Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_023089

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_023089	AC034218	302496	3	chr5	NT_023089	AC025187	374270	3	62989	0	0	62989
S/G/Y/R/B/O	NT_023089	AC025187	374270	3	chr5	NT_023089	AC025773	472274	3	39215	0	0	39215
S/G/Y/R/B/O	NT_023089	AC025187	374270	3			AC024436	374270	1	14382	2144	0	16526
S/G/Y/R/B/O	NT_023089	AC025773	472274	3	chr5	NT_023089	AC092319	618150	1	39839	3999	0	43838
S/G/Y/R/B/O	NT_023089	AC025773	472274	3			AC024436	302496	1	79790	4339	13752	97881
S/G/Y/R/B/O	NT_023089	AC025773	472274	3			AC091954	374270	1	64224	0	1362	65586
S/G/Y/R/B/O	NT_023089	AC025773	472274	3			AC112201	618150	1	51126	0	0	51126
S/G/Y/R/B/O	NT_023089	AC092319	618150	1	chr5	NT_023089	AC092266	705449	2	0	0	0	0
S/G/Y/R/B/O	NT_023089	AC092319	618150	1	chr5	NT_023089	AC026903	2257958	1	32092	1638	11187	44917
S/G/Y/R/B/O	NT_023089	AC092319	618150	1			AC024436	618150	1	81751	2426	3186	87363
S/G/Y/R/B/O	NT_023089	AC092319	618150	1			AC091954	2171937	1	26943	4410	87581	118934
S/G/Y/R/B/O	NT_023089	AC092319	618150	1			AC112201	2171937	1	129041	0	0	129041
S/G/Y/R/B/O	NT_023089	AC092266	705449	2	chr5	NT_023089	AC113359	711393	1	18153	0	0	18153
S/G/Y/R/B/O	NT_023089	AC092266	705449	2	chr5	NT_023089	AC021178	769623	1	92324	6841	40801	139966
S/G/Y/R/B/O	NT_023089	AC092266	705449	2	chr5	NT_023089	AC023388	931021	1	61902	0	0	61902
S/G/Y/R/B/O	NT_023089	AC092266	705449	2	chr5	NT_023089	AC026709	830491	2	56359	0	0	56359
S/G/Y/R/B/O	NT_023089	AC113359	711393	1	chr5	NT_023089	AC021178	769623	1	0	0	0	0
S/G/Y/R/B/O	NT_023089	AC021178	769623	1	chr5	NT_023089	AC026709	830491	2	62897	0	15512	78409
S/G/Y/R/B/O	NT_023089	AC021178	769623	1	chr5	NT_023089	AC023388	931021	1	23989	1870	13401	39260
S/G/Y/R/B/O	NT_023089	AC021178	769623	1	chr5	NT_023089	AC092266	705449	2	92324	6841	40801	139966
S/G/Y/R/B/O	NT_023089	AC026709	830491	2	chr5	NT_023089	AC025228	926020	1	60771	1661	12420	74852
S/G/Y/R/B/O	NT_023089	AC026709	830491	2	chr5	NT_023089	AC023388	931021	1	134197	8530	0	142727
S/G/Y/R/B/O	NT_023089	AC026709	830491	2	chr5	NT_023089	AC025775	955936	3	26553	0	0	26553
S/G/Y/R/B/O	NT_023089	AC026709	830491	2	chr5	NT_023089	AC092266	705449	2	56359	0	0	56359
S/G/Y/R/B/O	NT_023089	AC025228	926020	1	chr5	NT_023089	AC023388	931021	1	29203	2784	3641	35628
S/G/Y/R/B/O	NT_023089	AC025228	926020	1	chr5	NT_023089	AC025775	955936	3	68099	3593	16401	88093
S/G/Y/R/B/O	NT_023089	AC025228	926020	1	chr5	NT_023089	AC093224	1051718	3	23161	0	0	23161
S/G/Y/R/B/O	NT_023089	AC025228	926020	1			AC016852	705449	1	11529	0	0	11529
S/G/Y/R/B/O	NT_023089	AC025228	926020	1			AC099496	1051718	1	19522	0	0	19522
S/G/Y/R/B/O	NT_023089	AC023388	931021	1	chr5	NT_023089	AC025775	955936	3	22206	0	0	22206
