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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033115 | AC008435 | 57504760 | 1 | chr5 | NT_033115 | AC016638 | 57553018 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033115 | AC008435 | 57504760 | 1 | chr5 | NT_033115 | AC025470 | 59057053 | 3 | 64856 | 0 | 0 | 64856 |
| S/G/Y/R/B/O |
NT_033115 | AC008435 | 57504760 | 1 | chr5 | NT_033115 | AC034244 | 58467718 | 3 | 43899 | 1448 | 0 | 45347 |
| S/G/Y/R/B/O |
NT_033115 | AC016638 | 57553018 | 3 | chr5 | NT_033115 | AC008774 | 57735841 | 3 | 81440 | 0 | 0 | 81440 |
| S/G/Y/R/B/O |
NT_033115 | AC016638 | 57553018 | 3 | chr5 | NT_016864 | AC011121 | 57331929 | 1 | 119320 | 2612 | 0 | 121932 |
| S/G/Y/R/B/O |
NT_033115 | AC016638 | 57553018 | 3 | chr5 | NT_016864 | AC016585 | 57348581 | 1 | 116233 | 0 | 0 | 116233 |
| S/G/Y/R/B/O |
NT_033115 | AC016638 | 57553018 | 3 | chr5 | NT_033115 | AC034245 | 57782990 | 3 | 37814 | 0 | 0 | 37814 |
| S/G/Y/R/B/O |
NT_033115 | AC016638 | 57553018 | 3 |   |   | AC008921 | 57735841 | 2 | 87680 | 0 | 0 | 87680 |
| S/G/Y/R/B/O |
NT_033115 | AC016638 | 57553018 | 3 |   |   | AC023021 | 57348581 | 1 | 82283 | 3974 | 26307 | 112564 |
| S/G/Y/R/B/O |
NT_033115 | AC016638 | 57553018 | 3 |   |   | AC079469 | 57782990 | 2 | 131782 | 0 | 0 | 131782 |
| S/G/Y/R/B/O |
NT_033115 | AC008774 | 57735841 | 3 | chr5 | NT_033115 | AC034245 | 57782990 | 3 | 84830 | 0 | 0 | 84830 |
| S/G/Y/R/B/O |
NT_033115 | AC008774 | 57735841 | 3 |   |   | AC008921 | 57782990 | 2 | 106204 | 0 | 0 | 106204 |
| S/G/Y/R/B/O |
NT_033115 | AC008774 | 57735841 | 3 |   |   | AC016569 | 57782990 | 2 | 47829 | 0 | 0 | 47829 |
| S/G/Y/R/B/O |
NT_033115 | AC008774 | 57735841 | 3 |   |   | AC023021 | 57553018 | 1 | 84246 | 1703 | 0 | 85949 |
| S/G/Y/R/B/O |
NT_033115 | AC008774 | 57735841 | 3 |   |   | AC079469 | 57782990 | 2 | 23173 | 0 | 104843 | 128016 |
| S/G/Y/R/B/O |
NT_033115 | AC034245 | 57782990 | 3 | chr5 | NT_033115 | AC008391 | 57834095 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033115 | AC034245 | 57782990 | 3 | chr5 | NT_033115 | AC016638 | 57553018 | 3 | 37814 | 0 | 0 | 37814 |
| S/G/Y/R/B/O |
NT_033115 | AC034245 | 57782990 | 3 |   |   | AC008921 | 57735841 | 2 | 76252 | 0 | 0 | 76252 |
| S/G/Y/R/B/O |
NT_033115 | AC034245 | 57782990 | 3 |   |   | AC016569 | 57735841 | 2 | 124704 | 0 | 0 | 124704 |
| S/G/Y/R/B/O |
NT_033115 | AC034245 | 57782990 | 3 |   |   | AC021572 | 57553018 | 1 | 37746 | 0 | 2317 | 40063 |
| S/G/Y/R/B/O |
NT_033115 | AC034245 | 57782990 | 3 |   |   | AC023021 | 134676734 | 1 | 44018 | 0 | 0 | 44018 |
| S/G/Y/R/B/O |
NT_033115 | AC034245 | 57782990 | 3 |   |   | AC079469 | 134676734 | 2 | 123474 | 0 | 0 | 123474 |
