Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_028179

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_028179	AC010430	91681464	3	chr5	NT_028179	AC008931	91738606	3	0	0	0	0
S/G/Y/R/B/O	NT_028179	AC010430	91681464	3			AC008504	91341868	3	56427	0	0	56427
S/G/Y/R/B/O	NT_028179	AC008931	91738606	3	chr5	NT_028179	AC074131	91874583	1	24609	0	0	24609
S/G/Y/R/B/O	NT_028179	AC074131	91874583	1	chr5	NT_028179	AC108117	91976155	1	13857	4680	22150	40687
S/G/Y/R/B/O	NT_028179	AC108117	91976155	1	chr5	NT_028179	AC093254	91981592	1	24551	2775	7240	34566
S/G/Y/R/B/O	NT_028179	AC093254	91981592	1	chr5	NT_028179	AC017114	92037199	1	7215	1688	0	8903
S/G/Y/R/B/O	NT_028179	AC093254	91981592	1	chr5	NT_028179	AC112179	92042469	3	27972	1506	19079	48557
S/G/Y/R/B/O	NT_028179	AC017114	92037199	1	chr5	NT_028179	AC112179	92042469	3	116555	8616	0	125171
S/G/Y/R/B/O	NT_028179	AC017114	92037199	1	chr5	NT_028179	AC008448	92199448	3	59490	12983	3270	75743
S/G/Y/R/B/O	NT_028179	AC017114	92037199	1	chr5	NT_028179	AC113167	92303856	3	18947	4024	0	22971
S/G/Y/R/B/O	NT_028179	AC112179	92042469	3	chr5	NT_028179	AC008448	92199448	3	52374	0	0	52374
S/G/Y/R/B/O	NT_028179	AC112179	92042469	3	chr5	NT_028179	AC093254	91981592	1	27972	1506	19079	48557
S/G/Y/R/B/O	NT_028179	AC008448	92199448	3	chr5	NT_028179	AC113167	92303856	3	87361	0	0	87361
S/G/Y/R/B/O	NT_028179	AC008448	92199448	3	chr5	NT_028179	AC017114	92037199	1	59490	12983	3270	75743
S/G/Y/R/B/O	NT_028179	AC113167	92303856	3	chr5	NT_028179	AC010599	92356677	3	0	0	0	0
S/G/Y/R/B/O	NT_028179	AC113167	92303856	3	chr5	NT_028179	AC017114	92037199	1	18947	4024	0	22971
S/G/Y/R/B/O	NT_028179	AC113167	92303856	3			AC010961	92199448	2	119227	0	0	119227
S/G/Y/R/B/O	NT_028179	AC010599	92356677	3	chr5	NT_028179	AC008903	92454817	3	98106	0	0	98106
S/G/Y/R/B/O	NT_028179	AC010599	92356677	3			AC010961	92454817	2	31785	0	0	31785
S/G/Y/R/B/O	NT_028179	AC010599	92356677	3			AC026804	93745943	2	36885	0	0	36885
S/G/Y/R/B/O	NT_028179	AC010599	92356677	3			AC073432	93745943	1	29080	0	0	29080
S/G/Y/R/B/O	NT_028179	AC010599	92356677	3			AC093276	93745943	1	16939	0	0	16939
S/G/Y/R/B/O	NT_028179	AC008903	92454817	3	chr5	NT_028179	AC093530	92505364	3	0	0	0	0
S/G/Y/R/B/O	NT_028179	AC008903	92454817	3	chr5	NT_028179	AC016016	93745943	1	43646	13124	9780	66550
S/G/Y/R/B/O	NT_028179	AC008903	92454817	3			AC026804	93745943	2	76978	2333	1153	80464
S/G/Y/R/B/O	NT_028179	AC008903	92454817	3			AC073432	93745943	1	89761	0	0	89761
S/G/Y/R/B/O	NT_028179	AC008903	92454817	3			AC093276	93745943	1	42147	0	0	42147
S/G/Y/R/B/O	NT_028179	AC093530	92505364	3	chr5	NT_028179	AC099554	92614067	2	24881	0	0	24881
