Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_029973

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_029973	AC010410	89623290	3	chr5	NT_029973	AC035142	89641175	3	2898	0	0	2898
S/G/Y/R/B/O	NT_029973	AC035142	89641175	3	chr5	NT_029973	AC018754	89722958	3	32055	0	0	32055
S/G/Y/R/B/O	NT_029973	AC018754	89722958	3	chr5	NT_029973	AC015452	89862955	1	51610	0	0	51610
S/G/Y/R/B/O	NT_029973	AC018754	89722958	3	chr5	NT_029973	AC025245	89887055	1	89429	0	0	89429
S/G/Y/R/B/O	NT_029973	AC018754	89722958	3			AF477979	89641175	3	20438	0	0	20438
S/G/Y/R/B/O	NT_029973	AC015452	89862955	1	chr5	NT_029973	AC025245	89887055	1	63489	0	0	63489
S/G/Y/R/B/O	NT_029973	AC015452	89862955	1	chr5	NT_029973	AC091877	89942866	1	55792	5757	14073	75622
S/G/Y/R/B/O	NT_029973	AC025245	89887055	1	chr5	NT_029973	AC091877	89942866	1	22523	1210	0	23733
S/G/Y/R/B/O	NT_029973	AC025245	89887055	1	chr5	NT_029973	AC018754	89722958	3	89429	0	0	89429
S/G/Y/R/B/O	NT_029973	AC091877	89942866	1	chr5	NT_029973	AC008939	89987672	2	24128	0	0	24128
S/G/Y/R/B/O	NT_029973	AC091877	89942866	1	chr5	NT_029973	AC015452	89862955	1	55792	5757	14073	75622
S/G/Y/R/B/O	NT_029973	AC008939	89987672	2	chr5	NT_029973	AC074216	90012485	1	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC008939	89987672	2	chr5	NT_029973	AC020930	90072102	3	27537	0	0	27537
S/G/Y/R/B/O	NT_029973	AC008939	89987672	2	chr5	NT_029973	AC021141	90021650	1	55155	6818	12509	74482
S/G/Y/R/B/O	NT_029973	AC074216	90012485	1	chr5	NT_029973	AC021141	90021650	1	25456	0	0	25456
S/G/Y/R/B/O	NT_029973	AC074216	90012485	1	chr5	NT_029973	AC008839	90179262	3	48246	0	41189	89435
S/G/Y/R/B/O	NT_029973	AC074216	90012485	1	chr5	NT_029973	AC020930	90072102	3	33276	0	0	33276
S/G/Y/R/B/O	NT_029973	AC074216	90012485	1	chr5	NT_029973	AC093241	90284895	2	28212	4570	37199	69981
S/G/Y/R/B/O	NT_029973	AC074216	90012485	1	chr5	NT_029973	AC116335	90236355	3	35313	0	49769	85082
S/G/Y/R/B/O	NT_029973	AC021141	90021650	1	chr5	NT_029973	AC020930	90072102	3	62107	0	17202	79309
S/G/Y/R/B/O	NT_029973	AC021141	90021650	1	chr5	NT_029973	AC008839	90179262	3	67778	1909	33675	103362
S/G/Y/R/B/O	NT_029973	AC021141	90021650	1	chr5	NT_029973	AC008939	89987672	2	55155	6818	12509	74482
S/G/Y/R/B/O	NT_029973	AC021141	90021650	1	chr5	NT_029973	AC116335	90236355	3	12658	1909	34886	49453
S/G/Y/R/B/O	NT_029973	AC020930	90072102	3	chr5	NT_029973	AC008839	90179262	3	47317	0	0	47317
S/G/Y/R/B/O	NT_029973	AC020930	90072102	3	chr5	NT_029973	AC008939	89987672	2	27537	0	0	27537