| S/G/Y/R/B/O |
NT_033115 | AC008391 | 57834095 | 3 | chr5 | NT_033115 | AC022431 | 57981305 | 3 | 63947 | 0 | 0 | 63947 |
| S/G/Y/R/B/O |
NT_033115 | AC008391 | 57834095 | 3 | chr5 | NT_016779 | AC016618 | 13549684 | 1 | 65163 | 10181 | 17565 | 92909 |
| S/G/Y/R/B/O |
NT_033115 | AC008391 | 57834095 | 3 |   |   | AC016569 | 134676734 | 2 | 35844 | 0 | 0 | 35844 |
| S/G/Y/R/B/O |
NT_033115 | AC008391 | 57834095 | 3 |   |   | AC021572 | 13549684 | 1 | 120450 | 2244 | 2490 | 125184 |
| S/G/Y/R/B/O |
NT_033115 | AC022431 | 57981305 | 3 | chr5 | NT_033115 | AC008940 | 58090901 | 3 | 26844 | 0 | 0 | 26844 |
| S/G/Y/R/B/O |
NT_033115 | AC022431 | 57981305 | 3 | chr5 | NT_016779 | AC016618 | 13549684 | 1 | 34245 | 8584 | 1906 | 44735 |
| S/G/Y/R/B/O |
NT_033115 | AC022431 | 57981305 | 3 |   |   | AC021572 | 13549684 | 1 | 59444 | 4692 | 1185 | 65321 |
| S/G/Y/R/B/O |
NT_033115 | AC022431 | 57981305 | 3 |   |   | AC026744 | 134676734 | 2 | 74923 | 0 | 0 | 74923 |
| S/G/Y/R/B/O |
NT_033115 | AC008940 | 58090901 | 3 | chr5 | NT_033115 | AC008937 | 58196028 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033115 | AC008940 | 58090901 | 3 |   |   | AC026744 | 57981305 | 2 | 90036 | 0 | 1148 | 91184 |
| S/G/Y/R/B/O |
NT_033115 | AC008937 | 58196028 | 3 | chr5 | NT_033115 | AC016644 | 58355669 | 3 | 116468 | 0 | 0 | 116468 |
| S/G/Y/R/B/O |
NT_033115 | AC008937 | 58196028 | 3 |   |   | AC034165 | 58355669 | 1 | 53857 | 0 | 0 | 53857 |
| S/G/Y/R/B/O |
NT_033115 | AC016644 | 58355669 | 3 | chr5 | NT_033115 | AC114973 | 58396728 | 3 | 23542 | 0 | 0 | 23542 |
| S/G/Y/R/B/O |
NT_033115 | AC016644 | 58355669 | 3 |   |   | AC034165 | 58196028 | 1 | 71066 | 0 | 0 | 71066 |
| S/G/Y/R/B/O |
NT_033115 | AC114973 | 58396728 | 3 | chr5 | NT_033115 | AC034244 | 58467718 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033115 | AC114973 | 58396728 | 3 | chr5 | NT_033092 | AC025473 | 59330233 | 1 | 18341 | 0 | 2349 | 20690 |
| S/G/Y/R/B/O |
NT_033115 | AC114973 | 58396728 | 3 | chr5 | NT_033092 | AC073542 | 59332738 | 3 | 30442 | 0 | 0 | 30442 |
| S/G/Y/R/B/O |
NT_033115 | AC114973 | 58396728 | 3 |   |   | AC034165 | 59330233 | 1 | 93508 | 0 | 0 | 93508 |
| S/G/Y/R/B/O |
NT_033115 | AC034244 | 58467718 | 3 | chr5 | NT_033115 | AC113374 | 58646057 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033115 | AC034244 | 58467718 | 3 | chr5 | NT_033115 | AC008435 | 57504760 | 1 | 43899 | 1448 | 0 | 45347 |
| S/G/Y/R/B/O |
NT_033115 | AC034244 | 58467718 | 3 | chr5 | NT_033092 | AC025473 | 59330233 | 1 | 111726 | 2509 | 5535 | 119770 |
| S/G/Y/R/B/O |
NT_033115 | AC034244 | 58467718 | 3 | chr5 | NT_033092 | AC073542 | 59332738 | 3 | 127348 | 0 | 0 | 127348 |