S/G/Y/R/B/O	NT_028179	AC093530	92505364	3	chr5	NT_028179	AC016016	93745943	1	42329	12112	7286	61727
S/G/Y/R/B/O	NT_028179	AC093530	92505364	3			AC011828	93745943	1	14226	0	0	14226
S/G/Y/R/B/O	NT_028179	AC093530	92505364	3			AC026804	93745943	2	21391	0	0	21391
S/G/Y/R/B/O	NT_028179	AC093530	92505364	3			AC055812	93745943	1	13228	1596	0	14824
S/G/Y/R/B/O	NT_028179	AC093530	92505364	3			AC093276	93745943	1	76856	0	4056	80912
S/G/Y/R/B/O	NT_028179	AC099554	92614067	2	chr5	NT_028179	AC099497	92618159	3	135720	0	0	135720
S/G/Y/R/B/O	NT_028179	AC099554	92614067	2			AC011828	92614067	1	77855	11580	17519	106954
S/G/Y/R/B/O	NT_028179	AC099554	92614067	2			AC025923	92614067	1	49503	4380	0	53883
S/G/Y/R/B/O	NT_028179	AC099554	92614067	2			AC055812	92614067	1	138778	1596	0	140374
S/G/Y/R/B/O	NT_028179	AC099497	92618159	3	chr5	NT_028179	AC093510	92784043	3	36902	0	0	36902
S/G/Y/R/B/O	NT_028179	AC099497	92618159	3			AC011828	92618159	1	87177	9105	20008	116290
S/G/Y/R/B/O	NT_028179	AC099497	92618159	3			AC025923	92618159	1	158082	4371	0	162453
S/G/Y/R/B/O	NT_028179	AC099497	92618159	3			AC055812	92618159	1	113845	0	0	113845
S/G/Y/R/B/O	NT_028179	AC093510	92784043	3	chr5	NT_028179	AC027323	92873069	3	0	0	0	0
S/G/Y/R/B/O	NT_028179	AC093510	92784043	3	chr5	NT_028179	AC010622	93718022	2	36584	2624	0	39208
S/G/Y/R/B/O	NT_028179	AC093510	92784043	3			AC025923	93718022	1	24397	0	0	24397
S/G/Y/R/B/O	NT_028179	AC093510	92784043	3			AC091943	6166673	1	41431	0	994	42425
S/G/Y/R/B/O	NT_028179	AC093510	92784043	3			AC093266	6166673	1	37499	0	10313	47812
S/G/Y/R/B/O	NT_028179	AC093510	92784043	3			AC104122	92618159	3	68099	0	0	68099
S/G/Y/R/B/O	NT_028179	AC027323	92873069	3	chr5	NT_028179	AC093529	93006005	3	15141	0	0	15141
S/G/Y/R/B/O	NT_028179	AC027323	92873069	3	chr5	NT_028179	AC010622	93718022	2	84246	7725	12438	104409
S/G/Y/R/B/O	NT_028179	AC027323	92873069	3	chr5	NT_028179	AC020999	93739736	1	65385	1751	0	67136
S/G/Y/R/B/O	NT_028179	AC027323	92873069	3			AC093266	162078059	1	43899	0	0	43899
S/G/Y/R/B/O	NT_028179	AC027323	92873069	3			AC104122	93006005	3	81155	0	0	81155
S/G/Y/R/B/O	NT_028179	AC093529	93006005	3	chr5	NT_028179	AC094109	93100158	3	65509	0	0	65509
S/G/Y/R/B/O	NT_028179	AC093529	93006005	3	chr5	NT_028179	AC020999	93739736	1	88869	2258	1841	92968
S/G/Y/R/B/O	NT_028179	AC093529	93006005	3			AC068323	92873069	3	65509	0	0	65509
S/G/Y/R/B/O	NT_028179	AC094109	93100158	3	chr5	NT_028179	AC099512	93194688	3	0	0	0	0
S/G/Y/R/B/O	NT_028179	AC094109	93100158	3	chr5	NT_028179	AC020999	93739736	1	54823	2258	1841	58922
