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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033116 | AC113407 | 98660121 | 1 | chr5 | NT_033116 | AC021965 | 98663535 | 1 | 116598 | 0 | 20530 | 137128 |
| S/G/Y/R/B/O |
NT_033116 | AC113407 | 98660121 | 1 | chr5 | NT_033116 | AC019138 | 98854599 | 1 | 48849 | 3736 | 6490 | 59075 |
| S/G/Y/R/B/O |
NT_033116 | AC113407 | 98660121 | 1 | chr5 | NT_033116 | AC092284 | 98847083 | 3 | 99456 | 0 | 0 | 99456 |
| S/G/Y/R/B/O |
NT_033116 | AC113407 | 98660121 | 1 | chr5 | NT_023115 | AC092370 | 22671427 | 1 | 19388 | 0 | 0 | 19388 |
| S/G/Y/R/B/O |
NT_033116 | AC113407 | 98660121 | 1 |   |   | AC092359 | 98847083 | 2 | 77576 | 0 | 1240 | 78816 |
| S/G/Y/R/B/O |
NT_033116 | AC021965 | 98663535 | 1 | chr5 | NT_033116 | AC092284 | 98847083 | 3 | 72903 | 0 | 1130 | 74033 |
| S/G/Y/R/B/O |
NT_033116 | AC021965 | 98663535 | 1 | chr5 | NT_033116 | AC019138 | 98854599 | 1 | 34422 | 3736 | 6491 | 44649 |
| S/G/Y/R/B/O |
NT_033116 | AC021965 | 98663535 | 1 | chr5 | NT_023115 | AC092370 | 22671427 | 1 | 11881 | 0 | 0 | 11881 |
| S/G/Y/R/B/O |
NT_033116 | AC021965 | 98663535 | 1 |   |   | AC092359 | 98847083 | 2 | 42316 | 0 | 1130 | 43446 |
| S/G/Y/R/B/O |
NT_033116 | AC092284 | 98847083 | 3 | chr5 | NT_033116 | AC019138 | 98854599 | 1 | 48860 | 4472 | 3793 | 57125 |
| S/G/Y/R/B/O |
NT_033116 | AC092284 | 98847083 | 3 | chr5 | NT_023115 | AC092370 | 22671427 | 1 | 15629 | 0 | 0 | 15629 |
| S/G/Y/R/B/O |
NT_033116 | AC092284 | 98847083 | 3 | chr5 | NT_033116 | AC113407 | 98660121 | 1 | 99456 | 0 | 0 | 99456 |
| S/G/Y/R/B/O |
NT_033116 | AC092284 | 98847083 | 3 |   |   | AC092359 | 99596422 | 2 | 105671 | 0 | 1243 | 106914 |
| S/G/Y/R/B/O |
NT_033116 | AC019138 | 98854599 | 1 | chr5 | NT_033116 | AC012642 | 98873844 | 3 | 31647 | 1894 | 0 | 33541 |
| S/G/Y/R/B/O |
NT_033116 | AC019138 | 98854599 | 1 | chr5 | NT_033116 | AC021965 | 98663535 | 1 | 34422 | 3736 | 6491 | 44649 |
| S/G/Y/R/B/O |
NT_033116 | AC019138 | 98854599 | 1 | chr5 | NT_023115 | AC092370 | 22671427 | 1 | 11823 | 0 | 0 | 11823 |
| S/G/Y/R/B/O |
NT_033116 | AC019138 | 98854599 | 1 | chr5 | NT_033116 | AC113407 | 98660121 | 1 | 48849 | 3736 | 6490 | 59075 |
| S/G/Y/R/B/O |
NT_033116 | AC019138 | 98854599 | 1 |   |   | AC092359 | 98847083 | 2 | 39769 | 4472 | 6918 | 51159 |
| S/G/Y/R/B/O |
NT_033116 | AC012642 | 98873844 | 3 | chr5 | NT_033116 | AC008837 | 99033800 | 3 | 31597 | 0 | 0 | 31597 |
