Chromosome 16 - Clone Overlaps

Chromosome 16 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033286	NT_033283	NT_010384	NT_031905	NT_033285	NT_010419	NT_010393	NT_033288
NT_033281	NT_030837	NT_010552	NT_010530	NT_024776	NT_010441	NT_010591	NT_033284
NT_010604	NT_010589	NT_024802	NT_024812	NT_024779	NT_033282	NT_024773	NT_010505
NT_010493	NT_010498	NT_034002	NT_033291	NT_010463	NT_033904	NT_034001	NT_010546
NT_033289	NT_010480	NT_031902	NT_030154	NT_010635	NT_010478	NT_010494	NT_024797
NT_010422	NT_024767	NT_033290	NT_028371	NT_024788	NT_019609	NT_033287	NT_010404
NT_010542

NT_010463

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_010463	AC092121	58990782	1	chr16	NT_010463	AC018552	59014557	2	0	0	0	0
S/G/Y/R/B/O	NT_010463	AC092121	58990782	1	chr16	NT_010463	AC009147	61430752	3	29714	1723	0	31437
S/G/Y/R/B/O	NT_010463	AC092121	58990782	1	chr16	NT_010463	AC106793	61340719	1	35532	0	4157	39689
S/G/Y/R/B/O	NT_010463	AC018552	59014557	2	chr16	NT_010463	AC012181	59102772	3	0	0	0	0
S/G/Y/R/B/O	NT_010463	AC012181	59102772	3	chr16	NT_010463	AC010550	59265182	1	23161	0	27273	50434
S/G/Y/R/B/O	NT_010463	AC012181	59102772	3			AB034990	59989723	3	18352	0	0	18352
S/G/Y/R/B/O	NT_010463	AC010550	59265182	1	chr16	NT_010463	AC020769	59332721	1	85171	0	19476	104647
S/G/Y/R/B/O	NT_010463	AC010550	59265182	1	chr16	NT_010463	AC009090	59399763	3	32511	0	0	32511
S/G/Y/R/B/O	NT_010463	AC010550	59265182	1	chr16	NT_010463	AC023825	59334825	1	85561	0	11285	96846
S/G/Y/R/B/O	NT_010463	AC020769	59332721	1	chr16	NT_010463	AC023825	59334825	1	142301	0	8410	150711
S/G/Y/R/B/O	NT_010463	AC020769	59332721	1	chr16	NT_010463	AC009090	59399763	3	79714	0	4362	84076
S/G/Y/R/B/O	NT_010463	AC023825	59334825	1	chr16	NT_010463	AC009090	59399763	3	69941	0	19672	89613
S/G/Y/R/B/O	NT_010463	AC023825	59334825	1	chr16	NT_010463	AC010550	59265182	1	85561	0	11285	96846
S/G/Y/R/B/O	NT_010463	AC023825	59334825	1	chr16	NT_010463	AC108081	59574638	3	13625	0	0	13625
S/G/Y/R/B/O	NT_010463	AC009090	59399763	3	chr16	NT_010463	AC108081	59574638	3	22877	0	0	22877
S/G/Y/R/B/O	NT_010463	AC009090	59399763	3	chr16	NT_010463	AC010550	59265182	1	32511	0	0	32511
S/G/Y/R/B/O	NT_010463	AC009090	59399763	3	chr16	NT_010463	AC020769	59332721	1	79714	0	4362	84076
S/G/Y/R/B/O	NT_010463	AC108081	59574638	3	chr16	NT_010463	AC009052	59675446	3	39157	0	0	39157
S/G/Y/R/B/O	NT_010463	AC108081	59574638	3	chr16	NT_010463	AC023825	59334825	1	13625	0	0	13625
S/G/Y/R/B/O	NT_010463	AC108081	59574638	3	chr16	NT_010463	AP001492	59902996	1	12551	1655	11825	26031
S/G/Y/R/B/O	NT_010463	AC009052	59675446	3	chr16	NT_010463	AC004382	59836538	3	152327	0	0	152327
S/G/Y/R/B/O	NT_010463	AC009052	59675446	3	chr16	NT_010463	AP001492	59902996	1	66438	9355	24949	100742