S/G/Y/R/B/O	NT_028179	AC094109	93100158	3			AC018622	93100158	3	76709	0	0	76709
S/G/Y/R/B/O	NT_028179	AC094109	93100158	3			AC068323	93739736	3	160039	0	0	160039
S/G/Y/R/B/O	NT_028179	AC099512	93194688	3	chr5	NT_028179	AC034215	93320546	3	0	0	0	0
S/G/Y/R/B/O	NT_028179	AC099512	93194688	3			AC012545	93006005	1	100486	0	0	100486
S/G/Y/R/B/O	NT_028179	AC099512	93194688	3			AC018622	93006005	3	146671	0	0	146671
S/G/Y/R/B/O	NT_028179	AC099512	93194688	3			AC068323	93006005	3	35880	0	0	35880
S/G/Y/R/B/O	NT_028179	AC034215	93320546	3	chr5	NT_028179	AC074132	93446576	3	34546	0	0	34546
S/G/Y/R/B/O	NT_028179	AC074132	93446576	3	chr5	NT_028179	AC093281	93530121	3	44446	0	0	44446
S/G/Y/R/B/O	NT_028179	AC093281	93530121	3	chr5	NT_028179	AC044889	93653178	1	60380	2695	0	63075
S/G/Y/R/B/O	NT_028179	AC044889	93653178	1	chr5	NT_028179	AC010622	93718022	2	0	0	0	0
S/G/Y/R/B/O	NT_028179	AC044889	93653178	1	chr5	NT_033118	AC008799	93844752	3	30026	3408	0	33434
S/G/Y/R/B/O	NT_028179	AC010622	93718022	2	chr5	NT_028179	AC020999	93739736	1	34396	1264	0	35660
S/G/Y/R/B/O	NT_028179	AC010622	93718022	2	chr5	NT_028179	AC027323	92873069	3	84246	7725	12438	104409
S/G/Y/R/B/O	NT_028179	AC010622	93718022	2	chr5	NT_028179	AC093510	92784043	3	36584	2624	0	39208
S/G/Y/R/B/O	NT_028179	AC010622	93718022	2			AC091943	162078059	1	10997	0	1976	12973
S/G/Y/R/B/O	NT_028179	AC010622	93718022	2			AC093266	162078059	1	23988	5000	8755	37743
S/G/Y/R/B/O	NT_028179	AC010622	93718022	2			AC104122	93006005	3	60864	5000	7538	73402
S/G/Y/R/B/O	NT_028179	AC020999	93739736	1	chr5	NT_028179	AC016016	93745943	1	0	0	0	0
S/G/Y/R/B/O	NT_028179	AC020999	93739736	1	chr5	NT_028179	AC027323	92873069	3	65385	1751	0	67136
S/G/Y/R/B/O	NT_028179	AC020999	93739736	1	chr5	NT_028179	AC093529	93006005	3	88869	2258	1841	92968
S/G/Y/R/B/O	NT_028179	AC020999	93739736	1	chr5	NT_028179	AC094109	93100158	3	54823	2258	1841	58922
S/G/Y/R/B/O	NT_028179	AC020999	93739736	1			AC068323	162078059	3	54823	2258	1841	58922
S/G/Y/R/B/O	NT_028179	AC020999	93739736	1			AC093266	162106102	1	15148	0	0	15148
S/G/Y/R/B/O	NT_028179	AC020999	93739736	1			AC104122	93100158	3	15149	0	0	15149
S/G/Y/R/B/O	NT_028179	AC016016	93745943	1
S/G/Y/R/B/O	NT_028179	AC016016	93745943	1	chr5	NT_028179	AC008903	92454817	3	43646	13124	9780	66550
S/G/Y/R/B/O	NT_028179	AC016016	93745943	1	chr5	NT_028179	AC093530	92505364	3	42329	12112	7286	61727
S/G/Y/R/B/O	NT_028179	AC016016	93745943	1			AC026804	92356677	2	37604	7331	16879	61814
S/G/Y/R/B/O	NT_028179	AC016016	93745943	1			AC073432	92356677	1	58634	13960	20115	92709
S/G/Y/R/B/O	NT_028179	AC016016	93745943	1			AC093276	92356677	1	36167	17753	11520	65440