S/G/Y/R/B/O	NT_029973	AC020930	90072102	3	chr5	NT_029973	AC074216	90012485	1	33276	0	0	33276
S/G/Y/R/B/O	NT_029973	AC008839	90179262	3	chr5	NT_029973	AC116335	90236355	3	39825	0	0	39825
S/G/Y/R/B/O	NT_029973	AC008839	90179262	3	chr5	NT_029973	AC021141	90021650	1	67778	1909	33675	103362
S/G/Y/R/B/O	NT_029973	AC008839	90179262	3	chr5	NT_029973	AC074216	90012485	1	48246	0	41189	89435
S/G/Y/R/B/O	NT_029973	AC116335	90236355	3	chr5	NT_029973	AC093241	90284895	2	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC116335	90236355	3	chr5	NT_029973	AC021141	90021650	1	12658	1909	34886	49453
S/G/Y/R/B/O	NT_029973	AC116335	90236355	3	chr5	NT_029973	AC074216	90012485	1	35313	0	49769	85082
S/G/Y/R/B/O	NT_029973	AC093241	90284895	2	chr5	NT_029973	AC114971	90314789	3	114779	0	0	114779
S/G/Y/R/B/O	NT_029973	AC093241	90284895	2	chr5	NT_029973	AC074216	90012485	1	28212	4570	37199	69981
S/G/Y/R/B/O	NT_029973	AC093241	90284895	2			AC010780	90012485	1	78754	8368	1729	88851
S/G/Y/R/B/O	NT_029973	AC114971	90314789	3	chr5	NT_029973	AC013656	90434139	1	15996	2679	5789	24464
S/G/Y/R/B/O	NT_029973	AC114971	90314789	3	chr5	NT_029973	AC010243	90447013	2	21299	0	0	21299
S/G/Y/R/B/O	NT_029973	AC114971	90314789	3			AC010780	90447013	1	122995	11177	1729	135901
S/G/Y/R/B/O	NT_029973	AC013656	90434139	1	chr5	NT_029973	AC010243	90447013	2	64783	9820	24986	99589
S/G/Y/R/B/O	NT_029973	AC013656	90434139	1	chr5	NT_029973	AC010897	90535439	1	29445	0	4743	34188
S/G/Y/R/B/O	NT_029973	AC013656	90434139	1	chr5	NT_029973	AC016555	90540127	3	33312	0	4743	38055
S/G/Y/R/B/O	NT_029973	AC010243	90447013	2	chr5	NT_029973	AC010897	90535439	1	66909	0	3890	70799
S/G/Y/R/B/O	NT_029973	AC010243	90447013	2	chr5	NT_029973	AC016555	90540127	3	66939	3637	3895	74471
S/G/Y/R/B/O	NT_029973	AC010243	90447013	2	chr5	NT_029973	AC114971	90314789	3	21299	0	0	21299
S/G/Y/R/B/O	NT_029973	AC010243	90447013	2			AC010780	90314789	1	14318	0	0	14318
S/G/Y/R/B/O	NT_029973	AC010897	90535439	1	chr5	NT_029973	AC016555	90540127	3	48056	3312	96317	147685
S/G/Y/R/B/O	NT_029973	AC010897	90535439	1	chr5	NT_029973	AC013656	90434139	1	29445	0	4743	34188
S/G/Y/R/B/O	NT_029973	AC010897	90535439	1	chr12	NT_026404	AC087315	23759775	3	64450	1733	13677	79860
S/G/Y/R/B/O	NT_029973	AC010897	90535439	1	chr5	NT_029973	AC091826	90729691	1	15116	0	0	15116
S/G/Y/R/B/O	NT_029973	AC010897	90535439	1	chr5	NT_029973	AC114978	90694975	3	25350	1733	0	27083
S/G/Y/R/B/O	NT_029973	AC010897	90535439	1			AC013617	90447013	1	37976	1733	11604	51313
