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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_026281 | AC019273 | 34436589 | 1 | chr5 | NT_026281 | AC092282 | 34437828 | 1 | 33616 | 0 | 0 | 33616 |
| S/G/Y/R/B/O |
NT_026281 | AC019273 | 34436589 | 1 | chr5 | NT_026281 | AC025472 | 34440666 | 3 | 117420 | 0 | 1130 | 118550 |
| S/G/Y/R/B/O |
NT_026281 | AC019273 | 34436589 | 1 | chr5 | NT_026281 | AC108119 | 34822082 | 1 | 20872 | 0 | 0 | 20872 |
| S/G/Y/R/B/O |
NT_026281 | AC019273 | 34436589 | 1 |   |   | AC011650 | 34323685 | 1 | 62312 | 0 | 0 | 62312 |
| S/G/Y/R/B/O |
NT_026281 | AC092282 | 34437828 | 1 | chr5 | NT_026281 | AC025472 | 34440666 | 3 | 59904 | 0 | 0 | 59904 |
| S/G/Y/R/B/O |
NT_026281 | AC092282 | 34437828 | 1 |   |   | AC011650 | 34822082 | 1 | 41913 | 0 | 7675 | 49588 |
| S/G/Y/R/B/O |
NT_026281 | AC025472 | 34440666 | 3 | chr5 | NT_026281 | AC034231 | 34612410 | 3 | 4774 | 0 | 0 | 4774 |
| S/G/Y/R/B/O |
NT_026281 | AC025472 | 34440666 | 3 | chr5 | NT_026281 | AC019273 | 34436589 | 1 | 117420 | 0 | 1130 | 118550 |
| S/G/Y/R/B/O |
NT_026281 | AC025472 | 34440666 | 3 | chr5 | NT_026281 | AC108119 | 34822082 | 1 | 52448 | 0 | 0 | 52448 |
| S/G/Y/R/B/O |
NT_026281 | AC025472 | 34440666 | 3 |   |   | AC011650 | 34440666 | 1 | 162867 | 4179 | 0 | 167046 |
| S/G/Y/R/B/O |
NT_026281 | AC034231 | 34612410 | 3 | chr5 | NT_026281 | AC025441 | 34641761 | 3 | 21972 | 0 | 0 | 21972 |
| S/G/Y/R/B/O |
NT_026281 | AC034231 | 34612410 | 3 | chr5 | NT_026281 | AC108119 | 34822082 | 1 | 34063 | 0 | 0 | 34063 |
| S/G/Y/R/B/O |
NT_026281 | AC034231 | 34612410 | 3 |   |   | AC012632 | 34822082 | 2 | 21888 | 0 | 0 | 21888 |
| S/G/Y/R/B/O |
NT_026281 | AC025441 | 34641761 | 3 | chr5 | NT_026281 | AC034232 | 34676541 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_026281 | AC025441 | 34641761 | 3 | chr5 | NT_026281 | AC026710 | 34778716 | 2 | 33642 | 0 | 4177 | 37819 |
| S/G/Y/R/B/O |
NT_026281 | AC025441 | 34641761 | 3 | chr5 | NT_026281 | AC108119 | 34822082 | 1 | 56617 | 0 | 0 | 56617 |
| S/G/Y/R/B/O |
NT_026281 | AC025441 | 34641761 | 3 | chr5 | NT_026281 | AC109493 | 34806903 | 1 | 32665 | 0 | 0 | 32665 |
| S/G/Y/R/B/O |
NT_026281 | AC025441 | 34641761 | 3 |   |   | AC012632 | 34824504 | 2 | 27583 | 0 | 0 | 27583 |
| S/G/Y/R/B/O |
NT_026281 | AC025441 | 34641761 | 3 |   |   | AC024570 | 34824504 | 2 | 18556 | 0 | 0 | 18556 |
| S/G/Y/R/B/O |
NT_026281 | AC034232 | 34676541 | 3 | chr5 | NT_026281 | AC026710 | 34778716 | 2 | 86695 | 0 | 12244 | 98939 |
| S/G/Y/R/B/O |
NT_026281 | AC034232 | 34676541 | 3 | chr5 | NT_026281 | AC008899 | 34824504 | 1 | 36774 | 0 | 15193 | 51967 |
| S/G/Y/R/B/O |
NT_026281 | AC034232 | 34676541 | 3 | chr5 | NT_026281 | AC092283 | 34780207 | 1 | 101423 | 0 | 0 | 101423 |
| S/G/Y/R/B/O |
NT_026281 | AC034232 | 34676541 | 3 | chr5 | NT_026281 | AC108119 | 34822082 | 1 | 51588 | 0 | 0 | 51588 |
| S/G/Y/R/B/O |
NT_026281 | AC034232 | 34676541 | 3 | chr5 | NT_026281 | AC109493 | 34806903 | 1 | 101289 | 0 | 0 | 101289 |