S/G/Y/R/B/O	NT_023089	AC023388	931021	1	chr5	NT_023089	AC021178	769623	1	23989	1870	13401	39260
S/G/Y/R/B/O	NT_023089	AC023388	931021	1	chr5	NT_023089	AC026709	830491	2	134197	8530	0	142727
S/G/Y/R/B/O	NT_023089	AC023388	931021	1	chr5	NT_023089	AC092266	705449	2	61902	0	0	61902
S/G/Y/R/B/O	NT_023089	AC025775	955936	3	chr5	NT_023089	AC093224	1051718	3	0	0	0	0
S/G/Y/R/B/O	NT_023089	AC025775	955936	3	chr5	NT_023089	AC025228	926020	1	68099	3593	16401	88093
S/G/Y/R/B/O	NT_023089	AC025775	955936	3	chr5	NT_023089	AC026709	830491	2	26553	0	0	26553
S/G/Y/R/B/O	NT_023089	AC093224	1051718	3	chr5	NT_023089	AC026791	1092979	3	13892	0	0	13892
S/G/Y/R/B/O	NT_023089	AC093224	1051718	3	chr5	NT_023089	AC025228	926020	1	23161	0	0	23161
S/G/Y/R/B/O	NT_023089	AC093224	1051718	3			AC016852	830491	1	43119	0	0	43119
S/G/Y/R/B/O	NT_023089	AC093224	1051718	3			AC099496	1092979	1	49984	0	0	49984
S/G/Y/R/B/O	NT_023089	AC026791	1092979	3	chr5	NT_023089	AC091891	1233405	3	53748	0	0	53748
S/G/Y/R/B/O	NT_023089	AC026791	1092979	3			AC016852	1092979	1	125010	2443	4825	132278
S/G/Y/R/B/O	NT_023089	AC026791	1092979	3			AC099496	1051718	1	138803	0	0	138803
S/G/Y/R/B/O	NT_023089	AC091891	1233405	3	chr5	NT_023089	AC025937	1336279	1	77020	9302	1144	87466
S/G/Y/R/B/O	NT_023089	AC091891	1233405	3	chr5	NT_023089	AC116359	1343430	1	62731	0	7794	70525
S/G/Y/R/B/O	NT_023089	AC091891	1233405	3			AC016852	1051718	1	29637	2447	0	32084
S/G/Y/R/B/O	NT_023089	AC091891	1233405	3			AC091890	1092979	3	72155	0	0	72155
S/G/Y/R/B/O	NT_023089	AC091891	1233405	3			AC099496	1092979	1	43107	0	0	43107
S/G/Y/R/B/O	NT_023089	AC025937	1336279	1	chr5	NT_023089	AC116359	1343430	1	101873	10906	4629	117408
S/G/Y/R/B/O	NT_023089	AC025937	1336279	1	chr5	NT_023089	AC094105	1381583	1	46321	1581	1321	49223
S/G/Y/R/B/O	NT_023089	AC116359	1343430	1	chr5	NT_023089	AC094105	1381583	1	61921	2006	17420	81347
S/G/Y/R/B/O	NT_023089	AC116359	1343430	1	chr5	NT_023089	AC025324	1448495	1	10716	0	0	10716
S/G/Y/R/B/O	NT_023089	AC116359	1343430	1	chr5	NT_023089	AC091891	1233405	3	62731	0	7794	70525
S/G/Y/R/B/O	NT_023089	AC094105	1381583	1	chr5	NT_023089	AC025324	1448495	1	70136	0	27399	97535
S/G/Y/R/B/O	NT_023089	AC094105	1381583	1	chr5	NT_023089	AC025937	1336279	1	46321	1581	1321	49223
S/G/Y/R/B/O	NT_023089	AC025324	1448495	1	chr5	NT_023089	AC112192	1523714	2	35531	0	0	35531
S/G/Y/R/B/O	NT_023089	AC025324	1448495	1	chr5	NT_023089	AC116359	1343430	1	10716	0	0	10716
S/G/Y/R/B/O	NT_023089	AC112192	1523714	2	chr5	NT_023089	AC091832	1563289	3	118844	0	2032	120876
S/G/Y/R/B/O	NT_023089	AC112192	1523714	2	chr5	NT_023089	AC025460	1751258	3	44462	0	2035	46497
S/G/Y/R/B/O	NT_023089	AC112192	1523714	2			AC018427	1343430	2	96422	0	2032	98454
S/G/Y/R/B/O	NT_023089	AC112192	1523714	2			AC022051	1343430	1	63672	0	0	63672
