Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_006731

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_006731	AC012605	94861319	1	chr5	NT_006731	AC021564	94861613	1	18713	1923	1001	21637
S/G/Y/R/B/O	NT_006731	AC012605	94861319	1	chr5	NT_006731	AC020919	94978291	2	46766	0	15500	62266
S/G/Y/R/B/O	NT_006731	AC012605	94861319	1			AC008500	93834859	1	34476	0	15501	49977
S/G/Y/R/B/O	NT_006731	AC012605	94861319	1			AC020933	94978291	1	14446	0	0	14446
S/G/Y/R/B/O	NT_006731	AC021564	94861613	1	chr5	NT_006731	AC104127	94872979	1	0	0	0	0
S/G/Y/R/B/O	NT_006731	AC021564	94861613	1	chr5	NT_006731	AC012619	95070704	3	17254	1923	0	19177
S/G/Y/R/B/O	NT_006731	AC021564	94861613	1	chr5	NT_006731	AC020919	94978291	2	46934	5532	1001	53467
S/G/Y/R/B/O	NT_006731	AC021564	94861613	1	chr5	NT_006731	AC106749	96903069	3	35255	1809	0	37064
S/G/Y/R/B/O	NT_006731	AC021564	94861613	1	chr5	NT_006731	AC108122	96932047	3	14605	0	0	14605
S/G/Y/R/B/O	NT_006731	AC021564	94861613	1			AC008500	95050808	1	157790	5895	0	163685
S/G/Y/R/B/O	NT_006731	AC104127	94872979	1	chr5	NT_006731	AC013344	94907470	1	67996	0	6698	74694
S/G/Y/R/B/O	NT_006731	AC104127	94872979	1	chr5	NT_006731	AC010283	95838614	3	53286	0	0	53286
S/G/Y/R/B/O	NT_006731	AC104127	94872979	1	chr5	NT_006731	AC010448	95996510	3	12272	0	0	12272
S/G/Y/R/B/O	NT_006731	AC104127	94872979	1	chr5	NT_006731	AC021484	95752084	1	92098	0	8155	100253
S/G/Y/R/B/O	NT_006731	AC013344	94907470	1	chr5	NT_006731	AC020919	94978291	2	0	0	0	0
S/G/Y/R/B/O	NT_006731	AC013344	94907470	1	chr5	NT_006731	AC021484	95752084	1	26237	2474	1324	30035
S/G/Y/R/B/O	NT_006731	AC013344	94907470	1	chr5	NT_006731	AC021807	95591658	1	14023	0	0	14023
S/G/Y/R/B/O	NT_006731	AC020919	94978291	2	chr5	NT_006731	AC114961	95050808	1	70744	0	0	70744
S/G/Y/R/B/O	NT_006731	AC020919	94978291	2	chr5	NT_006731	AC012605	94861319	1	46766	0	15500	62266
S/G/Y/R/B/O	NT_006731	AC020919	94978291	2	chr5	NT_006731	AC012619	95070704	3	36855	0	0	36855
S/G/Y/R/B/O	NT_006731	AC020919	94978291	2	chr5	NT_006731	AC021564	94861613	1	46934	5532	1001	53467
S/G/Y/R/B/O	NT_006731	AC020919	94978291	2			AC008500	94872979	1	74509	0	0	74509
S/G/Y/R/B/O	NT_006731	AC020919	94978291	2			AC020933	95070704	1	24053	5375	15901	45329
S/G/Y/R/B/O	NT_006731	AC114961	95050808	1	chr5	NT_006731	AC012619	95070704	3	73243	0	0	73243
S/G/Y/R/B/O	NT_006731	AC114961	95050808	1	chr5	NT_006731	AC008516	95118237	2	53182	0	0	53182
S/G/Y/R/B/O	NT_006731	AC114961	95050808	1			AC008500	95050808	1	30911	0	0	30911
S/G/Y/R/B/O	NT_006731	AC114961	95050808	1			AC020933	94978291	1	61609	2778	2413	66800
S/G/Y/R/B/O	NT_006731	AC114961	95050808	1			AC106818	94861613	1	24946	0	0	24946
S/G/Y/R/B/O	NT_006731	AC012619	95070704	3	chr5	NT_006731	AC008516	95118237	2	0	0	0	0
S/G/Y/R/B/O	NT_006731	AC012619	95070704	3	chr5	NT_006731	AC020919	94978291	2	36855	0	0	36855