| S/G/Y/R/B/O |
NT_033115 | AC034244 | 58467718 | 3 |   |   | AC034165 | 59330233 | 1 | 16478 | 0 | 0 | 16478 |
| S/G/Y/R/B/O |
NT_033115 | AC034244 | 58467718 | 3 |   |   | AC093203 | 59332738 | 2 | 101152 | 0 | 0 | 101152 |
| S/G/Y/R/B/O |
NT_033115 | AC113374 | 58646057 | 1 | chr5 | NT_033115 | AC106747 | 58761705 | 1 | 113943 | 0 | 0 | 113943 |
| S/G/Y/R/B/O |
NT_033115 | AC113374 | 58646057 | 1 | chr5 | NT_033115 | AC106822 | 58775216 | 3 | 20951 | 0 | 1062 | 22013 |
| S/G/Y/R/B/O |
NT_033115 | AC113374 | 58646057 | 1 | chr5 | NT_006665 | AC116606 | 59525542 | 3 | 88965 | 0 | 0 | 88965 |
| S/G/Y/R/B/O |
NT_033115 | AC113374 | 58646057 | 1 |   |   | AC007024 | 59332738 | 3 | 66741 | 0 | 1062 | 67803 |
| S/G/Y/R/B/O |
NT_033115 | AC113374 | 58646057 | 1 |   |   | AC011285 | 59332738 | 1 | 73222 | 0 | 0 | 73222 |
| S/G/Y/R/B/O |
NT_033115 | AC113374 | 58646057 | 1 |   |   | AC019266 | 59332738 | 2 | 19784 | 0 | 0 | 19784 |
| S/G/Y/R/B/O |
NT_033115 | AC106747 | 58761705 | 1 | chr5 | NT_033115 | AC106822 | 58775216 | 3 | 49381 | 0 | 14798 | 64179 |
| S/G/Y/R/B/O |
NT_033115 | AC106747 | 58761705 | 1 |   |   | AC011285 | 59525542 | 1 | 89547 | 0 | 0 | 89547 |
| S/G/Y/R/B/O |
NT_033115 | AC106822 | 58775216 | 3 | chr5 | NT_033115 | AC008780 | 58882773 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033115 | AC106822 | 58775216 | 3 | chr5 | NT_033115 | AC113374 | 58646057 | 1 | 20951 | 0 | 1062 | 22013 |
| S/G/Y/R/B/O |
NT_033115 | AC106822 | 58775216 | 3 |   |   | AC006142 | 58646057 | 3 | 68970 | 0 | 0 | 68970 |
| S/G/Y/R/B/O |
NT_033115 | AC106822 | 58775216 | 3 |   |   | AC007024 | 58646057 | 3 | 47192 | 0 | 0 | 47192 |
| S/G/Y/R/B/O |
NT_033115 | AC008780 | 58882773 | 3 | chr5 | NT_033115 | AC025470 | 59057053 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033115 | AC008780 | 58882773 | 3 |   |   | AC006142 | 58646057 | 3 | 82961 | 0 | 0 | 82961 |
| S/G/Y/R/B/O |
NT_033115 | AC008780 | 58882773 | 3 |   |   | AC092356 | 58646057 | 1 | 53628 | 10186 | 26312 | 90126 |
| S/G/Y/R/B/O |
NT_033115 | AC008780 | 58882773 | 3 |   |   | AC113400 | 58646057 | 2 | 72699 | 0 | 0 | 72699 |
| S/G/Y/R/B/O |
NT_033115 | AC025470 | 59057053 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033115 | AC025470 | 59057053 | 3 | chr5 | NT_033115 | AC008435 | 57504760 | 1 | 64856 | 0 | 0 | 64856 |
| S/G/Y/R/B/O |
NT_033115 | AC025470 | 59057053 | 3 |   |   | AC093219 | 57504760 | 1 | 45910 | 0 | 104428 | 150338 |
| S/G/Y/R/B/O |
NT_033115 | AC025470 | 59057053 | 3 |   |   | AC113400 | 57504760 | 2 | 111560 | 0 | 0 | 111560 |
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