Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_006693

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_006693	AC027153	51625383	1	chr5	NT_006693	AC106817	51630825	1	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC027153	51625383	1	chr5	NT_006693	AC024569	54721398	3	17838	2809	1201	21848
S/G/Y/R/B/O	NT_006693	AC027153	51625383	1	chr5	NT_006693	AC025175	54888632	3	138037	1807	2794	142638
S/G/Y/R/B/O	NT_006693	AC027153	51625383	1			AC114979	54888632	1	122378	5189	4002	131569
S/G/Y/R/B/O	NT_006693	AC106817	51630825	1	chr5	NT_006693	AC091935	51665433	2	90633	0	18718	109351
S/G/Y/R/B/O	NT_006693	AC106817	51630825	1	chr5	NT_006693	AC116357	53380441	1	15839	0	0	15839
S/G/Y/R/B/O	NT_006693	AC091935	51665433	2	chr5	NT_006693	AC109998	51762247	3	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC091935	51665433	2	chr5	NT_006693	AC116357	53380441	1	62629	2631	0	65260
S/G/Y/R/B/O	NT_006693	AC109998	51762247	3	chr5	NT_006693	AC091903	51834077	3	54511	0	0	54511
S/G/Y/R/B/O	NT_006693	AC109998	51762247	3			AC091993	51834077	1	56405	2434	16146	74985
S/G/Y/R/B/O	NT_006693	AC091903	51834077	3	chr5	NT_006693	AC091920	51980730	1	48145	0	0	48145
S/G/Y/R/B/O	NT_006693	AC091903	51834077	3			AC091993	51980730	1	51922	3893	7136	62951
S/G/Y/R/B/O	NT_006693	AC091920	51980730	1	chr5	NT_006693	AC008827	52117278	3	13803	0	0	13803
S/G/Y/R/B/O	NT_006693	AC008827	52117278	3	chr5	NT_006693	AC022433	52168242	3	17158	0	0	17158
S/G/Y/R/B/O	NT_006693	AC022433	52168242	3	chr5	NT_006693	AC008936	52325153	3	14757	0	0	14757
S/G/Y/R/B/O	NT_006693	AC008936	52325153	3	chr5	NT_006693	AC091860	52381668	1	43185	0	0	43185
S/G/Y/R/B/O	NT_006693	AC091860	52381668	1	chr5	NT_006693	AC010478	52432564	3	34795	0	0	34795
S/G/Y/R/B/O	NT_006693	AC010478	52432564	3	chr5	NT_006693	AC026798	52534079	3	25337	0	0	25337
S/G/Y/R/B/O	NT_006693	AC026798	52534079	3	chr5	NT_006693	AC091834	52628509	3	26879	0	0	26879
S/G/Y/R/B/O	NT_006693	AC026798	52534079	3	chr5	NT_006693	AC091831	52801970	1	35297	3773	29620	68690
S/G/Y/R/B/O	NT_006693	AC091834	52628509	3	chr5	NT_006693	AC091866	52681967	3	66873	0	0	66873
S/G/Y/R/B/O	NT_006693	AC091834	52628509	3	chr5	NT_006693	AC022430	53180643	1	25743	0	0	25743
S/G/Y/R/B/O	NT_006693	AC091834	52628509	3	chr5	NT_006693	AC091831	52801970	1	40514	0	5299	45813
S/G/Y/R/B/O	NT_006693	AC091866	52681967	3	chr5	NT_006693	AC091831	52801970	1	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC091866	52681967	3	chr5	NT_006693	AC022430	53180643	1	36582	0	13995	50577
S/G/Y/R/B/O	NT_006693	AC091831	52801970	1	chr5	NT_006693	AC008808	52804809	3	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC091831	52801970	1	chr5	NT_006693	AC026798	52534079	3	35297	3773	29620	68690
S/G/Y/R/B/O	NT_006693	AC091831	52801970	1	chr5	NT_006693	AC091834	52628509	3	40514	0	5299	45813
S/G/Y/R/B/O	NT_006693	AC008808	52804809	3	chr5	NT_006693	AC008831	52844870	3	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC008808	52804809	3	chr5	NT_006693	AC016631	53193746	2	33069	2712	0	35781
