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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010542 | AC009113 | 92244346 | 2 | chr16 | NT_010542 | AC007905 | 92305735 | 2 | 39303 | 14925 | 21347 | 75575 |
| S/G/Y/R/B/O |
NT_010542 | AC009113 | 92244346 | 2 | chr16 | NT_010542 | AC103890 | 92442035 | 3 | 117341 | 0 | 0 | 117341 |
| S/G/Y/R/B/O |
NT_010542 | AC009113 | 92244346 | 2 |   |   | AC023256 | 92512494 | 1 | 70520 | 0 | 0 | 70520 |
| S/G/Y/R/B/O |
NT_010542 | AC007905 | 92305735 | 2 | chr16 | NT_010542 | AC103890 | 92442035 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010542 | AC103890 | 92442035 | 3 | chr16 | NT_010542 | AC009098 | 92512494 | 1 | 87369 | 2932 | 109575 | 199876 |
| S/G/Y/R/B/O |
NT_010542 | AC103890 | 92442035 | 3 | chr16 | NT_010542 | AC009113 | 92244346 | 2 | 117341 | 0 | 0 | 117341 |
| S/G/Y/R/B/O |
NT_010542 | AC103890 | 92442035 | 3 | chr16 | NT_010542 | AC074300 | 92526941 | 2 | 21896 | 0 | 0 | 21896 |
| S/G/Y/R/B/O |
NT_010542 | AC103890 | 92442035 | 3 | chr16 | NT_010542 | AC092120 | 92513084 | 2 | 21884 | 0 | 0 | 21884 |
| S/G/Y/R/B/O |
NT_010542 | AC103890 | 92442035 | 3 |   |   | AC023256 | 92244346 | 1 | 237195 | 0 | 0 | 237195 |
| S/G/Y/R/B/O |
NT_010542 | AC103890 | 92442035 | 3 |   |   | AC105409 | 92513084 | 2 | 239592 | 0 | 0 | 239592 |
| S/G/Y/R/B/O |
NT_010542 | AC009098 | 92512494 | 1 | chr16 | NT_010542 | AC092120 | 92513084 | 2 | 33381 | 0 | 5521 | 38902 |
| S/G/Y/R/B/O |
NT_010542 | AC009098 | 92512494 | 1 | chr16 | NT_010542 | AC074300 | 92526941 | 2 | 30787 | 0 | 7701 | 38488 |
| S/G/Y/R/B/O |
NT_010542 | AC009098 | 92512494 | 1 | chr16 | NT_010542 | AC092123 | 92534092 | 1 | 10120 | 0 | 0 | 10120 |
| S/G/Y/R/B/O |
NT_010542 | AC009098 | 92512494 | 1 |   |   | AC023256 | 92244346 | 1 | 34327 | 5014 | 39685 | 79026 |
| S/G/Y/R/B/O |
NT_010542 | AC009098 | 92512494 | 1 |   |   | AC105409 | 92442035 | 2 | 43685 | 1466 | 55846 | 100997 |
| S/G/Y/R/B/O |
NT_010542 | AC092120 | 92513084 | 2 | chr16 | NT_010542 | AC074300 | 92526941 | 2 | 47065 | 8847 | 24701 | 80613 |
| S/G/Y/R/B/O |
NT_010542 | AC092120 | 92513084 | 2 | chr16 | NT_010542 | AC103890 | 92442035 | 3 | 21884 | 0 | 0 | 21884 |
| S/G/Y/R/B/O |
NT_010542 | AC092120 | 92513084 | 2 |   |   | AC023256 | 92512494 | 1 | 17139 | 2265 | 7498 | 26902 |
| S/G/Y/R/B/O |
NT_010542 | AC092120 | 92513084 | 2 |   |   | AC105409 | 92442035 | 2 | 10927 | 0 | 0 | 10927 |
| S/G/Y/R/B/O |
NT_010542 | AC074300 | 92526941 | 2 | chr16 | NT_010542 | AC092123 | 92534092 | 1 | 35982 | 8841 | 15238 | 60061 |
| S/G/Y/R/B/O |
NT_010542 | AC074300 | 92526941 | 2 | chr16 | NT_010542 | AC009098 | 92512494 | 1 | 30787 | 0 | 7701 | 38488 |
| S/G/Y/R/B/O |
NT_010542 | AC074300 | 92526941 | 2 | chr16 | NT_010542 | AC103890 | 92442035 | 3 | 21896 | 0 | 0 | 21896 |
| S/G/Y/R/B/O |
NT_010542 | AC074300 | 92526941 | 2 |   |   | AC023256 | 92512494 | 1 | 11579 | 2263 | 5977 | 19819 |
| S/G/Y/R/B/O |
NT_010542 | AC092123 | 92534092 | 1 | chr16 | NT_010542 | AC010538 | 92667745 | 2 | 43551 | 0 | 10000 | 53551 |
