Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_006497

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_006497	AC023629	63092406	1	chr5	NT_006497	AC010273	63103270	3	84529	11697	6888	103114
S/G/Y/R/B/O	NT_006497	AC023629	63092406	1	chr5	NT_006497	AC022107	63248038	3	75994	14073	8390	98457
S/G/Y/R/B/O	NT_006497	AC023629	63092406	1	chr5	NT_006497	AC024583	63287129	2	96673	17866	10800	125339
S/G/Y/R/B/O	NT_006497	AC010273	63103270	3	chr5	NT_006497	AC022107	63248038	3	83185	0	0	83185
S/G/Y/R/B/O	NT_006497	AC010273	63103270	3	chr5	NT_006497	AC024583	63287129	2	133885	0	0	133885
S/G/Y/R/B/O	NT_006497	AC022107	63248038	3	chr5	NT_006497	AC024583	63287129	2	121941	0	0	121941
S/G/Y/R/B/O	NT_006497	AC022107	63248038	3	chr5	NT_006497	AC023629	63092406	1	75994	14073	8390	98457
S/G/Y/R/B/O	NT_006497	AC024583	63287129	2	chr5	NT_006497	AC093223	63337547	2	47652	1541	10086	59279
S/G/Y/R/B/O	NT_006497	AC024583	63287129	2	chr5	NT_006497	AC010273	63103270	3	133885	0	0	133885
S/G/Y/R/B/O	NT_006497	AC024583	63287129	2	chr5	NT_006497	AC023629	63092406	1	96673	17866	10800	125339
S/G/Y/R/B/O	NT_006497	AC093223	63337547	2	chr5	NT_006497	AC109996	63348509	2	48624	7047	12987	68658
S/G/Y/R/B/O	NT_006497	AC109996	63348509	2	chr5	NT_006497	AC015470	63415258	1	61205	4270	2278	67753
S/G/Y/R/B/O	NT_006497	AC109996	63348509	2	chr5	NT_006497	AC010355	63494996	3	36723	0	0	36723
S/G/Y/R/B/O	NT_006497	AC015470	63415258	1	chr5	NT_006497	AC010355	63494996	3	80115	2060	7821	89996
S/G/Y/R/B/O	NT_006497	AC010355	63494996	3	chr5	NT_006497	AC044797	63608359	3	48038	0	0	48038
S/G/Y/R/B/O	NT_006497	AC010355	63494996	3	chr5	NT_006497	AC011244	64399554	1	23233	0	1997	25230
S/G/Y/R/B/O	NT_006497	AC010355	63494996	3	chr5	NT_006497	AC109996	63348509	2	36723	0	0	36723
S/G/Y/R/B/O	NT_006497	AC010355	63494996	3			AC012369	64399554	1	14209	0	18658	32867
S/G/Y/R/B/O	NT_006497	AC044797	63608359	3	chr5	NT_006497	AC016554	63799230	3	0	0	0	0
S/G/Y/R/B/O	NT_006497	AC044797	63608359	3	chr5	NT_006497	AC004999	64142430	3	74557	0	0	74557
S/G/Y/R/B/O	NT_006497	AC044797	63608359	3	chr5	NT_006497	AC011244	64399554	1	45815	2017	9040	56872
S/G/Y/R/B/O	NT_006497	AC044797	63608359	3			AC005031	64142430	3	82768	0	0	82768
S/G/Y/R/B/O	NT_006497	AC044797	63608359	3			AC010272	64142430	2	45669	6026	6243	57938
S/G/Y/R/B/O	NT_006497	AC044797	63608359	3			AC012369	64399554	1	43387	1983	18772	64142
S/G/Y/R/B/O	NT_006497	AC044797	63608359	3			AC109487	64399554	2	63411	0	0	63411
S/G/Y/R/B/O	NT_006497	AC044797	63608359	3			U80017	64399554	3	130863	0	0	130863