S/G/Y/R/B/O	NT_010463	AC009052	59675446	3	chr16	NT_010463	AP002420	59905546	1	58750	17023	27546	103319
S/G/Y/R/B/O	NT_010463	AC004382	59836538	3	chr16	NT_010463	AC027349	59901806	2	2779	0	0	2779
S/G/Y/R/B/O	NT_010463	AC004382	59836538	3	chr16	NT_010463	AP001492	59902996	1	60403	7162	9868	77433
S/G/Y/R/B/O	NT_010463	AC004382	59836538	3	chr16	NT_010463	AP002420	59905546	1	82842	24401	30812	138055
S/G/Y/R/B/O	NT_010463	AC027349	59901806	2	chr16	NT_010463	AP001492	59902996	1	0	0	0	0
S/G/Y/R/B/O	NT_010463	AP001492	59902996	1	chr16	NT_010463	AP002420	59905546	1	23986	5583	13047	42616
S/G/Y/R/B/O	NT_010463	AP001492	59902996	1	chr16	NT_010463	AC004382	59836538	3	60403	7162	9868	77433
S/G/Y/R/B/O	NT_010463	AP001492	59902996	1	chr16	NT_010463	AC009052	59675446	3	66438	9355	24949	100742
S/G/Y/R/B/O	NT_010463	AP001492	59902996	1	chr16	NT_010463	AC108081	59574638	3	12551	1655	11825	26031
S/G/Y/R/B/O	NT_010463	AP002420	59905546	1	chr16	NT_010463	AC092118	59989723	3	0	0	0	0
S/G/Y/R/B/O	NT_010463	AP002420	59905546	1	chr16	NT_010463	AC004382	59836538	3	82842	24401	30812	138055
S/G/Y/R/B/O	NT_010463	AP002420	59905546	1	chr16	NT_010463	AC009052	59675446	3	58750	17023	27546	103319
S/G/Y/R/B/O	NT_010463	AC092118	59989723	3	chr16	NT_010463	AC010543	60095977	3	20544	0	0	20544
S/G/Y/R/B/O	NT_010463	AC092118	59989723	3			AC009128	59902996	2	63873	0	778	64651
S/G/Y/R/B/O	NT_010463	AC092118	59989723	3			AC092285	59014557	1	51333	13066	35547	99946
S/G/Y/R/B/O	NT_010463	AC010543	60095977	3	chr16	NT_010463	AC012182	60276261	2	0	0	35920	35920
S/G/Y/R/B/O	NT_010463	AC010543	60095977	3			AC009128	59014557	2	111249	0	0	111249
S/G/Y/R/B/O	NT_010463	AC012182	60276261	2	chr16	NT_010463	AC026771	60364176	3	7545	0	0	7545
S/G/Y/R/B/O	NT_010463	AC012182	60276261	2			AC009128	59989723	2	34723	0	0	34723
S/G/Y/R/B/O	NT_010463	AC026771	60364176	3	chr16	NT_010463	AC009107	60433982	3	47531	0	0	47531
S/G/Y/R/B/O	NT_010463	AC009107	60433982	3	chr16	NT_010463	AC084063	60594620	2	42432	0	0	42432
S/G/Y/R/B/O	NT_010463	AC009107	60433982	3			AC090069	60594620	1	89837	1635	6144	97616
S/G/Y/R/B/O	NT_010463	AC084063	60594620	2	chr16	NT_010463	AC009118	60654134	2	16329	0	38061	54390
S/G/Y/R/B/O	NT_010463	AC009118	60654134	2	chr16	NT_010463	AC010287	60762856	2	43064	0	0	43064
S/G/Y/R/B/O	NT_010463	AC009118	60654134	2	chr16	NT_010463	AC068659	60794770	2	41733	0	1248	42981
S/G/Y/R/B/O	NT_010463	AC009118	60654134	2			AB044947	60654134	3	31161	0	0	31161
S/G/Y/R/B/O	NT_010463	AC010287	60762856	2	chr16	NT_010463	AC068659	60794770	2	152678	0	1249	153927
S/G/Y/R/B/O	NT_010463	AC010287	60762856	2	chr16	NT_010463	AC009164	60930609	1	54517	0	34706	89223
S/G/Y/R/B/O	NT_010463	AC010287	60762856	2	chr16	NT_010463	AC012183	60926797	2	34582	0	46290	80872