S/G/Y/R/B/O	NT_006731	AC012619	95070704	3	chr5	NT_006731	AC021564	94861613	1	17254	1923	0	19177
S/G/Y/R/B/O	NT_006731	AC012619	95070704	3			AC008500	94861613	1	26920	0	0	26920
S/G/Y/R/B/O	NT_006731	AC012619	95070704	3			AC020933	94978291	1	43922	2776	15908	62606
S/G/Y/R/B/O	NT_006731	AC008516	95118237	2	chr5	NT_006731	AC010242	95181579	1	127394	0	0	127394
S/G/Y/R/B/O	NT_006731	AC008516	95118237	2	chr5	NT_006731	AC114961	95050808	1	53182	0	0	53182
S/G/Y/R/B/O	NT_006731	AC008516	95118237	2			AC013682	94861319	1	41089	0	0	41089
S/G/Y/R/B/O	NT_006731	AC008516	95118237	2			AC024349	94978291	1	104160	11218	26763	142141
S/G/Y/R/B/O	NT_006731	AC008516	95118237	2			AC106818	114789546	1	73494	0	68543	142037
S/G/Y/R/B/O	NT_006731	AC010242	95181579	1	chr5	NT_006731	AC108102	95221732	3	135146	0	0	135146
S/G/Y/R/B/O	NT_006731	AC010242	95181579	1			AC013682	95118237	1	105468	5458	0	110926
S/G/Y/R/B/O	NT_006731	AC010242	95181579	1			AC024349	95118237	1	79085	11298	6108	96491
S/G/Y/R/B/O	NT_006731	AC010242	95181579	1			AC106818	114789546	1	100064	0	6361	106425
S/G/Y/R/B/O	NT_006731	AC108102	95221732	3	chr5	NT_006731	AC099501	95382788	3	0	0	0	0
S/G/Y/R/B/O	NT_006731	AC108102	95221732	3	chr5	NT_006731	AC106808	95411807	1	22938	0	0	22938
S/G/Y/R/B/O	NT_006731	AC108102	95221732	3			AC013682	95181579	1	150578	5458	0	156036
S/G/Y/R/B/O	NT_006731	AC108102	95221732	3			AC024349	95181579	1	45222	8692	0	53914
S/G/Y/R/B/O	NT_006731	AC108102	95221732	3			AC106818	95411807	1	90759	0	0	90759
S/G/Y/R/B/O	NT_006731	AC099501	95382788	3	chr5	NT_006731	AC106808	95411807	1	43952	0	0	43952
S/G/Y/R/B/O	NT_006731	AC099501	95382788	3			AC013682	95411807	1	15152	0	0	15152
S/G/Y/R/B/O	NT_006731	AC106808	95411807	1	chr5	NT_006731	AC114980	95478984	1	92180	0	7470	99650
S/G/Y/R/B/O	NT_006731	AC106808	95411807	1	chr5	NT_006731	AC019025	95490266	1	92134	1601	3796	97531
S/G/Y/R/B/O	NT_006731	AC106808	95411807	1	chr5	NT_006731	AC108102	95221732	3	22938	0	0	22938
S/G/Y/R/B/O	NT_006731	AC106808	95411807	1			AC013682	95411807	1	15151	0	0	15151
S/G/Y/R/B/O	NT_006731	AC114980	95478984	1	chr5	NT_006731	AC019025	95490266	1	159313	1577	7995	168885
S/G/Y/R/B/O	NT_006731	AC114980	95478984	1	chr5	NT_006731	AC093268	95585333	1	52904	0	1964	54868
S/G/Y/R/B/O	NT_006731	AC019025	95490266	1	chr5	NT_006731	AC093268	95585333	1	33667	1577	0	35244
S/G/Y/R/B/O	NT_006731	AC019025	95490266	1	chr5	NT_006731	AC021807	95591658	1	22674	0	0	22674
S/G/Y/R/B/O	NT_006731	AC019025	95490266	1	chr5	NT_006731	AC106808	95411807	1	92134	1601	3796	97531
S/G/Y/R/B/O	NT_006731	AC093268	95585333	1	chr5	NT_006731	AC021807	95591658	1	96970	4674	1308	102952
S/G/Y/R/B/O	NT_006731	AC093268	95585333	1	chr5	NT_006731	AC114980	95478984	1	52904	0	1964	54868
