Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_006899

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_006899	AC013770	117014295	1	chr5	NT_006899	AC109473	117015828	3	109516	8604	8871	126991
S/G/Y/R/B/O	NT_006899	AC013770	117014295	1	chr5	NT_006899	AC008575	117186191	3	30777	8604	8867	48248
S/G/Y/R/B/O	NT_006899	AC013770	117014295	1			AC008461	35767259	2	19952	2607	0	22559
S/G/Y/R/B/O	NT_006899	AC013770	117014295	1			AC079463	124881395	3	48623	8600	8864	66087
S/G/Y/R/B/O	NT_006899	AC013770	117014295	1			AC113356	117015828	1	68023	9907	33020	110950
S/G/Y/R/B/O	NT_006899	AC109473	117015828	3	chr5	NT_006899	AC008575	117186191	3	88190	0	0	88190
S/G/Y/R/B/O	NT_006899	AC109473	117015828	3			AC008461	117015828	2	20185	2607	0	22792
S/G/Y/R/B/O	NT_006899	AC109473	117015828	3			AC079463	117014295	3	90842	0	0	90842
S/G/Y/R/B/O	NT_006899	AC109473	117015828	3			AC113356	117014295	1	71692	8325	61016	141033
S/G/Y/R/B/O	NT_006899	AC008575	117186191	3	chr5	NT_006899	AC008536	117266264	3	19172	0	0	19172
S/G/Y/R/B/O	NT_006899	AC008575	117186191	3	chr5	NT_006899	AC013770	117014295	1	30777	8604	8867	48248
S/G/Y/R/B/O	NT_006899	AC008575	117186191	3			AC008461	117014295	2	84148	5338	422	89908
S/G/Y/R/B/O	NT_006899	AC008575	117186191	3			AC079463	117014295	3	103746	0	0	103746
S/G/Y/R/B/O	NT_006899	AC008575	117186191	3			AC113356	117015828	1	47211	7941	81660	136812
S/G/Y/R/B/O	NT_006899	AC008536	117266264	3	chr5	NT_006899	AC106750	117425108	2	16201	0	0	16201
S/G/Y/R/B/O	NT_006899	AC008536	117266264	3			AC008451	117015828	2	66838	1883	23984	92705
S/G/Y/R/B/O	NT_006899	AC008536	117266264	3			AC008461	117015828	2	77478	4757	2284	84519
S/G/Y/R/B/O	NT_006899	AC008536	117266264	3			AC009038	117186191	1	53315	0	0	53315
S/G/Y/R/B/O	NT_006899	AC106750	117425108	2	chr5	NT_006899	AC010481	117467101	1	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC106750	117425108	2	chr5	NT_006899	AC015975	117591460	1	28980	0	4548	33528
S/G/Y/R/B/O	NT_006899	AC010481	117467101	1	chr5	NT_006899	AC015975	117591460	1	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC010481	117467101	1			AC008451	117591460	2	45773	0	0	45773
S/G/Y/R/B/O	NT_006899	AC010481	117467101	1			AC008461	117591460	2	23101	4966	2284	30351
S/G/Y/R/B/O	NT_006899	AC010481	117467101	1			AC009038	61211579	1	19643	0	2181	21824
S/G/Y/R/B/O	NT_006899	AC015975	117591460	1	chr5	NT_006899	AC084179	117616682	1	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC015975	117591460	1	chr5	NT_006899	AC079465	117722038	2	92145	1877	1957	95979
S/G/Y/R/B/O	NT_006899	AC015975	117591460	1	chr5	NT_006899	AC106750	117425108	2	28980	0	4548	33528
S/G/Y/R/B/O	NT_006899	AC015975	117591460	1			AC025185	61176379	1	92170	1877	1957	96004