S/G/Y/R/B/O	NT_010463	AC010287	60762856	2	chr2	NT_031761	AC104130	163115105	1	33463	1997	0	35460
S/G/Y/R/B/O	NT_010463	AC068659	60794770	2	chr16	NT_010463	AC012183	60926797	2	18480	0	46463	64943
S/G/Y/R/B/O	NT_010463	AC068659	60794770	2	chr16	NT_010463	AC009118	60654134	2	41733	0	1248	42981
S/G/Y/R/B/O	NT_010463	AC068659	60794770	2	chr16	NT_010463	AC009164	60930609	1	54981	0	34713	89694
S/G/Y/R/B/O	NT_010463	AC068659	60794770	2	chr2	NT_031761	AC104130	163115105	1	114207	1997	1237	117441
S/G/Y/R/B/O	NT_010463	AC012183	60926797	2	chr16	NT_010463	AC009164	60930609	1	53447	3471	44274	101192
S/G/Y/R/B/O	NT_010463	AC012183	60926797	2	chr16	NT_010463	AC010287	60762856	2	34582	0	46290	80872
S/G/Y/R/B/O	NT_010463	AC012183	60926797	2	chr16	NT_010463	AC092378	61032304	3	69119	0	0	69119
S/G/Y/R/B/O	NT_010463	AC012183	60926797	2	chr2	NT_031761	AC104130	163115105	1	87518	0	18426	105944
S/G/Y/R/B/O	NT_010463	AC009164	60930609	1	chr16	NT_010463	AC092378	61032304	3	0	0	0	0
S/G/Y/R/B/O	NT_010463	AC009164	60930609	1	chr16	NT_010463	AC010287	60762856	2	54517	0	34706	89223
S/G/Y/R/B/O	NT_010463	AC009164	60930609	1	chr16	NT_010463	AC068659	60794770	2	54981	0	34713	89694
S/G/Y/R/B/O	NT_010463	AC009164	60930609	1	chr2	NT_031761	AC104130	163115105	1	90374	5732	39511	135617
S/G/Y/R/B/O	NT_010463	AC092378	61032304	3	chr16	NT_010463	AC012323	61232173	3	87453	0	0	87453
S/G/Y/R/B/O	NT_010463	AC092378	61032304	3	chr16	NT_010463	AC012183	60926797	2	69119	0	0	69119
S/G/Y/R/B/O	NT_010463	AC012323	61232173	3	chr16	NT_010463	AC106793	61340719	1	26582	0	19232	45814
S/G/Y/R/B/O	NT_010463	AC106793	61340719	1	chr16	NT_010463	AC009147	61430752	3	0	0	0	0
S/G/Y/R/B/O	NT_010463	AC106793	61340719	1	chr16	NT_010463	AC092121	58990782	1	35532	0	4157	39689
S/G/Y/R/B/O	NT_010463	AC009147	61430752	3	chr16	NT_010463	AC040163	61594471	3	55745	0	0	55745
S/G/Y/R/B/O	NT_010463	AC009147	61430752	3	chr16	NT_010463	AC092121	58990782	1	29714	1723	0	31437
S/G/Y/R/B/O	NT_010463	AC009147	61430752	3			AC009096	58990782	1	67990	11009	9863	88862
S/G/Y/R/B/O	NT_010463	AC009147	61430752	3			AC040172	61594471	3	138610	0	0	138610
S/G/Y/R/B/O	NT_010463	AC040163	61594471	3	chr16	NT_010463	AC040171	61715560	3	17334	0	0	17334
S/G/Y/R/B/O	NT_010463	AC040163	61594471	3			AC009096	58990782	1	67175	5450	25928	98553
S/G/Y/R/B/O	NT_010463	AC040163	61594471	3			AC022914	61430752	1	101543	0	1272	102815
S/G/Y/R/B/O	NT_010463	AC040163	61594471	3			AC040172	61715560	3	62132	0	0	62132
S/G/Y/R/B/O	NT_010463	AC040171	61715560	3	chr16	NT_010463	AC026457	61849594	3	57553	0	0	57553
S/G/Y/R/B/O	NT_010463	AC040171	61715560	3			AC022914	61715560	1	92426	0	0	92426