| S/G/Y/R/B/O |
NT_026281 | AC034232 | 34676541 | 3 |   |   | AC024570 | 34824504 | 2 | 60386 | 0 | 0 | 60386 |
| S/G/Y/R/B/O |
NT_026281 | AC026710 | 34778716 | 2 | chr5 | NT_026281 | AC092283 | 34780207 | 1 | 108059 | 2751 | 16429 | 127239 |
| S/G/Y/R/B/O |
NT_026281 | AC026710 | 34778716 | 2 | chr5 | NT_026281 | AC008899 | 34824504 | 1 | 42150 | 0 | 10348 | 52498 |
| S/G/Y/R/B/O |
NT_026281 | AC026710 | 34778716 | 2 | chr5 | NT_026281 | AC025441 | 34641761 | 3 | 33642 | 0 | 4177 | 37819 |
| S/G/Y/R/B/O |
NT_026281 | AC026710 | 34778716 | 2 | chr5 | NT_026281 | AC108119 | 34822082 | 1 | 68132 | 0 | 17191 | 85323 |
| S/G/Y/R/B/O |
NT_026281 | AC026710 | 34778716 | 2 | chr5 | NT_026281 | AC109493 | 34806903 | 1 | 82468 | 2751 | 36298 | 121517 |
| S/G/Y/R/B/O |
NT_026281 | AC026710 | 34778716 | 2 |   |   | AC024570 | 34824504 | 2 | 54787 | 0 | 4182 | 58969 |
| S/G/Y/R/B/O |
NT_026281 | AC092283 | 34780207 | 1 | chr5 | NT_026281 | AC109493 | 34806903 | 1 | 117035 | 0 | 0 | 117035 |
| S/G/Y/R/B/O |
NT_026281 | AC092283 | 34780207 | 1 | chr5 | NT_026281 | AC008899 | 34824504 | 1 | 32274 | 2303 | 41998 | 76575 |
| S/G/Y/R/B/O |
NT_026281 | AC092283 | 34780207 | 1 | chr5 | NT_026281 | AC034232 | 34676541 | 3 | 101423 | 0 | 0 | 101423 |
| S/G/Y/R/B/O |
NT_026281 | AC092283 | 34780207 | 1 | chr5 | NT_026281 | AC108119 | 34822082 | 1 | 51580 | 0 | 0 | 51580 |
| S/G/Y/R/B/O |
NT_026281 | AC092283 | 34780207 | 1 | chr5 | NT_026281 | AC109491 | 34829597 | 1 | 15841 | 0 | 0 | 15841 |
| S/G/Y/R/B/O |
NT_026281 | AC092283 | 34780207 | 1 |   |   | AC024570 | 34824504 | 2 | 60269 | 0 | 0 | 60269 |
| S/G/Y/R/B/O |
NT_026281 | AC109493 | 34806903 | 1 | chr5 | NT_026281 | AC108119 | 34822082 | 1 | 51458 | 0 | 0 | 51458 |
| S/G/Y/R/B/O |
NT_026281 | AC109493 | 34806903 | 1 | chr5 | NT_026281 | AC008899 | 34824504 | 1 | 36761 | 2300 | 30311 | 69372 |
| S/G/Y/R/B/O |
NT_026281 | AC109493 | 34806903 | 1 | chr5 | NT_026281 | AC025441 | 34641761 | 3 | 32665 | 0 | 0 | 32665 |
| S/G/Y/R/B/O |
NT_026281 | AC109493 | 34806903 | 1 | chr5 | NT_026281 | AC026710 | 34778716 | 2 | 82468 | 2751 | 36298 | 121517 |
| S/G/Y/R/B/O |
NT_026281 | AC109493 | 34806903 | 1 | chr5 | NT_026281 | AC034232 | 34676541 | 3 | 101289 | 0 | 0 | 101289 |
| S/G/Y/R/B/O |
NT_026281 | AC109493 | 34806903 | 1 | chr5 | NT_026281 | AC109491 | 34829597 | 1 | 40071 | 1558 | 0 | 41629 |
| S/G/Y/R/B/O |
NT_026281 | AC109493 | 34806903 | 1 |   |   | AC012632 | 34824504 | 2 | 19589 | 0 | 0 | 19589 |
| S/G/Y/R/B/O |
NT_026281 | AC109493 | 34806903 | 1 |   |   | AC024570 | 34824504 | 2 | 84349 | 0 | 0 | 84349 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 | chr5 | NT_026281 | AC008899 | 34824504 | 1 | 25846 | 2299 | 12681 | 40826 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 | chr5 | NT_026281 | AC019273 | 34436589 | 1 | 20872 | 0 | 0 | 20872 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 | chr5 | NT_026281 | AC025441 | 34641761 | 3 | 56617 | 