S/G/Y/R/B/O	NT_006899	AC015975	117591460	1			AC067893	61176379	1	31109	4116	3796	39021
S/G/Y/R/B/O	NT_006899	AC084179	117616682	1	chr5	NT_006899	AC013343	117640856	1	7861	7808	6479	22148
S/G/Y/R/B/O	NT_006899	AC084179	117616682	1	chrX	NT_027215	AL390060	48468230	3	42605	7089	1067	50761
S/G/Y/R/B/O	NT_006899	AC084179	117616682	1	chrX	NT_033329	AL662886	48221599	2	48912	17636	2404	68952
S/G/Y/R/B/O	NT_006899	AC013343	117640856	1	chr5	NT_006899	AC079465	117722038	2	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC079465	117722038	2	chr5	NT_006899	AC010431	117892498	3	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC079465	117722038	2	chr5	NT_006899	AC015975	117591460	1	92145	1877	1957	95979
S/G/Y/R/B/O	NT_006899	AC079465	117722038	2			AC025185	117591460	1	184634	0	0	184634
S/G/Y/R/B/O	NT_006899	AC079465	117722038	2			AC067893	117591460	1	82823	6771	29788	119382
S/G/Y/R/B/O	NT_006899	AC010431	117892498	3	chr5	NT_006899	AC093208	118019248	3	68344	0	0	68344
S/G/Y/R/B/O	NT_006899	AC010431	117892498	3			AC008476	117591460	3	71413	0	0	71413
S/G/Y/R/B/O	NT_006899	AC010431	117892498	3			AC008602	117591460	3	88958	0	0	88958
S/G/Y/R/B/O	NT_006899	AC010431	117892498	3			AC067893	117591460	1	15179	2360	0	17539
S/G/Y/R/B/O	NT_006899	AC093208	118019248	3	chr5	NT_006899	AC010389	118062904	3	2185	0	0	2185
S/G/Y/R/B/O	NT_006899	AC093208	118019248	3			AC008602	118019248	3	85622	0	0	85622
S/G/Y/R/B/O	NT_006899	AC010389	118062904	3	chr5	NT_006899	AC093240	118194779	3	78418	0	0	78418
S/G/Y/R/B/O	NT_006899	AC093240	118194779	3	chr5	NT_006899	AC093528	118279898	3	30961	0	0	30961
S/G/Y/R/B/O	NT_006899	AC093240	118194779	3			AC022937	118062904	1	50169	4655	0	54824
S/G/Y/R/B/O	NT_006899	AC093528	118279898	3	chr5	NT_006899	AC094099	118396062	1	53322	0	0	53322
S/G/Y/R/B/O	NT_006899	AC093528	118279898	3	chr5	NT_006899	AC022955	118525987	1	42150	6350	1167	49667
S/G/Y/R/B/O	NT_006899	AC093528	118279898	3			AC022937	118279898	1	118673	11835	1251	131759
S/G/Y/R/B/O	NT_006899	AC094099	118396062	1	chr5	NT_006899	AC106789	118509244	1	0	1988	0	1988
S/G/Y/R/B/O	NT_006899	AC094099	118396062	1	chr5	NT_006899	AC022955	118525987	1	111788	22997	9341	144126
S/G/Y/R/B/O	NT_006899	AC094099	118396062	1	chr5	NT_006899	AC023952	118509671	1	54434	0	0	54434
S/G/Y/R/B/O	NT_006899	AC094099	118396062	1			AC022937	118396062	1	55626	4663	0	60289
S/G/Y/R/B/O	NT_006899	AC106789	118509244	1	chr5	NT_006899	AC023952	118509671	1	56803	1261	12669	70733
S/G/Y/R/B/O	NT_006899	AC106789	118509244	1	chr5	NT_006899	AC084135	118564239	1	40344	5451	1059	46854
S/G/Y/R/B/O	NT_006899	AC106789	118509244	1	chr5	NT_006899	AC094088	118697081	3	28748	0	8251	36999
S/G/Y/R/B/O	NT_006899	AC106789	118509244	1	chr5	NT_006899	AC113364	118850729	1	38612	2504	9350	50466