S/G/Y/R/B/O	NT_006693	AC008831	52844870	3	chr5	NT_006693	AC008919	52967560	3	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC008831	52844870	3	chr5	NT_006693	AC016631	53193746	2	57176	4153	0	61329
S/G/Y/R/B/O	NT_006693	AC008831	52844870	3			AC008811	53180643	2	55284	4427	0	59711
S/G/Y/R/B/O	NT_006693	AC008831	52844870	3			AC022441	53193746	3	144573	0	0	144573
S/G/Y/R/B/O	NT_006693	AC008831	52844870	3			AC026788	53193746	3	103281	0	0	103281
S/G/Y/R/B/O	NT_006693	AC008831	52844870	3			AC027325	53193746	1	93834	2692	17232	113758
S/G/Y/R/B/O	NT_006693	AC008831	52844870	3			AC027350	53193746	2	101319	0	0	101319
S/G/Y/R/B/O	NT_006693	AC008831	52844870	3			AC114927	53193746	1	67424	0	0	67424
S/G/Y/R/B/O	NT_006693	AC008919	52967560	3	chr5	NT_006693	AC112187	53074249	1	32418	0	0	32418
S/G/Y/R/B/O	NT_006693	AC008919	52967560	3	chr1	NT_032947	AC017027	197681038	1	18533	0	0	18533
S/G/Y/R/B/O	NT_006693	AC008919	52967560	3			AC022441	197681038	3	67596	0	0	67596
S/G/Y/R/B/O	NT_006693	AC008919	52967560	3			AC027325	197681038	1	34347	0	28657	63004
S/G/Y/R/B/O	NT_006693	AC008919	52967560	3			AC074137	197681038	1	33232	0	0	33232
S/G/Y/R/B/O	NT_006693	AC008919	52967560	3			AC114927	53074249	1	52730	0	0	52730
S/G/Y/R/B/O	NT_006693	AC112187	53074249	1	chr5	NT_006693	AC022430	53180643	1	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC112187	53074249	1	chr1	NT_032947	AC017027	197681038	1	139356	2203	21128	162687
S/G/Y/R/B/O	NT_006693	AC112187	53074249	1			AC074137	197681038	1	10813	0	0	10813
S/G/Y/R/B/O	NT_006693	AC022430	53180643	1	chr5	NT_006693	AC016631	53193746	2	19287	2634	10921	32842
S/G/Y/R/B/O	NT_006693	AC022430	53180643	1	chr5	NT_006693	AC091834	52628509	3	25743	0	0	25743
S/G/Y/R/B/O	NT_006693	AC022430	53180643	1	chr5	NT_006693	AC091866	52681967	3	36582	0	13995	50577
S/G/Y/R/B/O	NT_006693	AC016631	53193746	2	chr5	NT_006693	AC008944	53245679	3	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC016631	53193746	2	chr5	NT_006693	AC008808	52804809	3	33069	2712	0	35781
S/G/Y/R/B/O	NT_006693	AC016631	53193746	2	chr5	NT_006693	AC008831	52844870	3	57176	4153	0	61329
S/G/Y/R/B/O	NT_006693	AC016631	53193746	2			AC022441	53180643	3	57237	4165	0	61402
S/G/Y/R/B/O	NT_006693	AC016631	53193746	2			AC026788	53180643	3	57162	4148	0	61310
S/G/Y/R/B/O	NT_006693	AC016631	53193746	2			AC027325	53180643	1	36576	2458	0	39034
S/G/Y/R/B/O	NT_006693	AC016631	53193746	2			AC027350	53180643	2	57104	4148	0	61252
S/G/Y/R/B/O	NT_006693	AC016631	53193746	2			AC114927	53180643	1	10165	4165	0	14330
S/G/Y/R/B/O	NT_006693	AC008944	53245679	3	chr5	NT_006693	AC116357	53380441	1	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC116357	53380441	1	chr5	NT_006693	AC091827	53506320	3	16993	0	0	16993
S/G/Y/R/B/O	NT_006693	AC116357	53380441	1	chr5	NT_006693	AC091935	51665433	2	62629	2631	0	65260
S/G/Y/R/B/O	NT_006693	AC116357	53380441	1	chr5	NT_006693	AC106817	51630825	1	15839	0	0	15839
S/G/Y/R/B/O	NT_006693	AC116357	53380441	1			AC009448	53074249	1	81008	1530	0	82538
