024797 | AC105411 | 85484828 | 3 | chr16 | NT_024797 | AC108097 | 85611335 | 3 | 32952 | 0 | 0 | 32952 |
| S/G/Y/R/B/O |
NT_024797 | AC105411 | 85484828 | 3 |   |   | AC023250 | 85484828 | 1 | 111830 | 21262 | 2611 | 135703 |
| S/G/Y/R/B/O |
NT_024797 | AC105411 | 85484828 | 3 |   |   | AC026986 | 85484828 | 1 | 152245 | 5253 | 1082 | 158580 |
| S/G/Y/R/B/O |
NT_024797 | AC105411 | 85484828 | 3 |   |   | AC068269 | 85484828 | 1 | 45816 | 3351 | 0 | 49167 |
| S/G/Y/R/B/O |
NT_024797 | AC108097 | 85611335 | 3 | chr16 | NT_024797 | AC092332 | 85708561 | 3 | 51019 | 0 | 0 | 51019 |
| S/G/Y/R/B/O |
NT_024797 | AC108097 | 85611335 | 3 |   |   | AC023250 | 85371565 | 1 | 15794 | 1747 | 1429 | 18970 |
| S/G/Y/R/B/O |
NT_024797 | AC108097 | 85611335 | 3 |   |   | AC026986 | 85371565 | 1 | 69978 | 0 | 0 | 69978 |
| S/G/Y/R/B/O |
NT_024797 | AC092332 | 85708561 | 3 | chr16 | NT_024797 | AC099313 | 85822941 | 3 | 41315 | 0 | 0 | 41315 |
| S/G/Y/R/B/O |
NT_024797 | AC099313 | 85822941 | 3 | chr16 | NT_024797 | AC009070 | 85890164 | 3 | 44948 | 0 | 0 | 44948 |
| S/G/Y/R/B/O |
NT_024797 | AC099313 | 85822941 | 3 |   |   | AC013398 | 85890164 | 1 | 33688 | 0 | 25782 | 59470 |
| S/G/Y/R/B/O |
NT_024797 | AC009070 | 85890164 | 3 | chr16 | NT_024797 | AC009079 | 86015082 | 3 | 78201 | 0 | 0 | 78201 |
| S/G/Y/R/B/O |
NT_024797 | AC009070 | 85890164 | 3 |   |   | AC013398 | 86015082 | 1 | 100968 | 0 | 2230 | 103198 |
| S/G/Y/R/B/O |
NT_024797 | AC009079 | 86015082 | 3 | chr16 | NT_024797 | AC092718 | 86120835 | 3 | 93809 | 0 | 0 | 93809 |
| S/G/Y/R/B/O |
NT_024797 | AC092718 | 86120835 | 3 |   |   |   |   |   |   |   |   |   |
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