| S/G/Y/R/B/O |
NT_033116 | AC012642 | 98873844 | 3 |   |   | AC021840 | 98854599 | 1 | 87398 | 0 | 0 | 87398 |
| S/G/Y/R/B/O |
NT_033116 | AC012642 | 98873844 | 3 |   |   | AC091956 | 99596422 | 1 | 70083 | 0 | 0 | 70083 |
| S/G/Y/R/B/O |
NT_033116 | AC012642 | 98873844 | 3 |   |   | AC092333 | 99596422 | 3 | 110612 | 0 | 0 | 110612 |
| S/G/Y/R/B/O |
NT_033116 | AC012642 | 98873844 | 3 |   |   | AC092358 | 99596422 | 1 | 47896 | 0 | 21357 | 69253 |
| S/G/Y/R/B/O |
NT_033116 | AC012642 | 98873844 | 3 |   |   | AC114306 | 99596422 | 1 | 23129 | 0 | 22742 | 45871 |
| S/G/Y/R/B/O |
NT_033116 | AC008837 | 99033800 | 3 | chr5 | NT_033116 | AP000768 | 99110921 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033116 | AC008837 | 99033800 | 3 | chr5 | NT_033116 | AC068735 | 99276395 | 1 | 17666 | 0 | 225 | 17891 |
| S/G/Y/R/B/O |
NT_033116 | AC008837 | 99033800 | 3 | chr5 | NT_033116 | AC113384 | 99146696 | 1 | 68890 | 1519 | 22886 | 93295 |
| S/G/Y/R/B/O |
NT_033116 | AC008837 | 99033800 | 3 | chr5 | NT_033116 | AP002891 | 99214082 | 1 | 20423 | 0 | 0 | 20423 |
| S/G/Y/R/B/O |
NT_033116 | AC008837 | 99033800 | 3 |   |   | AC021840 | 98873844 | 1 | 69794 | 0 | 0 | 69794 |
| S/G/Y/R/B/O |
NT_033116 | AC008837 | 99033800 | 3 |   |   | AC091956 | 99276395 | 1 | 52731 | 1630 | 7269 | 61630 |
| S/G/Y/R/B/O |
NT_033116 | AC008837 | 99033800 | 3 |   |   | AC092333 | 99276395 | 3 | 78359 | 0 | 0 | 78359 |
| S/G/Y/R/B/O |
NT_033116 | AC008837 | 99033800 | 3 |   |   | AC092358 | 99276395 | 1 | 11114 | 0 | 44814 | 55928 |
| S/G/Y/R/B/O |
NT_033116 | AC008837 | 99033800 | 3 |   |   | AC114306 | 99146696 | 1 | 81508 | 0 | 0 | 81508 |
| S/G/Y/R/B/O |
NT_033116 | AP000768 | 99110921 | 1 | chr5 | NT_033116 | AC113384 | 99146696 | 1 | 23243 | 4302 | 28702 | 56247 |
| S/G/Y/R/B/O |
NT_033116 | AP000768 | 99110921 | 1 | chr5 | NT_033116 | AC068735 | 99276395 | 1 | 43889 | 1387 | 1458 | 46734 |
| S/G/Y/R/B/O |
NT_033116 | AP000768 | 99110921 | 1 | chr5 | NT_006654 | AC114324 | 108406231 | 1 | 16785 | 4298 | 4346 | 25429 |
| S/G/Y/R/B/O |
NT_033116 | AP000768 | 99110921 | 1 | chr5 | NT_033116 | AP002891 | 99214082 | 1 | 17623 | 6645 | 5355 | 29623 |
| S/G/Y/R/B/O |
NT_033116 | AP000768 | 99110921 | 1 |   |   | AC114306 | 98660121 | 1 | 17719 | 0 | 18725 | 36444 |
| S/G/Y/R/B/O |
NT_033116 | AC113384 | 99146696 | 1 | chr5 | NT_033116 | AP002891 | 99214082 | 1 | 21933 | 10559 | 23850 | 56342 |
| S/G/Y/R/B/O |