S/G/Y/R/B/O	NT_006693	AC091827	53506320	3	chr5	NT_006693	AC022126	53671140	3	0	1524	0	1524
S/G/Y/R/B/O	NT_006693	AC091827	53506320	3			AC009448	51630825	1	74201	4555	17026	95782
S/G/Y/R/B/O	NT_006693	AC022126	53671140	3	chr5	NT_006693	AC008900	53857381	3	113743	0	0	113743
S/G/Y/R/B/O	NT_006693	AC022126	53671140	3			AC018652	53857381	1	107785	0	0	107785
S/G/Y/R/B/O	NT_006693	AC022126	53671140	3			AC108115	53506320	1	74921	0	62791	137712
S/G/Y/R/B/O	NT_006693	AC008900	53857381	3	chr5	NT_006693	AC026230	53909798	3	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC008900	53857381	3			AC018652	53506320	1	107906	0	0	107906
S/G/Y/R/B/O	NT_006693	AC008900	53857381	3			AC108115	53671140	1	36711	0	87006	123717
S/G/Y/R/B/O	NT_006693	AC026230	53909798	3	chr5	NT_006693	AC008910	53972122	3	70724	0	0	70724
S/G/Y/R/B/O	NT_006693	AC026230	53909798	3			AC018652	53972122	1	25608	2062	0	27670
S/G/Y/R/B/O	NT_006693	AC008910	53972122	3	chr5	NT_006693	AC027326	53979699	3	23538	0	0	23538
S/G/Y/R/B/O	NT_006693	AC027326	53979699	3	chr5	NT_006693	AC022133	53989885	3	4129	0	0	4129
S/G/Y/R/B/O	NT_006693	AC022133	53989885	3	chr5	NT_006693	AC025180	54039474	3	5644	0	0	5644
S/G/Y/R/B/O	NT_006693	AC025180	54039474	3	chr5	NT_006693	AC008966	54115891	3	20124	0	0	20124
S/G/Y/R/B/O	NT_006693	AC025180	54039474	3			AC008455	53979699	2	54759	0	0	54759
S/G/Y/R/B/O	NT_006693	AC008966	54115891	3	chr5	NT_006693	AC016641	54270529	2	25942	0	0	25942
S/G/Y/R/B/O	NT_006693	AC008966	54115891	3	chr5	NT_006693	AC026477	54299597	1	13449	0	24806	38255
S/G/Y/R/B/O	NT_006693	AC008966	54115891	3	chr5	NT_006693	AC026752	54355056	1	13449	0	24806	38255
S/G/Y/R/B/O	NT_006693	AC008966	54115891	3			AC008455	53989885	2	103577	2153	0	105730
S/G/Y/R/B/O	NT_006693	AC008966	54115891	3			AC008973	53989885	3	116936	0	0	116936
S/G/Y/R/B/O	NT_006693	AC008966	54115891	3			AC016619	75853843	2	89695	0	64617	154312
S/G/Y/R/B/O	NT_006693	AC016641	54270529	2	chr5	NT_006693	AC026477	54299597	1	61754	2534	20007	84295
S/G/Y/R/B/O	NT_006693	AC016641	54270529	2	chr5	NT_006693	AC008866	54327057	2	62733	1927	10484	75144
S/G/Y/R/B/O	NT_006693	AC016641	54270529	2	chr5	NT_006693	AC026752	54355056	1	61754	2534	20007	84295
S/G/Y/R/B/O	NT_006693	AC016641	54270529	2	chr5	NT_006693	AC027329	54379790	3	60689	6213	2863	69765
S/G/Y/R/B/O	NT_006693	AC016641	54270529	2	chr5	NT_006693	AC108114	54442772	2	19856	1932	0	21788
S/G/Y/R/B/O	NT_006693	AC016641	54270529	2			AC016619	75853843	2	14290	0	1334	15624
S/G/Y/R/B/O	NT_006693	AC026477	54299597	1	chr5	NT_006693	AC008866	54327057	2	40021	2536	9759	52316
S/G/Y/R/B/O	NT_006693	AC026477	54299597	1	chr5	NT_006693	AC008966	54115891	3	13449	0	24806	38255
S/G/Y/R/B/O	NT_006693	AC026477	54299597	1	chr5	NT_006693	AC026752	54355056	1	97324	2615	1021	100960
S/G/Y/R/B/O	NT_006693	AC026477	54299597	1	chr5	NT_006693	AC027329	54379790	3	28240	0	0	28240
S/G/Y/R/B/O	NT_006693	AC026477	54299597	1			AC016619	75853843	2	13449	0	4772	18221
S/G/Y/R/B/O	NT_006693	AC008866	54327057	2	chr5	NT_006693	AC026752	54355056	1	40021	2536	9759	52316