S/G/Y/R/B/O	NT_010463	AC026457	61849594	3	chr16	NT_010463	AC092350	61963473	3	0	0	0	0
S/G/Y/R/B/O	NT_010463	AC026457	61849594	3			AC022914	61594471	1	18548	0	0	18548
S/G/Y/R/B/O	NT_010463	AC092350	61963473	3	chr16	NT_010463	AC009069	62119203	3	22018	0	0	22018
S/G/Y/R/B/O	NT_010463	AC009069	62119203	3	chr16	NT_010463	AC009094	62272058	3	73658	0	0	73658
S/G/Y/R/B/O	NT_010463	AC009069	62119203	3			AC013649	62272058	1	41651	0	0	41651
S/G/Y/R/B/O	NT_010463	AC009094	62272058	3	chr16	NT_010463	AC018554	62396471	3	0	0	0	0
S/G/Y/R/B/O	NT_010463	AC009094	62272058	3			AC009049	61963473	3	99165	0	0	99165
S/G/Y/R/B/O	NT_010463	AC009094	62272058	3			AC013649	62119203	1	153178	0	0	153178
S/G/Y/R/B/O	NT_010463	AC018554	62396471	3	chr16	NT_010463	AC009081	62607240	3	26054	0	0	26054
S/G/Y/R/B/O	NT_010463	AC018554	62396471	3			AC013629	62607240	1	152646	0	0	152646
S/G/Y/R/B/O	NT_010463	AC009081	62607240	3	chr16	NT_010463	AC012105	62747365	1	60280	0	0	60280
S/G/Y/R/B/O	NT_010463	AC009081	62607240	3	chr16	NT_010463	AC018555	62753755	2	58882	0	0	58882
S/G/Y/R/B/O	NT_010463	AC012105	62747365	1	chr16	NT_010463	AC018555	62753755	2	79740	5580	38889	124209
S/G/Y/R/B/O	NT_010463	AC012105	62747365	1	chr16	NT_010463	AC009080	62848218	3	13947	0	0	13947
S/G/Y/R/B/O	NT_010463	AC018555	62753755	2	chr16	NT_010463	AC009080	62848218	3	4928	0	22960	27888
S/G/Y/R/B/O	NT_010463	AC018555	62753755	2	chr16	NT_010463	AC009081	62607240	3	58882	0	0	58882
S/G/Y/R/B/O	NT_010463	AC009080	62848218	3	chr16	NT_010463	AC009156	63026318	3	84047	0	0	84047
S/G/Y/R/B/O	NT_010463	AC009080	62848218	3	chr16	NT_010463	AC012105	62747365	1	13947	0	0	13947
S/G/Y/R/B/O	NT_010463	AC009156	63026318	3	chr16	NT_010463	AC009169	63126797	3	65190	0	0	65190
S/G/Y/R/B/O	NT_010463	AC009156	63026318	3			AC009664	63126797	1	47955	0	0	47955
S/G/Y/R/B/O	NT_010463	AC009169	63126797	3	chr16	NT_010463	AC026473	63237068	3	108993	0	0	108993
S/G/Y/R/B/O	NT_010463	AC009169	63126797	3			AC009664	63026318	1	167868	1917	2487	172272
S/G/Y/R/B/O	NT_010463	AC009169	63126797	3			AC015622	63026318	1	30274	5194	0	35468
S/G/Y/R/B/O	NT_010463	AC009169	63126797	3			AC104639	63237068	3	124882	0	0	124882
S/G/Y/R/B/O	NT_010463	AC026473	63237068	3	chr16	NT_010463	AC097275	63298466	3	0	0	0	0
S/G/Y/R/B/O	NT_010463	AC026473	63237068	3			AC009664	63126797	1	100918	1917	2488	105323
S/G/Y/R/B/O	NT_010463	AC026473	63237068	3			AC015622	63126797	1	72171	5194	0	77365
S/G/Y/R/B/O	NT_010463	AC026473	63237068	3			AC104639	63126797	3	170147	0	0	170147
S/G/Y/R/B/O	NT_010463	AC097275	63298466	3	chr16	NT_010463	AC040166	63439675	3	100864	0	0	100864
S/G/Y/R/B/O	NT_010463	AC097275	63298466	3	chr16	NT_010463	AC009040	63674094	2	64846	5195	0	70041
S/G/Y/R/B/O	NT_010463	AC097275	63298466	3	chr10	NT_024115	AC025102	4001815	1	123584	4705	11286	139575