NT_033116 | AC113384 | 99146696 | 1 | chr5 | NT_033116 | AC008837 | 99033800 | 3 | 68890 | 1519 | 22886 | 93295 |
| S/G/Y/R/B/O |
NT_033116 | AC113384 | 99146696 | 1 | chr5 | NT_033116 | AC068735 | 99276395 | 1 | 30396 | 3893 | 20373 | 54662 |
| S/G/Y/R/B/O |
NT_033116 | AC113384 | 99146696 | 1 | chr5 | NT_033116 | AC069569 | 99216447 | 1 | 23675 | 0 | 0 | 23675 |
| S/G/Y/R/B/O |
NT_033116 | AC113384 | 99146696 | 1 | chr5 | NT_006654 | AC114324 | 108406231 | 1 | 26158 | 0 | 40182 | 66340 |
| S/G/Y/R/B/O |
NT_033116 | AC113384 | 99146696 | 1 |   |   | AC021840 | 99033800 | 1 | 20572 | 1519 | 20222 | 42313 |
| S/G/Y/R/B/O |
NT_033116 | AC113384 | 99146696 | 1 |   |   | AC091956 | 99216447 | 1 | 20571 | 1519 | 21486 | 43576 |
| S/G/Y/R/B/O |
NT_033116 | AC113384 | 99146696 | 1 |   |   | AC092333 | 108298483 | 3 | 37075 | 1519 | 21500 | 60094 |
| S/G/Y/R/B/O |
NT_033116 | AC113384 | 99146696 | 1 |   |   | AC092358 | 108298483 | 1 | 35143 | 0 | 0 | 35143 |
| S/G/Y/R/B/O |
NT_033116 | AC113384 | 99146696 | 1 |   |   | AC114306 | 98660121 | 1 | 35985 | 0 | 24597 | 60582 |
| S/G/Y/R/B/O |
NT_033116 | AP002891 | 99214082 | 1 | chr5 | NT_033116 | AC069569 | 99216447 | 1 | 55491 | 18677 | 16988 | 91156 |
| S/G/Y/R/B/O |
NT_033116 | AP002891 | 99214082 | 1 | chr5 | NT_033116 | AC008837 | 99033800 | 3 | 20423 | 0 | 0 | 20423 |
| S/G/Y/R/B/O |
NT_033116 | AP002891 | 99214082 | 1 | chr5 | NT_006654 | AC022104 | 108635794 | 3 | 13231 | 0 | 12764 | 25995 |
| S/G/Y/R/B/O |
NT_033116 | AP002891 | 99214082 | 1 | chr5 | NT_033116 | AC068735 | 99276395 | 1 | 28619 | 8758 | 14325 | 51702 |
| S/G/Y/R/B/O |
NT_033116 | AP002891 | 99214082 | 1 | chr5 | NT_033116 | AC092363 | 99330037 | 3 | 12490 | 7281 | 4659 | 24430 |
| S/G/Y/R/B/O |
NT_033116 | AP002891 | 99214082 | 1 | chr5 | NT_006654 | AC113385 | 108112906 | 3 | 13142 | 2467 | 15303 | 30912 |
| S/G/Y/R/B/O |
NT_033116 | AP002891 | 99214082 | 1 | chr5 | NT_006654 | AC114324 | 108406231 | 1 | 63637 | 15686 | 21469 | 100792 |
| S/G/Y/R/B/O |
NT_033116 | AP002891 | 99214082 | 1 | chr5 | NT_033116 | AP000768 | 99110921 | 1 | 17623 | 6645 | 5355 | 29623 |
| S/G/Y/R/B/O |
NT_033116 | AP002891 | 99214082 | 1 |   |   | AC114306 | 98660121 | 1 | 10418 | 0 | 0 | 10418 |
| S/G/Y/R/B/O |
NT_033116 | AC069569 | 99216447 | 1 | chr5 | NT_033116 | AC068735 | 99276395 | 1 | 33858 | 2482 | 2322 | 38662 |
| S/G/Y/R/B/O |