| S/G/Y/R/B/O |
NT_010542 | AC092123 | 92534092 | 1 | chr16 | NT_010542 | AC009098 | 92512494 | 1 | 10120 | 0 | 0 | 10120 |
| S/G/Y/R/B/O |
NT_010542 | AC092123 | 92534092 | 1 | chr16 | NT_010542 | AC068559 | 92714091 | 1 | 20220 | 0 | 20746 | 40966 |
| S/G/Y/R/B/O |
NT_010542 | AC092123 | 92534092 | 1 |   |   | AC023256 | 92711761 | 1 | 13899 | 0 | 0 | 13899 |
| S/G/Y/R/B/O |
NT_010542 | AC010538 | 92667745 | 2 | chr16 | NT_010542 | AC012300 | 92711761 | 1 | 43551 | 2822 | 27796 | 74169 |
| S/G/Y/R/B/O |
NT_010542 | AC010538 | 92667745 | 2 | chr16 | NT_010542 | AC068559 | 92714091 | 1 | 49769 | 4371 | 56001 | 110141 |
| S/G/Y/R/B/O |
NT_010542 | AC010538 | 92667745 | 2 | chr16 | NT_010542 | AC103888 | 92778317 | 2 | 70893 | 5757 | 3274 | 79924 |
| S/G/Y/R/B/O |
NT_010542 | AC012300 | 92711761 | 1 | chr16 | NT_010542 | AC068559 | 92714091 | 1 | 22337 | 2021 | 36105 | 60463 |
| S/G/Y/R/B/O |
NT_010542 | AC068559 | 92714091 | 1 | chr16 | NT_010542 | AC103888 | 92778317 | 2 | 23013 | 4830 | 13740 | 41583 |
| S/G/Y/R/B/O |
NT_010542 | AC068559 | 92714091 | 1 | chr16 | NT_010542 | AC010538 | 92667745 | 2 | 49769 | 4371 | 56001 | 110141 |
| S/G/Y/R/B/O |
NT_010542 | AC068559 | 92714091 | 1 | chr16 | NT_010542 | AC092123 | 92534092 | 1 | 20220 | 0 | 20746 | 40966 |
| S/G/Y/R/B/O |
NT_010542 | AC103888 | 92778317 | 2 | chr16 | NT_010542 | AC005360 | 92873943 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010542 | AC103888 | 92778317 | 2 | chr16 | NT_010542 | AC010538 | 92667745 | 2 | 70893 | 5757 | 3274 | 79924 |
| S/G/Y/R/B/O |
NT_010542 | AC005360 | 92873943 | 3 | chr16 | NT_010542 | AC005567 | 92917123 | 3 | 9652 | 0 | 0 | 9652 |
| S/G/Y/R/B/O |
NT_010542 | AC005567 | 92917123 | 3 | chr16 | NT_010542 | AC005565 | 92948544 | 3 | 4811 | 0 | 0 | 4811 |
| S/G/Y/R/B/O |
NT_010542 | AC005565 | 92948544 | 3 | chr16 | NT_010542 | AC092385 | 92983163 | 3 | 39424 | 0 | 0 | 39424 |
| S/G/Y/R/B/O |
NT_010542 | AC092385 | 92983163 | 3 | chr16 | NT_010542 | AC092143 | 93040942 | 3 | 28583 | 0 | 0 | 28583 |
| S/G/Y/R/B/O |
NT_010542 | AC092143 | 93040942 | 3 | chr16 | NT_010542 | AC007046 | 93195387 | 2 | 9255 | 0 | 0 | 9255 |
| S/G/Y/R/B/O |
NT_010542 | AC092143 | 93040942 | 3 |   |   | AC006838 | 93040942 | 2 | 12480 | 2824 | 0 | 15304 |
| S/G/Y/R/B/O |
NT_010542 | AC092143 | 93040942 | 3 |   |   | AC007181 | 93195387 | 2 | 34894 | 0 | 0 | 34894 |
| S/G/Y/R/B/O |
NT_010542 | AC092143 | 93040942 | 3 |   |   | AC008145 | 93195387 | 2 | 16520 | 2029 | 19234 | 37783 |
| S/G/Y/R/B/O |
NT_010542 | AC092143 | 93040942 | 3 |   |   | AC087250 | 93195387 | 2 | 20423 | 2031 | 16887 | 39341 |
| S/G/Y/R/B/O |
NT_010542 | AC092143 | 93040942 | 3 |   |   | AF263461 | 92983163 | 3 | 13091 | 0 | 0 | 13091 |
| S/G/Y/R/B/O |
NT_010542 | AC007046 | 93195387 | 2 | chr16 | NT_010542 | AC007657 | 93213856 | 2 | 0 | 0 | 1447 | 1447 |
| S/G/Y/R/B/O |
NT_010542 | AC007657 | 93213856 | 2 |   |   |   |   |   |   |   |   |   |
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