S/G/Y/R/B/O	NT_010463	AC040166	63439675	3	chr16	NT_010463	AC026475	63475167	3	35498	0	0	35498
S/G/Y/R/B/O	NT_010463	AC040166	63439675	3	chr16	NT_010463	AC009040	63674094	2	104975	5195	0	110170
S/G/Y/R/B/O	NT_010463	AC040166	63439675	3	chr10	NT_024115	AC025102	4001815	1	84573	2488	0	87061
S/G/Y/R/B/O	NT_010463	AC026475	63475167	3	chr16	NT_010463	AC016647	63599280	3	90322	0	0	90322
S/G/Y/R/B/O	NT_010463	AC026475	63475167	3	chr16	NT_010463	AC009040	63674094	2	105926	2532	2998	111456
S/G/Y/R/B/O	NT_010463	AC016647	63599280	3	chr16	NT_010463	AC092136	63669367	1	6983	0	1207	8190
S/G/Y/R/B/O	NT_010463	AC016647	63599280	3	chr16	NT_010463	AC009040	63674094	2	40286	2532	0	42818
S/G/Y/R/B/O	NT_010463	AC092136	63669367	1	chr16	NT_010463	AC009040	63674094	2	0	0	0	0
S/G/Y/R/B/O	NT_010463	AC092136	63669367	1	chr16	NT_010463	AC092125	63842218	1	21455	2136	1780	25371
S/G/Y/R/B/O	NT_010463	AC092136	63669367	1	chr16	NT_010463	AC092371	63679267	3	63242	3699	2948	69889
S/G/Y/R/B/O	NT_010463	AC009040	63674094	2	chr16	NT_010463	AC092371	63679267	3	0	0	0	0
S/G/Y/R/B/O	NT_010463	AC009040	63674094	2	chr16	NT_010463	AC016647	63599280	3	40286	2532	0	42818
S/G/Y/R/B/O	NT_010463	AC009040	63674094	2	chr10	NT_024115	AC025102	4001815	1	26636	2538	0	29174
S/G/Y/R/B/O	NT_010463	AC009040	63674094	2	chr16	NT_010463	AC026475	63475167	3	105926	2532	2998	111456
S/G/Y/R/B/O	NT_010463	AC009040	63674094	2	chr16	NT_010463	AC040166	63439675	3	104975	5195	0	110170
S/G/Y/R/B/O	NT_010463	AC009040	63674094	2	chr16	NT_010463	AC097275	63298466	3	64846	5195	0	70041
S/G/Y/R/B/O	NT_010463	AC092371	63679267	3	chr16	NT_010463	AC092125	63842218	1	48107	4433	8071	60611
S/G/Y/R/B/O	NT_010463	AC092371	63679267	3	chr16	NT_010463	AC092136	63669367	1	63242	3699	2948	69889
S/G/Y/R/B/O	NT_010463	AC092125	63842218	1	chr16	NT_010463	AC010652	63850313	1	15250	1609	11300	28159
S/G/Y/R/B/O	NT_010463	AC092125	63842218	1	chr16	NT_010463	AC092129	63857380	1	37948	4691	5978	48617
S/G/Y/R/B/O	NT_010463	AC092125	63842218	1	chr16	NT_010463	AC092136	63669367	1	21455	2136	1780	25371
S/G/Y/R/B/O	NT_010463	AC010652	63850313	1	chr16	NT_010463	AC092129	63857380	1	68013	6444	75237	149694
S/G/Y/R/B/O	NT_010463	AC010652	63850313	1	chr16	NT_010463	AC012174	63985535	3	16316	0	19996	36312
S/G/Y/R/B/O	NT_010463	AC092129	63857380	1	chr16	NT_010463	AC012174	63985535	3	48011	0	18325	66336
S/G/Y/R/B/O	NT_010463	AC092129	63857380	1	chr16	NT_010463	AC092125	63842218	1	37948	4691	5978	48617
S/G/Y/R/B/O	NT_010463	AC012174	63985535	3	chr16	NT_010463	AC040161	64153689	3	68784	0	0	68784
S/G/Y/R/B/O	NT_010463	AC012174	63985535	3	chr16	NT_010463	AC010652	63850313	1	16316	0	19996	36312
S/G/Y/R/B/O	NT_010463	AC040161	64153689	3