S/G/Y/R/B/O	NT_029973	AC016555	90540127	3	chr5	NT_029973	AC114978	90694975	3	6173	0	0	6173
S/G/Y/R/B/O	NT_029973	AC016555	90540127	3	chr5	NT_029973	AC010243	90447013	2	66939	3637	3895	74471
S/G/Y/R/B/O	NT_029973	AC016555	90540127	3	chr5	NT_029973	AC013656	90434139	1	33312	0	4743	38055
S/G/Y/R/B/O	NT_029973	AC016555	90540127	3	chr12	NT_026404	AC087315	23759775	3	53456	0	0	53456
S/G/Y/R/B/O	NT_029973	AC016555	90540127	3			AC013617	90535439	1	65212	0	0	65212
S/G/Y/R/B/O	NT_029973	AC114978	90694975	3	chr5	NT_029973	AC091826	90729691	1	16526	0	0	16526
S/G/Y/R/B/O	NT_029973	AC114978	90694975	3	chr5	NT_029973	AC010897	90535439	1	25350	1733	0	27083
S/G/Y/R/B/O	NT_029973	AC114978	90694975	3	chr12	NT_026404	AC087315	23759775	3	40890	0	0	40890
S/G/Y/R/B/O	NT_029973	AC091826	90729691	1	chr5	NT_029973	AC008487	90785830	1	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC091826	90729691	1	chr5	NT_029973	AC008526	90897421	3	25075	0	0	25075
S/G/Y/R/B/O	NT_029973	AC091826	90729691	1	chr5	NT_029973	AC010897	90535439	1	15116	0	0	15116
S/G/Y/R/B/O	NT_029973	AC091826	90729691	1	chr12	NT_026404	AC087315	23759775	3	22308	0	62680	84988
S/G/Y/R/B/O	NT_029973	AC091826	90729691	1			AC013617	90535439	1	35794	2609	0	38403
S/G/Y/R/B/O	NT_029973	AC008487	90785830	1	chr5	NT_029973	AC094090	90876565	1	9347	2759	29897	42003
S/G/Y/R/B/O	NT_029973	AC008487	90785830	1	chr5	NT_029973	AC008525	91152996	3	21620	2758	27781	52159
S/G/Y/R/B/O	NT_029973	AC008487	90785830	1	chr5	NT_029295	AC008568	125795119	3	43074	10793	19623	73490
S/G/Y/R/B/O	NT_029973	AC008487	90785830	1	chr5	NT_029295	AC010482	125932267	3	15895	4943	10476	31314
S/G/Y/R/B/O	NT_029973	AC008487	90785830	1	chr5	NT_029973	AC026701	91069133	3	21637	2766	54839	79242
S/G/Y/R/B/O	NT_029973	AC008487	90785830	1			AC008876	125795119	3	37785	5128	22638	65551
S/G/Y/R/B/O	NT_029973	AC008487	90785830	1			AC044843	91069133	1	12279	0	0	12279
S/G/Y/R/B/O	NT_029973	AC094090	90876565	1	chr5	NT_029973	AC008526	90897421	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC094090	90876565	1	chr5	NT_029973	AC008525	91152996	3	62276	0	12435	74711
S/G/Y/R/B/O	NT_029973	AC094090	90876565	1	chr5	NT_029973	AC008835	91220841	3	17765	0	0	17765
S/G/Y/R/B/O	NT_029973	AC094090	90876565	1	chr5	NT_029973	AC026701	91069133	3	60586	0	0	60586
S/G/Y/R/B/O	NT_029973	AC094090	90876565	1			AC016547	91220841	2	34757	2934	0	37691
S/G/Y/R/B/O	NT_029973	AC094090	90876565	1			AC044843	91069133	1	49980	2673	1017	53670
S/G/Y/R/B/O	NT_029973	AC094090	90876565	1			AC116339	91069133	1	38919	2582	19210	60711