S/G/Y/R/B/O	NT_006731	AC021807	95591658	1	chr5	NT_006731	AC021484	95752084	1	0	0	0	0
S/G/Y/R/B/O	NT_006731	AC021807	95591658	1	chr5	NT_006731	AC013344	94907470	1	14023	0	0	14023
S/G/Y/R/B/O	NT_006731	AC021807	95591658	1	chr5	NT_006731	AC019025	95490266	1	22674	0	0	22674
S/G/Y/R/B/O	NT_006731	AC021484	95752084	1	chr5	NT_006731	AC010283	95838614	3	61807	0	0	61807
S/G/Y/R/B/O	NT_006731	AC021484	95752084	1	chr5	NT_006731	AC010448	95996510	3	48891	0	0	48891
S/G/Y/R/B/O	NT_006731	AC021484	95752084	1	chr5	NT_006731	AC013344	94907470	1	26237	2474	1324	30035
S/G/Y/R/B/O	NT_006731	AC021484	95752084	1	chr5	NT_006731	AC104127	94872979	1	92098	0	8155	100253
S/G/Y/R/B/O	NT_006731	AC010283	95838614	3	chr5	NT_006731	AC010448	95996510	3	137061	0	0	137061
S/G/Y/R/B/O	NT_006731	AC010283	95838614	3	chr5	NT_006731	AC007833	95999232	1	30940	1582	0	32522
S/G/Y/R/B/O	NT_006731	AC010283	95838614	3	chr5	NT_006731	AC104127	94872979	1	53286	0	0	53286
S/G/Y/R/B/O	NT_006731	AC010448	95996510	3	chr5	NT_006731	AC007833	95999232	1	27385	1582	0	28967
S/G/Y/R/B/O	NT_006731	AC010448	95996510	3	chr5	NT_006731	AC021484	95752084	1	48891	0	0	48891
S/G/Y/R/B/O	NT_006731	AC010448	95996510	3	chr5	NT_006731	AC104127	94872979	1	12272	0	0	12272
S/G/Y/R/B/O	NT_006731	AC007833	95999232	1	chr5	NT_006731	AC093311	96057155	1	93296	2699	3891	99886
S/G/Y/R/B/O	NT_006731	AC007833	95999232	1	chr5	NT_006731	AC010283	95838614	3	30940	1582	0	32522
S/G/Y/R/B/O	NT_006731	AC007833	95999232	1	chr5	NT_006731	AC018806	96130053	1	11046	2697	10985	24728
S/G/Y/R/B/O	NT_006731	AC093311	96057155	1	chr5	NT_006731	AC018806	96130053	1	61668	0	4274	65942
S/G/Y/R/B/O	NT_006731	AC093311	96057155	1	chr5	NT_006731	AC025766	96205987	3	20096	0	0	20096
S/G/Y/R/B/O	NT_006731	AC018806	96130053	1	chr5	NT_006731	AC025766	96205987	3	80786	0	0	80786
S/G/Y/R/B/O	NT_006731	AC018806	96130053	1	chr5	NT_006731	AC007833	95999232	1	11046	2697	10985	24728
S/G/Y/R/B/O	NT_006731	AC018806	96130053	1	chr5	NT_006731	AC008534	96289692	3	62925	0	0	62925
S/G/Y/R/B/O	NT_006731	AC025766	96205987	3	chr5	NT_006731	AC008534	96289692	3	3490	0	0	3490
S/G/Y/R/B/O	NT_006731	AC025766	96205987	3	chr5	NT_006731	AC093311	96057155	1	20096	0	0	20096
S/G/Y/R/B/O	NT_006731	AC008534	96289692	3	chr5	NT_006731	AC012312	96539603	3	106013	0	0	106013
S/G/Y/R/B/O	NT_006731	AC008534	96289692	3	chr5	NT_006731	AC011205	96614649	1	57630	0	0	57630
S/G/Y/R/B/O	NT_006731	AC008534	96289692	3	chr5	NT_006731	AC018806	96130053	1	62925	0	0	62925
S/G/Y/R/B/O	NT_006731	AC008534	96289692	3	chr5	NT_023162	AC027321	27755590	1	12995	0	1725	14720
S/G/Y/R/B/O	NT_006731	AC008534	96289692	3			AC008932	96057155	2	75253	0	0	75253
S/G/Y/R/B/O	NT_006731	AC008534	96289692	3			AC027303	96205987	2	94489	5135	53235	152859
S/G/Y/R/B/O	NT_006731	AC012312	96539603	3	chr5	NT_006731	AC011205	96614649	1	126916	0	0	126916
