Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_023124

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_023124	AC114323	30169009	1	chr5	NT_023124	AC016808	30184673	1	73783	2150	16797	92730
S/G/Y/R/B/O	NT_023124	AC114323	30169009	1	chr5	NT_023124	AC027345	30238269	3	51043	0	7141	58184
S/G/Y/R/B/O	NT_023124	AC016808	30184673	1	chr5	NT_023124	AC027345	30238269	3	129110	0	0	129110
S/G/Y/R/B/O	NT_023124	AC027345	30238269	3	chr5	NT_023124	AC010340	30364141	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC027345	30238269	3	chr5	NT_023124	AC114323	30169009	1	51043	0	7141	58184
S/G/Y/R/B/O	NT_023124	AC010340	30364141	3	chr5	NT_023124	AC106784	30467294	2	63615	0	0	63615
S/G/Y/R/B/O	NT_023124	AC106784	30467294	2	chr5	NT_023124	AC112172	30538787	3	31169	0	0	31169
S/G/Y/R/B/O	NT_023124	AC112172	30538787	3	chr5	NT_023124	AC025771	30631353	3	35676	0	0	35676
S/G/Y/R/B/O	NT_023124	AC112172	30538787	3			AC087219	30631353	3	61872	0	0	61872
S/G/Y/R/B/O	NT_023124	AC025771	30631353	3	chr5	NT_023124	AC099486	30768522	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC025771	30631353	3			AC087219	30467294	3	22496	0	0	22496
S/G/Y/R/B/O	NT_023124	AC099486	30768522	3	chr5	NT_023124	AC108082	30880748	2	8879	0	0	8879
S/G/Y/R/B/O	NT_023124	AC099486	30768522	3			AC020725	30538787	1	67567	4317	23739	95623
S/G/Y/R/B/O	NT_023124	AC108082	30880748	2	chr5	NT_023124	AC010374	30974002	3	48312	0	0	48312
S/G/Y/R/B/O	NT_023124	AC108082	30880748	2			AC020725	30974002	1	76382	1848	14064	92294
S/G/Y/R/B/O	NT_023124	AC010374	30974002	3	chr5	NT_023124	AC018765	31091374	3	18949	0	0	18949
S/G/Y/R/B/O	NT_023124	AC018765	31091374	3	chr5	NT_023124	AC091856	31205341	3	0	888	0	888
S/G/Y/R/B/O	NT_023124	AC018765	31091374	3			AC010418	30974002	3	88018	0	0	88018
S/G/Y/R/B/O	NT_023124	AC091856	31205341	3	chr5	NT_023124	AC114300	31379673	1	29009	0	0	29009
S/G/Y/R/B/O	NT_023124	AC114300	31379673	1	chr5	NT_023124	AC106735	31494791	2	33672	2585	0	36257
S/G/Y/R/B/O	NT_023124	AC106735	31494791	2	chr5	NT_023124	AC116309	31515033	3	90771	0	0	90771
S/G/Y/R/B/O	NT_023124	AC116309	31515033	3	chr5	NT_023124	AC025757	31691145	3	65496	0	0	65496
S/G/Y/R/B/O	NT_023124	AC025757	31691145	3	chr5	NT_023124	AC099517	31761275	3	39251	0	0	39251
S/G/Y/R/B/O	NT_023124	AC025757	31691145	3			AC011278	31379673	1	26210	0	0	26210
S/G/Y/R/B/O	NT_023124	AC025757	31691145	3			AC012287	31379673	1	13218	2124	0	15342
S/G/Y/R/B/O	NT_023124	AC025757	31691145	3			AC112194	31761275	1	20338	5155	31159	56652
S/G/Y/R/B/O	NT_023124	AC099517	31761275	3	chr5	NT_023124	AC113429	31872382	3	3385	0	0	3385
S/G/Y/R/B/O	NT_023124	AC099517	31761275	3			AC011278	31515033	1	133282	0	0	133282
S/G/Y/R/B/O	NT_023124	AC099517	31761275	3			AC012287	31515033	1	134054	2126	1231	137411
S/G/Y/R/B/O	NT_023124	AC099517	31761275	3			AC112194	31691145	1	54104	5320	74317	133741
S/G/Y/R/B/O	NT_023124	AC113429	31872382	3	chr5	NT_023124	AC026433	31879525	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC026433	31879525	3	chr5	NT_023124	AC091854	31975404	3	26047	0	0	26047
S/G/Y/R/B/O	NT_023124	AC026433	31879525	3			AC093215	31975404	1	42599	0	0	42599