S/G/Y/R/B/O	NT_029973	AC008526	90897421	3	chr5	NT_029973	AC012604	91065664	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC008526	90897421	3	chr5	NT_029973	AC091826	90729691	1	25075	0	0	25075
S/G/Y/R/B/O	NT_029973	AC012604	91065664	3	chr5	NT_029973	AC026701	91069133	3	3475	0	0	3475
S/G/Y/R/B/O	NT_029973	AC026701	91069133	3	chr5	NT_029973	AC008525	91152996	3	55330	0	0	55330
S/G/Y/R/B/O	NT_029973	AC026701	91069133	3	chr5	NT_029973	AC008487	90785830	1	21637	2766	54839	79242
S/G/Y/R/B/O	NT_029973	AC026701	91069133	3	chr5	NT_029973	AC094090	90876565	1	60586	0	0	60586
S/G/Y/R/B/O	NT_029973	AC008525	91152996	3	chr5	NT_029973	AC008835	91220841	3	0	0	0	0
S/G/Y/R/B/O	NT_029973	AC008525	91152996	3	chr5	NT_029973	AC008487	90785830	1	21620	2758	27781	52159
S/G/Y/R/B/O	NT_029973	AC008525	91152996	3	chr5	NT_029973	AC094090	90876565	1	62276	0	12435	74711
S/G/Y/R/B/O	NT_029973	AC008525	91152996	3			AC016547	90785830	2	42790	0	0	42790
S/G/Y/R/B/O	NT_029973	AC008525	91152996	3			AC044843	91069133	1	72850	0	1017	73867
S/G/Y/R/B/O	NT_029973	AC008525	91152996	3			AC116339	90876565	1	31118	2582	19210	52910
S/G/Y/R/B/O	NT_029973	AC008835	91220841	3	chr5	NT_029973	AC019295	91340195	1	84683	0	0	84683
S/G/Y/R/B/O	NT_029973	AC008835	91220841	3	chr5	NT_029973	AC094090	90876565	1	17765	0	0	17765
S/G/Y/R/B/O	NT_029973	AC008835	91220841	3			AC016547	90876565	2	69510	0	6443	75953
S/G/Y/R/B/O	NT_029973	AC008835	91220841	3			AC044843	91340195	1	56764	1681	0	58445
S/G/Y/R/B/O	NT_029973	AC008835	91220841	3			AC083781	91340195	1	95830	2700	662	99192
S/G/Y/R/B/O	NT_029973	AC008835	91220841	3			AC116339	90876565	1	68491	0	22629	91120
S/G/Y/R/B/O	NT_029973	AC019295	91340195	1	chr5	NT_029973	AC010259	91341868	3	35598	0	0	35598
S/G/Y/R/B/O	NT_029973	AC019295	91340195	1			AC009990	91220841	3	14999	0	0	14999
S/G/Y/R/B/O	NT_029973	AC019295	91340195	1			AC016547	91341868	2	36498	0	6443	42941
S/G/Y/R/B/O	NT_029973	AC019295	91340195	1			AC044843	91341868	1	22500	1682	0	24182
S/G/Y/R/B/O	NT_029973	AC019295	91340195	1			AC083781	91341868	1	81221	0	0	81221
S/G/Y/R/B/O	NT_029973	AC019295	91340195	1			AC116339	91341868	1	20594	0	27212	47806
S/G/Y/R/B/O	NT_029973	AC010259	91341868	3	chr5	NT_029973	AC010596	91537344	3	76548	0	0	76548
S/G/Y/R/B/O	NT_029973	AC010259	91341868	3			AC009990	64439065	3	159754	0	0	159754
S/G/Y/R/B/O	NT_029973	AC010259	91341868	3			AC083781	91340195	1	51990	0	0	51990
S/G/Y/R/B/O	NT_029973	AC010259	91341868	3			AC116339	91340195	1	27955	0	11003	38958
S/G/Y/R/B/O	NT_029973	AC010596	91537344	3