S/G/Y/R/B/O	NT_006693	AC008866	54327057	2	chr5	NT_006693	AC016641	54270529	2	62733	1927	10484	75144
S/G/Y/R/B/O	NT_006693	AC008866	54327057	2	chr5	NT_006693	AC027329	54379790	3	93213	0	2035	95248
S/G/Y/R/B/O	NT_006693	AC008866	54327057	2	chr5	NT_006693	AC108114	54442772	2	47483	0	2036	49519
S/G/Y/R/B/O	NT_006693	AC026752	54355056	1	chr5	NT_006693	AC027329	54379790	3	28240	0	0	28240
S/G/Y/R/B/O	NT_006693	AC026752	54355056	1	chr5	NT_006693	AC008966	54115891	3	13449	0	24806	38255
S/G/Y/R/B/O	NT_006693	AC026752	54355056	1	chr5	NT_006693	AC016641	54270529	2	61754	2534	20007	84295
S/G/Y/R/B/O	NT_006693	AC026752	54355056	1	chr5	NT_006693	AC026477	54299597	1	97324	2615	1021	100960
S/G/Y/R/B/O	NT_006693	AC026752	54355056	1			AC016619	75853843	2	13449	0	4772	18221
S/G/Y/R/B/O	NT_006693	AC027329	54379790	3	chr5	NT_006693	AC108114	54442772	2	77483	0	0	77483
S/G/Y/R/B/O	NT_006693	AC027329	54379790	3	chr5	NT_006693	AC008866	54327057	2	93213	0	2035	95248
S/G/Y/R/B/O	NT_006693	AC027329	54379790	3	chr5	NT_006693	AC016641	54270529	2	60689	6213	2863	69765
S/G/Y/R/B/O	NT_006693	AC027329	54379790	3	chr5	NT_006693	AC026477	54299597	1	28240	0	0	28240
S/G/Y/R/B/O	NT_006693	AC108114	54442772	2	chr5	NT_006693	AC008901	54555482	3	28644	1711	0	30355
S/G/Y/R/B/O	NT_006693	AC108114	54442772	2	chr5	NT_006693	AC008866	54327057	2	47483	0	2036	49519
S/G/Y/R/B/O	NT_006693	AC108114	54442772	2	chr5	NT_006693	AC016641	54270529	2	19856	1932	0	21788
S/G/Y/R/B/O	NT_006693	AC008901	54555482	3	chr5	NT_006693	AC024569	54721398	3	26313	0	0	26313
S/G/Y/R/B/O	NT_006693	AC024569	54721398	3	chr5	NT_006693	AC025175	54888632	3	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC024569	54721398	3	chr5	NT_006693	AC027153	51625383	1	17838	2809	1201	21848
S/G/Y/R/B/O	NT_006693	AC024569	54721398	3			AC020977	54555482	3	155830	0	0	155830
S/G/Y/R/B/O	NT_006693	AC024569	54721398	3			AC114979	51625383	1	27320	0	0	27320
S/G/Y/R/B/O	NT_006693	AC025175	54888632	3	chr5	NT_006693	AC024571	55049598	3	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC025175	54888632	3	chr5	NT_006693	AC027153	51625383	1	138037	1807	2794	142638
S/G/Y/R/B/O	NT_006693	AC025175	54888632	3			AC008792	51625383	1	45825	0	0	45825
S/G/Y/R/B/O	NT_006693	AC025175	54888632	3			AC114979	51625383	1	147636	0	2984	150620
S/G/Y/R/B/O	NT_006693	AC024571	55049598	3	chr5	NT_006693	AC016601	55127922	3	49595	0	0	49595
S/G/Y/R/B/O	NT_006693	AC024571	55049598	3			AC008792	51625383	1	66623	0	0	66623
S/G/Y/R/B/O	NT_006693	AC024571	55049598	3			AC026006	55127922	1	41606	6405	0	48011
S/G/Y/R/B/O	NT_006693	AC016601	55127922	3	chr5	NT_006693	AC008882	55223590	3	95673	0	0	95673
S/G/Y/R/B/O	NT_006693	AC016601	55127922	3			AC008777	51625383	2	43720	0	0	43720
S/G/Y/R/B/O	NT_006693	AC016601	55127922	3			AC008792	51625383	1	61979	0	0	61979
S/G/Y/R/B/O	NT_006693	AC016601	55127922	3			AC026006	55049598	1	111943	8578	9254	129775
S/G/Y/R/B/O	NT_006693	AC016601	55127922	3			AC026476	55049598	2	50671	0	711	51382
S/G/Y/R/B/O	NT_006693	AC008882	55223590	3	chr5	NT_006693	AC034246	55251998	3	80797	0	0	80797