S/G/Y/R/B/O	NT_023124	AC091854	31975404	3	chr5	NT_023124	AC026421	32058895	3	13670	0	0	13670
S/G/Y/R/B/O	NT_023124	AC091854	31975404	3			AC078928	31879525	1	45994	0	41920	87914
S/G/Y/R/B/O	NT_023124	AC091854	31975404	3			AC093215	31879525	1	73974	0	0	73974
S/G/Y/R/B/O	NT_023124	AC026421	32058895	3	chr5	NT_023124	AC091867	32215580	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC026421	32058895	3			AC078928	31879525	1	77695	0	0	77695
S/G/Y/R/B/O	NT_023124	AC091867	32215580	3	chr5	NT_023124	AC113386	32304767	3	32156	0	0	32156
S/G/Y/R/B/O	NT_023124	AC113386	32304767	3	chr5	NT_023124	AC091898	32382546	3	57297	0	0	57297
S/G/Y/R/B/O	NT_023124	AC091898	32382546	3	chr5	NT_023124	AC008768	32502880	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC091898	32382546	3			AC008159	6461766	1	53826	0	0	53826
S/G/Y/R/B/O	NT_023124	AC091898	32382546	3			AC026712	6461766	3	41582	0	0	41582
S/G/Y/R/B/O	NT_023124	AC091898	32382546	3			AC026728	6461766	2	37058	0	0	37058
S/G/Y/R/B/O	NT_023124	AC008768	32502880	3	chr5	NT_023124	AC106802	32615996	2	78251	0	0	78251
S/G/Y/R/B/O	NT_023124	AC008768	32502880	3			AC008159	32304767	1	123223	0	0	123223
S/G/Y/R/B/O	NT_023124	AC008768	32502880	3			AC026712	32304767	3	96357	0	0	96357
S/G/Y/R/B/O	NT_023124	AC008768	32502880	3			AC026728	32304767	2	47195	0	0	47195
S/G/Y/R/B/O	NT_023124	AC106802	32615996	2	chr5	NT_023124	AC022417	32645156	3	94734	0	0	94734
S/G/Y/R/B/O	NT_023124	AC106802	32615996	2			AC008159	32615996	1	61666	0	0	61666
S/G/Y/R/B/O	NT_023124	AC022417	32645156	3	chr5	NT_023124	AC022447	32769184	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC022417	32645156	3			AC010363	32645156	3	27622	0	0	27622
S/G/Y/R/B/O	NT_023124	AC022447	32769184	3	chr5	NT_023124	AC010469	32907025	3	25829	0	0	25829
S/G/Y/R/B/O	NT_023124	AC022447	32769184	3			AC010363	32615996	3	115733	0	0	115733
S/G/Y/R/B/O	NT_023124	AC010469	32907025	3	chr5	NT_023124	AC027330	33001976	1	11311	0	0	11311
S/G/Y/R/B/O	NT_023124	AC010469	32907025	3	chr5	NT_023124	AC025458	33004901	1	11431	0	0	11431
S/G/Y/R/B/O	NT_023124	AC010469	32907025	3			AC026718	33004901	2	61944	0	1308	63252
S/G/Y/R/B/O	NT_023124	AC027330	33001976	1	chr5	NT_023124	AC025458	33004901	1	102752	0	0	102752
S/G/Y/R/B/O	NT_023124	AC027330	33001976	1	chr5	NT_023124	AC010449	33090947	1	14859	0	0	14859
S/G/Y/R/B/O	NT_023124	AC027330	33001976	1			AC026718	33004901	2	14128	2407	11364	27899
S/G/Y/R/B/O	NT_023124	AC025458	33004901	1	chr5	NT_023124	AC010449	33090947	1	19391	0	0	19391
S/G/Y/R/B/O	NT_023124	AC025458	33004901	1	chr5	NT_023124	AC010469	32907025	3	11431	0	0	11431
S/G/Y/R/B/O	NT_023124	AC025458	33004901	1			AC026718	32907025	2	19499	2407	25497	47403
S/G/Y/R/B/O	NT_023124	AC010449	33090947	1	chr5	NT_023124	AC114299	33146224	1	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC010449	33090947	1	chr5	NT_023124	AC022444	33849932	2	13688	0	0	13688
S/G/Y/R/B/O	NT_023124	AC010449	33090947	1	chr5	NT_023124	AC025178	33841988	2	44831	0	0	44831
S/G/Y/R/B/O	NT_023124	AC010449	33090947	1	chr5	NT_023124	AC027330	33001976	1	14859	0	0	14859