S/G/Y/R/B/O	NT_006497	AC016554	63799230	3	chr5	NT_006497	AC010217	63860984	3	0	0	0	0
S/G/Y/R/B/O	NT_006497	AC016554	63799230	3	chr5	NT_006497	AC004999	64142430	3	106113	0	0	106113
S/G/Y/R/B/O	NT_006497	AC016554	63799230	3	chr5	NT_006497	AC022119	64174383	3	74209	0	0	74209
S/G/Y/R/B/O	NT_006497	AC016554	63799230	3			AC010272	64142430	2	37064	2457	11582	51103
S/G/Y/R/B/O	NT_006497	AC016554	63799230	3			AC093202	64174383	1	25134	0	0	25134
S/G/Y/R/B/O	NT_006497	AC010217	63860984	3	chr5	NT_006497	AC093280	63904979	1	0	0	8933	8933
S/G/Y/R/B/O	NT_006497	AC010217	63860984	3	chr5	NT_006497	AC004999	64142430	3	118576	0	0	118576
S/G/Y/R/B/O	NT_006497	AC010217	63860984	3			AC010272	64142430	2	64708	8573	11461	84742
S/G/Y/R/B/O	NT_006497	AC010217	63860984	3			AC093202	64142430	1	84057	0	0	84057
S/G/Y/R/B/O	NT_006497	AC010217	63860984	3			AC109487	63904979	2	43917	0	0	43917
S/G/Y/R/B/O	NT_006497	AC093280	63904979	1	chr5	NT_006497	AC091873	63924182	3	0	0	0	0
S/G/Y/R/B/O	NT_006497	AC093280	63904979	1	chr5	NT_023097	AC018883	20008536	1	14966	0	0	14966
S/G/Y/R/B/O	NT_006497	AC093280	63904979	1			AC092362	19817055	1	18469	0	0	18469
S/G/Y/R/B/O	NT_006497	AC091873	63924182	3	chr5	NT_006497	AC008783	64091067	3	15907	0	0	15907
S/G/Y/R/B/O	NT_006497	AC091873	63924182	3	chr5	NT_023097	AC091869	19819403	1	95098	0	0	95098
S/G/Y/R/B/O	NT_006497	AC091873	63924182	3			AC109452	19819403	2	122611	0	6363	128974
S/G/Y/R/B/O	NT_006497	AC008783	64091067	3	chr5	NT_006497	AC004999	64142430	3	0	0	0	0
S/G/Y/R/B/O	NT_006497	AC008783	64091067	3			AC109452	63924182	2	58501	0	0	58501
S/G/Y/R/B/O	NT_006497	AC004999	64142430	3	chr5	NT_006497	AC022119	64174383	3	97508	0	0	97508
S/G/Y/R/B/O	NT_006497	AC004999	64142430	3	chr5	NT_006497	AC010217	63860984	3	118576	0	0	118576
S/G/Y/R/B/O	NT_006497	AC004999	64142430	3	chr5	NT_006497	AC016554	63799230	3	106113	0	0	106113
S/G/Y/R/B/O	NT_006497	AC004999	64142430	3	chr5	NT_006497	AC044797	63608359	3	74557	0	0	74557
S/G/Y/R/B/O	NT_006497	AC004999	64142430	3			AC010272	63860984	2	51366	6049	11465	68880
S/G/Y/R/B/O	NT_006497	AC004999	64142430	3			AC093202	63608359	1	25155	0	0	25155
S/G/Y/R/B/O	NT_006497	AC004999	64142430	3			U80017	63608359	3	62331	0	0	62331
S/G/Y/R/B/O	NT_006497	AC022119	64174383	3	chr5	NT_006497	AC010237	64226245	3	104111	0	0	104111
S/G/Y/R/B/O	NT_006497	AC022119	64174383	3	chr5	NT_006497	AC016554	63799230	3	74209	0	0	74209
S/G/Y/R/B/O	NT_006497	AC022119	64174383	3			AC010272	64226245	2	102130	8578	16963	127671
S/G/Y/R/B/O	NT_006497	AC022119	64174383	3			AC093202	63799230	1	25150	0	0	25150