S/G/Y/R/B/O	NT_006731	AC012312	96539603	3	chr5	NT_006731	AC009680	96655454	1	10561	0	0	10561
S/G/Y/R/B/O	NT_006731	AC012312	96539603	3	chr5	NT_023162	AC027321	27755590	1	10405	0	0	10405
S/G/Y/R/B/O	NT_006731	AC012312	96539603	3			AC008932	96289692	2	132120	0	0	132120
S/G/Y/R/B/O	NT_006731	AC012312	96539603	3			AC027303	96614649	2	52397	5130	5568	63095
S/G/Y/R/B/O	NT_006731	AC011205	96614649	1	chr5	NT_006731	AC099507	96615425	2	20192	0	0	20192
S/G/Y/R/B/O	NT_006731	AC011205	96614649	1	chr5	NT_006731	AC008534	96289692	3	57630	0	0	57630
S/G/Y/R/B/O	NT_006731	AC011205	96614649	1			AC008932	96289692	2	49077	0	0	49077
S/G/Y/R/B/O	NT_006731	AC011205	96614649	1			AC027303	96539603	2	23296	2310	5567	31173
S/G/Y/R/B/O	NT_006731	AC099507	96615425	2	chr5	NT_006731	AC009680	96655454	1	102782	0	82841	185623
S/G/Y/R/B/O	NT_006731	AC099507	96615425	2	chr5	NT_006731	AC010429	96757085	3	49057	0	0	49057
S/G/Y/R/B/O	NT_006731	AC009680	96655454	1	chr5	NT_006731	AC010429	96757085	3	49952	0	0	49952
S/G/Y/R/B/O	NT_006731	AC009680	96655454	1	chr5	NT_006731	AC012312	96539603	3	10561	0	0	10561
S/G/Y/R/B/O	NT_006731	AC010429	96757085	3	chr5	NT_006731	AC106749	96903069	3	0	0	0	0
S/G/Y/R/B/O	NT_006731	AC010429	96757085	3	chr5	NT_006654	AC026446	107031438	3	41839	0	0	41839
S/G/Y/R/B/O	NT_006731	AC010429	96757085	3	chr5	NT_006731	AC099507	96615425	2	49057	0	0	49057
S/G/Y/R/B/O	NT_006731	AC106749	96903069	3	chr5	NT_006731	AC108122	96932047	3	62576	0	0	62576
S/G/Y/R/B/O	NT_006731	AC106749	96903069	3	chr5	NT_006731	AC021564	94861613	1	35255	1809	0	37064
S/G/Y/R/B/O	NT_006731	AC106749	96903069	3			AC008500	99787336	1	95221	0	0	95221
S/G/Y/R/B/O	NT_006731	AC108122	96932047	3	chr5	NT_006731	AC091824	96989177	3	0	0	0	0
S/G/Y/R/B/O	NT_006731	AC108122	96932047	3	chr5	NT_006731	AC021564	94861613	1	14605	0	0	14605
S/G/Y/R/B/O	NT_006731	AC108122	96932047	3			AC008500	96932047	1	62459	0	0	62459
S/G/Y/R/B/O	NT_006731	AC091824	96989177	3	chr5	NT_006731	AC026408	97095646	3	65493	0	0	65493
S/G/Y/R/B/O	NT_006731	AC091824	96989177	3			AC008500	96903069	1	48531	0	0	48531
S/G/Y/R/B/O	NT_006731	AC026408	97095646	3	chr5	NT_006731	AC012625	97159456	3	8853	0	0	8853
S/G/Y/R/B/O	NT_006731	AC012625	97159456	3	chr5	NT_006731	AC008517	97302374	3	8298	0	0	8298
S/G/Y/R/B/O	NT_006731	AC012625	97159456	3			AC024346	19793178	1	98619	8768	5158	112545
S/G/Y/R/B/O	NT_006731	AC008517	97302374	3	chr5	NT_006731	AC026781	97486372	3	14919	0	0	14919
S/G/Y/R/B/O	NT_006731	AC008517	97302374	3			AC010640	97095646	2	194987	0	0	194987
S/G/Y/R/B/O	NT_006731	AC026781	97486372	3	chr5	NT_006731	AC026780	97501300	3	2496	0	0	2496
S/G/Y/R/B/O	NT_006731	AC026781	97486372	3			AC010640	97302374	2	14773	0	0	14773
S/G/Y/R/B/O	NT_006731	AC026780	97501300	3
S/G/Y/R/B/O	NT_006731	AC026780	97501300	3			AC093507	97486372	1	42931	0	44219	87150