NT_033116 | AC069569 | 99216447 | 1 | chr5 | NT_033116 | AC092363 | 99330037 | 3 | 56713 | 0 | 1480 | 58193 |
| S/G/Y/R/B/O |
NT_033116 | AC069569 | 99216447 | 1 | chr5 | NT_033116 | AC113384 | 99146696 | 1 | 23675 | 0 | 0 | 23675 |
| S/G/Y/R/B/O |
NT_033116 | AC069569 | 99216447 | 1 | chr5 | NT_006654 | AC114324 | 108406231 | 1 | 70181 | 1550 | 0 | 71731 |
| S/G/Y/R/B/O |
NT_033116 | AC069569 | 99216447 | 1 |   |   | AC027222 | 99110921 | 1 | 15250 | 0 | 0 | 15250 |
| S/G/Y/R/B/O |
NT_033116 | AC069569 | 99216447 | 1 |   |   | AC113381 | 99330037 | 1 | 14387 | 0 | 2185 | 16572 |
| S/G/Y/R/B/O |
NT_033116 | AC068735 | 99276395 | 1 | chr5 | NT_033116 | AC092363 | 99330037 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033116 | AC068735 | 99276395 | 1 | chr5 | NT_033116 | AC008837 | 99033800 | 3 | 17666 | 0 | 225 | 17891 |
| S/G/Y/R/B/O |
NT_033116 | AC068735 | 99276395 | 1 | chr5 | NT_033116 | AC113384 | 99146696 | 1 | 30396 | 3893 | 20373 | 54662 |
| S/G/Y/R/B/O |
NT_033116 | AC068735 | 99276395 | 1 | chr5 | NT_006654 | AC114324 | 108406231 | 1 | 74225 | 9195 | 14603 | 98023 |
| S/G/Y/R/B/O |
NT_033116 | AC068735 | 99276395 | 1 | chr5 | NT_033116 | AP000768 | 99110921 | 1 | 43889 | 1387 | 1458 | 46734 |
| S/G/Y/R/B/O |
NT_033116 | AC068735 | 99276395 | 1 | chr5 | NT_033116 | AP002891 | 99214082 | 1 | 28619 | 8758 | 14325 | 51702 |
| S/G/Y/R/B/O |
NT_033116 | AC068735 | 99276395 | 1 |   |   | AC114306 | 108112906 | 1 | 17800 | 0 | 0 | 17800 |
| S/G/Y/R/B/O |
NT_033116 | AC092363 | 99330037 | 3 | chr5 | NT_033116 | AC026442 | 99423950 | 3 | 6115 | 0 | 0 | 6115 |
| S/G/Y/R/B/O |
NT_033116 | AC092363 | 99330037 | 3 | chr5 | NT_033116 | AC069569 | 99216447 | 1 | 56713 | 0 | 1480 | 58193 |
| S/G/Y/R/B/O |
NT_033116 | AC092363 | 99330037 | 3 | chr5 | NT_033116 | AP002891 | 99214082 | 1 | 12490 | 7281 | 4659 | 24430 |
| S/G/Y/R/B/O |
NT_033116 | AC026442 | 99423950 | 3 | chr5 | NT_033116 | AC016895 | 99558966 | 1 | 54036 | 7722 | 13917 | 75675 |
| S/G/Y/R/B/O |
NT_033116 | AC026442 | 99423950 | 3 |   |   | AC092362 | 99558966 | 1 | 28132 | 0 | 1065 | 29197 |
| S/G/Y/R/B/O |
NT_033116 | AC016895 | 99558966 | 1 | chr5 | NT_033116 | AC091936 | 99596422 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033116 | AC016895 | 99558966 | 1 |   |   | AC092362 | 99423950 | 1 | 75494 | 9628 | 3074 | 88196 |
| S/G/Y/R/B/O |
NT_033116 | AC091936 | 99596422 | 1 |   |   |   |   |   |   |   |   |   |
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