S/G/Y/R/B/O	NT_023124	AC114299	33146224	1	chr5	NT_023124	AC022443	33207458	3	96052	0	0	96052
S/G/Y/R/B/O	NT_023124	AC114299	33146224	1	chr5	NT_023124	AC010343	33227024	3	76471	0	0	76471
S/G/Y/R/B/O	NT_023124	AC022443	33207458	3	chr5	NT_023124	AC010343	33227024	3	107237	0	0	107237
S/G/Y/R/B/O	NT_023124	AC010343	33227024	3	chr5	NT_023124	AC034223	33353771	3	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC010343	33227024	3	chr5	NT_023124	AC114299	33146224	1	76471	0	0	76471
S/G/Y/R/B/O	NT_023124	AC034223	33353771	3	chr5	NT_023124	AC025459	33420719	3	35957	0	0	35957
S/G/Y/R/B/O	NT_023124	AC025459	33420719	3	chr5	NT_023124	AC026703	33534058	3	9073	0	0	9073
S/G/Y/R/B/O	NT_023124	AC025459	33420719	3			AC026751	33534058	2	33463	0	0	33463
S/G/Y/R/B/O	NT_023124	AC026703	33534058	3	chr5	NT_023124	AC008766	33640168	3	26039	0	0	26039
S/G/Y/R/B/O	NT_023124	AC026703	33534058	3			AC026751	33420719	2	131539	0	0	131539
S/G/Y/R/B/O	NT_023124	AC008766	33640168	3	chr5	NT_023124	AC021128	33787698	1	61572	4376	63712	129660
S/G/Y/R/B/O	NT_023124	AC008766	33640168	3			AC026751	33534058	2	42432	0	0	42432
S/G/Y/R/B/O	NT_023124	AC021128	33787698	1	chr5	NT_023124	AC025178	33841988	2	0	0	0	0
S/G/Y/R/B/O	NT_023124	AC021128	33787698	1	chr5	NT_023124	AC017039	34333459	1	28648	4261	3281	36190
S/G/Y/R/B/O	NT_023124	AC021128	33787698	1	chr5	NT_023124	AC074134	34323685	1	13507	0	4226	17733
S/G/Y/R/B/O	NT_023124	AC021128	33787698	1			AC026751	33534058	2	25937	1699	0	27636
S/G/Y/R/B/O	NT_023124	AC025178	33841988	2	chr5	NT_023124	AC022444	33849932	2	135405	0	0	135405
S/G/Y/R/B/O	NT_023124	AC025178	33841988	2	chr5	NT_023124	AC010449	33090947	1	44831	0	0	44831
S/G/Y/R/B/O	NT_023124	AC025178	33841988	2			AC008803	34323685	1	46131	0	20225	66356
S/G/Y/R/B/O	NT_023124	AC025178	33841988	2			AC022423	33090947	2	88326	0	0	88326
S/G/Y/R/B/O	NT_023124	AC022444	33849932	2	chr5	NT_023124	AC025181	33986199	2	36370	2697	0	39067
S/G/Y/R/B/O	NT_023124	AC022444	33849932	2	chr5	NT_023124	AC010449	33090947	1	13688	0	0	13688
S/G/Y/R/B/O	NT_023124	AC022444	33849932	2			AC008803	33986199	1	39856	0	1457	41313
S/G/Y/R/B/O	NT_023124	AC022444	33849932	2			AC022423	33090947	2	100693	0	0	100693
S/G/Y/R/B/O	NT_023124	AC025181	33986199	2	chr5	NT_023124	AC091961	34030092	3	15345	0	0	15345
S/G/Y/R/B/O	NT_023124	AC091961	34030092	3	chr5	NT_023124	AC008949	34098883	3	16126	0	0	16126
S/G/Y/R/B/O	NT_023124	AC008949	34098883	3	chr5	NT_023124	AC034240	34246465	3	43954	0	0	43954
S/G/Y/R/B/O	NT_023124	AC034240	34246465	3	chr5	NT_023124	AC074134	34323685	1	35940	0	19795	55735
S/G/Y/R/B/O	NT_023124	AC034240	34246465	3	chr5	NT_023124	AC017039	34333459	1	50800	2819	6895	60514
S/G/Y/R/B/O	NT_023124	AC074134	34323685	1	chr5	NT_023124	AC017039	34333459	1	36828	2649	4252	43729
S/G/Y/R/B/O	NT_023124	AC074134	34323685	1	chr5	NT_023124	AC021128	33787698	1	13507	0	4226	17733
S/G/Y/R/B/O	NT_023124	AC017039	34333459	1
S/G/Y/R/B/O	NT_023124	AC017039	34333459	1	chr5	NT_023124	AC021128	33787698	1	28648	4261	3281	36190
S/G/Y/R/B/O	NT_023124	AC017039	34333459	1	chr5	NT_023124	AC034240	34246465	3	50800	2819	6895	60514