0 | 0 | 56617 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 | chr5 | NT_026281 | AC025472 | 34440666 | 3 | 52448 | 0 | 0 | 52448 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 | chr5 | NT_026281 | AC026710 | 34778716 | 2 | 68132 | 0 | 17191 | 85323 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 | chr5 | NT_026281 | AC034231 | 34612410 | 3 | 34063 | 0 | 0 | 34063 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 | chr5 | NT_026281 | AC034232 | 34676541 | 3 | 51588 | 0 | 0 | 51588 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 | chr5 | NT_026281 | AC092283 | 34780207 | 1 | 51580 | 0 | 0 | 51580 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 |   |   | AC011650 | 34824504 | 1 | 37843 | 1703 | 0 | 39546 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 |   |   | AC012632 | 34824504 | 2 | 63681 | 0 | 0 | 63681 |
| S/G/Y/R/B/O |
NT_026281 | AC108119 | 34822082 | 1 |   |   | AC024570 | 34436589 | 2 | 51585 | 0 | 0 | 51585 |
| S/G/Y/R/B/O |
NT_026281 | AC008899 | 34824504 | 1 | chr5 | NT_026281 | AC109491 | 34829597 | 1 | 12960 | 0 | 0 | 12960 |
| S/G/Y/R/B/O |
NT_026281 | AC008899 | 34824504 | 1 | chr5 | NT_026281 | AC026710 | 34778716 | 2 | 42150 | 0 | 10348 | 52498 |
| S/G/Y/R/B/O |
NT_026281 | AC008899 | 34824504 | 1 | chr5 | NT_026281 | AC034232 | 34676541 | 3 | 36774 | 0 | 15193 | 51967 |
| S/G/Y/R/B/O |
NT_026281 | AC008899 | 34824504 | 1 | chr5 | NT_026281 | AC092283 | 34780207 | 1 | 32274 | 2303 | 41998 | 76575 |
| S/G/Y/R/B/O |
NT_026281 | AC008899 | 34824504 | 1 | chr5 | NT_026281 | AC109493 | 34806903 | 1 | 36761 | 2300 | 30311 | 69372 |
| S/G/Y/R/B/O |
NT_026281 | AC008899 | 34824504 | 1 |   |   | AC024570 | 98965209 | 2 | 25900 | 2303 | 12710 | 40913 |
| S/G/Y/R/B/O |
NT_026281 | AC109491 | 34829597 | 1 | chr5 | NT_026281 | AC008880 | 34895630 | 3 | 39635 | 0 | 15525 | 55160 |
| S/G/Y/R/B/O |
NT_026281 | AC109491 | 34829597 | 1 | chr5 | NT_026281 | AC092283 | 34780207 | 1 | 15841 | 0 | 0 | 15841 |
| S/G/Y/R/B/O |
NT_026281 | AC109491 | 34829597 | 1 | chr5 | NT_026281 | AC109493 | 34806903 | 1 | 40071 | 1558 | 0 | 41629 |
| S/G/Y/R/B/O |
NT_026281 | AC008880 | 34895630 | 3 | chr5 | NT_026281 | AC016613 | 35001605 | 3 | 71389 | 0 | 0 | 71389 |
| S/G/Y/R/B/O |
NT_026281 | AC008880 | 34895630 | 3 | chr5 | NT_026281 | AC008826 | 35049908 | 1 | 29985 | 0 | 0 | 29985 |
| S/G/Y/R/B/O |
NT_026281 | AC016613 | 35001605 | 3 | chr5 | NT_026281 | AC008826 | 35049908 | 1 | 78183 | 0 | 0 | 78183 |
| S/G/Y/R/B/O |
NT_026281 | AC016613 | 35001605 | 3 | chr5 | NT_023085 | AC091841 | 35114893 | 2 | 23464 | 0 | 0 | 23464 |
| S/G/Y/R/B/O |
NT_026281 | AC008826 | 35049908 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_026281 | AC008826 | 35049908 | 1 | chr5 | NT_026281 | AC008880 | 34895630 | 3 | 29985 | 0 | 0 | 29985 |
| S/G/Y/R/B/O |
NT_026281 | AC008826 | 35049908 | 1 | chr5 | NT_023085 | AC091841 | 35114893 | 2 | 21941 | 0 | 0 | 21941 |
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