S/G/Y/R/B/O	NT_006899	AC023952	118509671	1	chr5	NT_006899	AC022955	118525987	1	43505	5164	2238	50907
S/G/Y/R/B/O	NT_006899	AC023952	118509671	1	chr5	NT_006899	AC084135	118564239	1	26216	11105	4345	41666
S/G/Y/R/B/O	NT_006899	AC023952	118509671	1	chr5	NT_006899	AC094088	118697081	3	47571	0	0	47571
S/G/Y/R/B/O	NT_006899	AC023952	118509671	1	chr5	NT_006899	AC094099	118396062	1	54434	0	0	54434
S/G/Y/R/B/O	NT_006899	AC023952	118509671	1	chr5	NT_006899	AC113364	118850729	1	16368	1849	6457	24674
S/G/Y/R/B/O	NT_006899	AC022955	118525987	1	chr5	NT_006899	AC084135	118564239	1	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC022955	118525987	1	chr5	NT_006899	AC093528	118279898	3	42150	6350	1167	49667
S/G/Y/R/B/O	NT_006899	AC022955	118525987	1	chr5	NT_006899	AC094099	118396062	1	111788	22997	9341	144126
S/G/Y/R/B/O	NT_006899	AC022955	118525987	1			AC022937	118850729	1	33006	8503	1167	42676
S/G/Y/R/B/O	NT_006899	AC084135	118564239	1	chr5	NT_006899	AC094088	118697081	3	51827	3916	4628	60371
S/G/Y/R/B/O	NT_006899	AC084135	118564239	1	chr5	NT_006899	AC023952	118509671	1	26216	11105	4345	41666
S/G/Y/R/B/O	NT_006899	AC084135	118564239	1	chr5	NT_006899	AC106789	118509244	1	40344	5451	1059	46854
S/G/Y/R/B/O	NT_006899	AC084135	118564239	1	chr5	NT_006899	AC113364	118850729	1	54097	2707	1207	58011
S/G/Y/R/B/O	NT_006899	AC094088	118697081	3	chr5	NT_006899	AC113364	118850729	1	41103	1848	8850	51801
S/G/Y/R/B/O	NT_006899	AC094088	118697081	3	chr5	NT_006899	AC023952	118509671	1	47571	0	0	47571
S/G/Y/R/B/O	NT_006899	AC094088	118697081	3	chr5	NT_006899	AC106789	118509244	1	28748	0	8251	36999
S/G/Y/R/B/O	NT_006899	AC113364	118850729	1	chr5	NT_006899	AC093527	118851048	3	29864	0	0	29864
S/G/Y/R/B/O	NT_006899	AC113364	118850729	1	chr5	NT_006899	AC023952	118509671	1	16368	1849	6457	24674
S/G/Y/R/B/O	NT_006899	AC113364	118850729	1	chr5	NT_006899	AC084135	118564239	1	54097	2707	1207	58011
S/G/Y/R/B/O	NT_006899	AC113364	118850729	1	chr5	NT_006899	AC106789	118509244	1	38612	2504	9350	50466
S/G/Y/R/B/O	NT_006899	AC093527	118851048	3	chr5	NT_006899	AC025761	119042083	3	93654	0	0	93654
S/G/Y/R/B/O	NT_006899	AC093527	118851048	3	chr5	NT_006899	AC021415	119061193	1	25013	2603	6182	33798
S/G/Y/R/B/O	NT_006899	AC093527	118851048	3	chr5	NT_006899	AC109482	119067321	2	27424	0	2177	29601
S/G/Y/R/B/O	NT_006899	AC093527	118851048	3			AC021085	123179712	3	45970	0	0	45970
S/G/Y/R/B/O	NT_006899	AC025761	119042083	3	chr5	NT_006899	AC021415	119061193	1	66138	2602	986	69726
S/G/Y/R/B/O	NT_006899	AC025761	119042083	3	chr5	NT_006899	AC109482	119067321	2	63265	0	2176	65441
S/G/Y/R/B/O	NT_006899	AC021415	119061193	1	chr5	NT_006899	AC109482	119067321	2	98865	0	987	99852
S/G/Y/R/B/O	NT_006899	AC021415	119061193	1	chr5	NT_006899	AC093527	118851048	3	25013	2603	6182	33798
