Chromosome 5 - Clone Overlaps - Single Contig
Description of this page
Main Reports Page
Main Assembly Page
Main Overlap Page
Whole Chromosome
Single Contigs
Line color code:
White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly
NT_033086
NT_023089
NT_006576
NT_033103
NT_029977
NT_016779
NT_033104
NT_023110
NT_033119
NT_023097
NT_023084
NT_023115
NT_023315
NT_033112
NT_006547
NT_023162
NT_006577
NT_023114
NT_023216
NT_023124
NT_026281
NT_023085
NT_033113
NT_033110
NT_006679
NT_023195
NT_033085
NT_006702
NT_023098
NT_028188
NT_031794
NT_023102
NT_023081
NT_006693
NT_016864
NT_033115
NT_033092
NT_006665
NT_006497
NT_006431
NT_033093
NT_006790
NT_006713
NT_026283
NT_023083
NT_033077
NT_033111
NT_033079
NT_007022
NT_006540
NT_030680
NT_029973
NT_028179
NT_033118
NT_006731
NT_023148
NT_023290
NT_033094
NT_033116
NT_006654
NT_033095
NT_033098
NT_033082
NT_033096
NT_023091
NT_006789
NT_033108
NT_006899
NT_006780
NT_030685
NT_025721
NT_033106
NT_025702
NT_023192
NT_029295
NT_033097
NT_016755
NT_029975
NT_033083
NT_033084
NT_023238
NT_033105
NT_007072
NT_033091
NT_016714
NT_006859
NT_006489
NT_029289
NT_033078
NT_023269
NT_023248
NT_030691
NT_006788
NT_030698
NT_033117
NT_033080
NT_023133
NT_006907
NT_023132
NT_033089
NT_006725
NT_023093
NT_006802
NT_006932
NT_006519
NT_023162
Links
Contig1
Acc1
Start1
Phs
Chr2
Contig2
Acc2
Start2
Phs
Strong Overlap
Medium Overlap
Weak Overlap
Total Overlap
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC114282
26784701
1
chr5
NT_023162
AC093294
26883220
3
0
1609
78193
79802
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC114282
26784701
1
chr5
NT_023162
AC113431
27128934
1
68474
0
1585
70059
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC093294
26883220
3
chr5
NT_023162
AC112174
26982155
1
51286
0
34286
85572
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC093294
26883220
3
chr5
NT_023162
AC113370
26996621
1
53354
0
0
53354
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC093294
26883220
3
chr5
NT_023162
AC113431
27128934
1
31590
0
0
31590
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC112174
26982155
1
chr5
NT_023162
AC113370
26996621
1
68308
0
0
68308
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC113370
26996621
1
chr5
NT_023162
AC113431
27128934
1
0
0
0
0
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC113370
26996621
1
chr5
NT_006547
AC010474
26598420
3
33718
0
0
33718
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC113370
26996621
1
chr5
NT_023162
AC093294
26883220
3
53354
0
0
53354
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC113370
26996621
1
chr5
NT_006547
AC109469
26639265
1
49170
0
51074
100244
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC113431
27128934
1
chr5
NT_023162
AC025475
27208122
3
17113
0
0
17113
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC113431
27128934
1
chr5
NT_023162
AC093294
26883220
3
31590
0
0
31590
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC113431
27128934
1
chr5
NT_023162
AC114282
26784701
1
68474
0
1585
70059
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC025475
27208122
3
chr5
NT_023162
AC010483
27394584
3
42043
0
0
42043
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC010483
27394584
3
chr5
NT_023162
AC026426
27446473
3
14503
0
0
14503
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC026426
27446473
3
chr5
NT_023162
AC113347
27500401
1
0
1862
0
1862
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC113347
27500401
1
chr5
NT_023162
AC025760
27525598
3
65848
0
0
65848
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC113347
27500401
1
chr5
NT_023162
AC027321
27755590
1
42964
5528
8144
56636
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC113347
27500401
1
chr5
NT_023162
AC027333
27618524
3
38761
0
0
38761
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC025760
27525598
3
chr5
NT_023162
AC027333
27618524
3
46107
0
0
46107
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC025760
27525598
3
chr5
NT_023162
AC027321
27755590
1
26782
2584
8144
37510
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC027333
27618524
3
chr5
NT_023162
AC022450
27752944
2
41637
0
0
41637
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC027333
27618524
3
chr5
NT_023162
AC027321
27755590
1
140441
14215
19753
174409
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC027333
27618524
3
chr5
NT_023162
AC113347
27500401
1
38761
0
0
38761
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC022450
27752944
2
chr5
NT_023162
AC027321
27755590
1
13906
2348
2945
19199
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC027321
27755590
1
chr5
NT_023162
AC010470
27917049
3
0
0
0
0
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC027321
27755590
1
chr5
NT_006731
AC008534
96289692
3
12995
0
1725
14720
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC027321
27755590
1
chr5
NT_006731
AC012312
96539603
3
10405
0
0
10405
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC027321
27755590
1
chr5
NT_023162
AC025760
27525598
3
26782
2584
8144
37510
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC027321
27755590
1
chr5
NT_023162
AC027333
27618524
3
140441
14215
19753
174409
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC027321
27755590
1
chr5
NT_023162
AC113347
27500401
1
42964
5528
8144
56636
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC027321
27755590
1
 
 
AC027303
87985817
2
23298
0
1726
25024
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC010470
27917049
3
chr5
NT_023162
AC093308
28047865
1
13795
0
0
13795
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC093308
28047865
1
chr5
NT_023162
AC112193
28052127
1
129809
0
2394
132203
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC112193
28052127
1
 
 
 
 
 
 
 
 
 
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC112193
28052127
1
chr5
NT_006577
AC021405
28273230
1
22296
1741
3296
27333
S
/
G
/
Y
/
R
/
B
/
O
NT_023162
AC112193
28052127
1
chr5
NT_006577
AC022439
28273295
3
28350
0
0
28350