S/G/Y/R/B/O	NT_006693	AC008882	55223590	3			AC008777	55049598	2	102955	0	0	102955
S/G/Y/R/B/O	NT_006693	AC008882	55223590	3			AC026006	55127922	1	80092	2173	9254	91519
S/G/Y/R/B/O	NT_006693	AC008882	55223590	3			AC026476	55127922	2	64321	5300	3250	72871
S/G/Y/R/B/O	NT_006693	AC034246	55251998	3	chr5	NT_006693	AC008935	55326094	3	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC034246	55251998	3	chr5	NT_006693	AC016581	55651615	1	26921	0	0	26921
S/G/Y/R/B/O	NT_006693	AC034246	55251998	3			AC008777	55251998	2	96063	0	0	96063
S/G/Y/R/B/O	NT_006693	AC034246	55251998	3			AC008960	55223590	3	66953	0	0	66953
S/G/Y/R/B/O	NT_006693	AC034246	55251998	3			AC016580	55223590	3	101013	0	0	101013
S/G/Y/R/B/O	NT_006693	AC034246	55251998	3			AC026006	55651615	1	28045	0	9304	37349
S/G/Y/R/B/O	NT_006693	AC034246	55251998	3			AC026476	55651615	2	76235	10143	30425	116803
S/G/Y/R/B/O	NT_006693	AC008935	55326094	3	chr5	NT_006693	AC008873	55416353	3	44446	0	0	44446
S/G/Y/R/B/O	NT_006693	AC008935	55326094	3	chr5	NT_006693	AC016581	55651615	1	14922	0	55093	70015
S/G/Y/R/B/O	NT_006693	AC008935	55326094	3			AC016580	55416353	3	95126	0	0	95126
S/G/Y/R/B/O	NT_006693	AC008873	55416353	3	chr5	NT_006693	AC092366	55542263	3	93508	0	0	93508
S/G/Y/R/B/O	NT_006693	AC008873	55416353	3	chr5	NT_006693	AC016581	55651615	1	68954	0	0	68954
S/G/Y/R/B/O	NT_006693	AC008873	55416353	3			AC016580	55326094	3	37096	0	0	37096
S/G/Y/R/B/O	NT_006693	AC092366	55542263	3	chr5	NT_006693	AC091888	55606890	2	10991	0	0	10991
S/G/Y/R/B/O	NT_006693	AC091888	55606890	2	chr5	NT_006693	AC010835	55634562	1	66449	19403	9469	95321
S/G/Y/R/B/O	NT_006693	AC091888	55606890	2	chr5	NT_006693	AC008928	55664980	3	90166	2522	0	92688
S/G/Y/R/B/O	NT_006693	AC010835	55634562	1	chr5	NT_006693	AC016581	55651615	1	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC010835	55634562	1	chr5	NT_006693	AC008928	55664980	3	62658	8684	10086	81428
S/G/Y/R/B/O	NT_006693	AC010835	55634562	1	chr5	NT_006693	AC016583	55775277	3	14182	6863	2545	23590
S/G/Y/R/B/O	NT_006693	AC016581	55651615	1	chr5	NT_006693	AC008928	55664980	3	0	0	0	0
S/G/Y/R/B/O	NT_006693	AC016581	55651615	1	chr5	NT_006693	AC008873	55416353	3	68954	0	0	68954
S/G/Y/R/B/O	NT_006693	AC016581	55651615	1	chr5	NT_006693	AC008935	55326094	3	14922	0	55093	70015
S/G/Y/R/B/O	NT_006693	AC016581	55651615	1	chr5	NT_006693	AC034246	55251998	3	26921	0	0	26921
S/G/Y/R/B/O	NT_006693	AC016581	55651615	1			AC008960	55326094	3	27654	0	5618	33272
S/G/Y/R/B/O	NT_006693	AC016581	55651615	1			AC016580	55326094	3	42525	0	55037	97562
S/G/Y/R/B/O	NT_006693	AC008928	55664980	3	chr5	NT_006693	AC016583	55775277	3	44155	0	0	44155
S/G/Y/R/B/O	NT_006693	AC008928	55664980	3	chr5	NT_006693	AC010835	55634562	1	62658	8684	10086	81428
S/G/Y/R/B/O	NT_006693	AC008928	55664980	3	chr5	NT_006693	AC091888	55606890	2	90166	2522	0	92688
S/G/Y/R/B/O	NT_006693	AC016583	55775277	3
S/G/Y/R/B/O	NT_006693	AC016583	55775277	3	chr5	NT_006693	AC010835	55634562	1	14182	6863	2545	23590