S/G/Y/R/B/O	NT_006899	AC109482	119067321	2	chr5	NT_006899	AC010230	119137678	3	27451	0	0	27451
S/G/Y/R/B/O	NT_006899	AC109482	119067321	2	chr5	NT_006899	AC025761	119042083	3	63265	0	2176	65441
S/G/Y/R/B/O	NT_006899	AC109482	119067321	2	chr5	NT_006899	AC093527	118851048	3	27424	0	2177	29601
S/G/Y/R/B/O	NT_006899	AC109482	119067321	2			AC009589	119067321	1	11718	1897	737	14352
S/G/Y/R/B/O	NT_006899	AC109482	119067321	2			AC106761	118851048	1	12026	0	34853	46879
S/G/Y/R/B/O	NT_006899	AC010230	119137678	3	chr5	NT_006899	AC068660	119256682	3	22410	0	0	22410
S/G/Y/R/B/O	NT_006899	AC010230	119137678	3			AC009589	118851048	1	112486	0	0	112486
S/G/Y/R/B/O	NT_006899	AC010230	119137678	3			AC106761	119256682	1	43675	7287	42510	93472
S/G/Y/R/B/O	NT_006899	AC068660	119256682	3	chr5	NT_006899	AC008621	119406458	3	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC068660	119256682	3	chr5	NT_006899	AC008492	119429757	3	70277	0	0	70277
S/G/Y/R/B/O	NT_006899	AC068660	119256682	3	chr5	NT_006899	AC022321	119563911	1	78660	4422	17557	100639
S/G/Y/R/B/O	NT_006899	AC068660	119256682	3			AC008486	119067321	3	123230	0	0	123230
S/G/Y/R/B/O	NT_006899	AC068660	119256682	3			AC009589	119429757	1	24877	0	26351	51228
S/G/Y/R/B/O	NT_006899	AC008621	119406458	3	chr5	NT_006899	AC008492	119429757	3	67013	0	0	67013
S/G/Y/R/B/O	NT_006899	AC008621	119406458	3	chr5	NT_006899	AC022321	119563911	1	51316	0	4374	55690
S/G/Y/R/B/O	NT_006899	AC008492	119429757	3	chr5	NT_006899	AC099484	119474313	2	32613	0	0	32613
S/G/Y/R/B/O	NT_006899	AC008492	119429757	3	chr5	NT_006899	AC022321	119563911	1	76819	4423	11817	93059
S/G/Y/R/B/O	NT_006899	AC008492	119429757	3	chr5	NT_006899	AC068660	119256682	3	70277	0	0	70277
S/G/Y/R/B/O	NT_006899	AC008492	119429757	3			AC008486	119563911	3	71171	0	0	71171
S/G/Y/R/B/O	NT_006899	AC099484	119474313	2	chr5	NT_006899	AC022321	119563911	1	16138	5428	5547	27113
S/G/Y/R/B/O	NT_006899	AC099484	119474313	2	chr5	NT_006899	AC019030	119598797	1	60951	0	0	60951
S/G/Y/R/B/O	NT_006899	AC022321	119563911	1	chr5	NT_006899	AC019030	119598797	1	0	0	0	0
S/G/Y/R/B/O	NT_006899	AC022321	119563911	1	chr5	NT_006899	AC008492	119429757	3	76819	4423	11817	93059
S/G/Y/R/B/O	NT_006899	AC022321	119563911	1	chr5	NT_006899	AC008621	119406458	3	51316	0	4374	55690
S/G/Y/R/B/O	NT_006899	AC022321	119563911	1	chr5	NT_006899	AC068660	119256682	3	78660	4422	17557	100639
S/G/Y/R/B/O	NT_006899	AC022321	119563911	1			AC008486	119733397	3	84858	2609	17577	105044
S/G/Y/R/B/O	NT_006899	AC019030	119598797	1
S/G/Y/R/B/O	NT_006899	AC019030	119598797	1	chr5	NT_006780	AC094104	119733397	3	67822	2418	0	70240
S/G/Y/R/B/O	NT_006899	AC019030	119598797	1	chr5	NT_006899	AC099484	119474313	2	60951	0	0	60951