S/G/Y/R/B/O	NT_006497	AC010237	64226245	3	chr5	NT_006497	AC023817	64335023	2	7205	0	0	7205
S/G/Y/R/B/O	NT_006497	AC010237	64226245	3			AC010272	63904979	2	70639	6123	0	76762
S/G/Y/R/B/O	NT_006497	AC010237	64226245	3			AL161433	64467750	1	22130	0	17966	40096
S/G/Y/R/B/O	NT_006497	AC023817	64335023	2	chr5	NT_006497	AC011244	64399554	1	41433	2217	0	43650
S/G/Y/R/B/O	NT_006497	AC023817	64335023	2	chr5	NT_006497	AC044800	64406352	1	51663	0	4944	56607
S/G/Y/R/B/O	NT_006497	AC023817	64335023	2	chr5	NT_006497	AC108108	64467750	1	26493	0	37793	64286
S/G/Y/R/B/O	NT_006497	AC023817	64335023	2			AC093247	64406352	3	79257	0	0	79257
S/G/Y/R/B/O	NT_006497	AC023817	64335023	2			AL009030	64467750	3	124081	0	0	124081
S/G/Y/R/B/O	NT_006497	AC023817	64335023	2			AL161433	64467750	1	31265	0	0	31265
S/G/Y/R/B/O	NT_006497	AC011244	64399554	1	chr5	NT_006497	AC044800	64406352	1	30845	6471	27064	64380
S/G/Y/R/B/O	NT_006497	AC011244	64399554	1	chr5	NT_006497	AC010355	63494996	3	23233	0	1997	25230
S/G/Y/R/B/O	NT_006497	AC011244	64399554	1	chr5	NT_006497	AC044797	63608359	3	45815	2017	9040	56872
S/G/Y/R/B/O	NT_006497	AC011244	64399554	1			AC012369	63494996	1	21563	0	2246	23809
S/G/Y/R/B/O	NT_006497	AC011244	64399554	1			AC093247	35550615	3	30151	1493	6670	38314
S/G/Y/R/B/O	NT_006497	AC011244	64399554	1			AC109487	64467750	2	30419	0	8884	39303
S/G/Y/R/B/O	NT_006497	AC011244	64399554	1			AL009030	64467750	3	30118	4431	6661	41210
S/G/Y/R/B/O	NT_006497	AC011244	64399554	1			AL161433	35393908	1	30187	8105	9925	48217
S/G/Y/R/B/O	NT_006497	AC011244	64399554	1			U80017	35393908	3	21927	0	0	21927
S/G/Y/R/B/O	NT_006497	AC044800	64406352	1	chr5	NT_006497	AC108108	64467750	1	70989	0	5264	76253
S/G/Y/R/B/O	NT_006497	AC044800	64406352	1	chr5	NT_006497	AC023817	64335023	2	51663	0	4944	56607
S/G/Y/R/B/O	NT_006497	AC044800	64406352	1	chr5	NT_006713	AC108106	73521387	2	12175	0	0	12175
S/G/Y/R/B/O	NT_006497	AC044800	64406352	1			AC093247	35550615	3	33715	0	4674	38389
S/G/Y/R/B/O	NT_006497	AC044800	64406352	1			AL009030	64467750	3	77113	0	5223	82336
S/G/Y/R/B/O	NT_006497	AC044800	64406352	1			AL161433	64467750	1	50742	0	4943	55685
S/G/Y/R/B/O	NT_006497	AC108108	64467750	1
S/G/Y/R/B/O	NT_006497	AC108108	64467750	1	chr5	NT_006497	AC023817	64335023	2	26493	0	37793	64286
S/G/Y/R/B/O	NT_006497	AC108108	64467750	1			AC093247	35550615	3	51454	0	0	51454
S/G/Y/R/B/O	NT_006497	AC108108	64467750	1			AL009030	19632512	3	71331	0	95365	166696
S/G/Y/R/B/O	NT_006497	AC108108	64467750	1			AL161433	19632512	1	44651	1599	9121	55371