S/G/Y/R/B/O	NT_023089	AC091832	1563289	3	chr5	NT_023089	AC025460	1751258	3	150423	0	0	150423
S/G/Y/R/B/O	NT_023089	AC091832	1563289	3	chr5	NT_023089	AC013801	1837804	1	59519	0	0	59519
S/G/Y/R/B/O	NT_023089	AC091832	1563289	3			AC018427	1837804	2	158585	0	0	158585
S/G/Y/R/B/O	NT_023089	AC091832	1563289	3			AC022051	1837804	1	144027	0	0	144027
S/G/Y/R/B/O	NT_023089	AC025460	1751258	3	chr5	NT_023089	AC104121	1815050	2	13779	0	0	13779
S/G/Y/R/B/O	NT_023089	AC025460	1751258	3	chr5	NT_023089	AC013801	1837804	1	126411	0	0	126411
S/G/Y/R/B/O	NT_023089	AC025460	1751258	3	chr5	NT_023089	AC112192	1523714	2	44462	0	2035	46497
S/G/Y/R/B/O	NT_023089	AC025460	1751258	3			AC018427	1837804	2	125127	0	0	125127
S/G/Y/R/B/O	NT_023089	AC025460	1751258	3			AC022051	1837804	1	117375	0	0	117375
S/G/Y/R/B/O	NT_023089	AC104121	1815050	2	chr5	NT_023089	AC013801	1837804	1	48370	0	0	48370
S/G/Y/R/B/O	NT_023089	AC104121	1815050	2	chr5	NT_023089	AC010390	1912130	3	16477	931	0	17408
S/G/Y/R/B/O	NT_023089	AC104121	1815050	2	chr5	NT_023089	AC026743	1930880	3	15647	0	23572	39219
S/G/Y/R/B/O	NT_023089	AC013801	1837804	1	chr5	NT_023089	AC010390	1912130	3	0	0	0	0
S/G/Y/R/B/O	NT_023089	AC013801	1837804	1	chr5	NT_023089	AC025460	1751258	3	126411	0	0	126411
S/G/Y/R/B/O	NT_023089	AC013801	1837804	1	chr5	NT_023089	AC091832	1563289	3	59519	0	0	59519
S/G/Y/R/B/O	NT_023089	AC013801	1837804	1			AC018427	1930880	2	38451	1545	0	39996
S/G/Y/R/B/O	NT_023089	AC013801	1837804	1			AC022051	1930880	1	21840	1388	0	23228
S/G/Y/R/B/O	NT_023089	AC010390	1912130	3	chr5	NT_023089	AC026743	1930880	3	10892	0	0	10892
S/G/Y/R/B/O	NT_023089	AC010390	1912130	3	chr5	NT_023089	AC104121	1815050	2	16477	931	0	17408
S/G/Y/R/B/O	NT_023089	AC026743	1930880	3	chr5	NT_023089	AC016595	2091201	2	29296	4238	0	33534
S/G/Y/R/B/O	NT_023089	AC026743	1930880	3	chr5	NT_023089	AC104121	1815050	2	15647	0	23572	39219
S/G/Y/R/B/O	NT_023089	AC016595	2091201	2	chr5	NT_023089	AC010496	2094738	1	88235	4240	2370	94845
S/G/Y/R/B/O	NT_023089	AC016595	2091201	2	chr5	NT_023089	AC091947	2171937	1	39034	1982	0	41016
S/G/Y/R/B/O	NT_023089	AC010496	2094738	1	chr5	NT_023089	AC091947	2171937	1	0	0	0	0
S/G/Y/R/B/O	NT_023089	AC091947	2171937	1	chr5	NT_023089	AC026903	2257958	1	105238	8644	3958	117840
S/G/Y/R/B/O	NT_023089	AC091947	2171937	1	chr5	NT_023089	AC016595	2091201	2	39034	1982	0	41016
S/G/Y/R/B/O	NT_023089	AC091947	2171937	1			AC091954	2257958	1	21590	0	0	21590
S/G/Y/R/B/O	NT_023089	AC026903	2257958	1
S/G/Y/R/B/O	NT_023089	AC026903	2257958	1	chr5	NT_023089	AC092319	618150	1	32092	1638	11187	44917
S/G/Y/R/B/O	NT_023089	AC026903	2257958	1			AC091954	2171937	1	42305	1638	0	43943
S/G/Y/R/B/O	NT_023089	AC026903	2257958	1			AC112201	618150	1	25631	1638	0	27269