Chromosome 5 - Clone Overlaps

Chromosome 5 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_007022

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_007022	AC008434	83819252	1	chr5	NT_007022	AC022223	83828534	1	11221	0	15104	26325
S/G/Y/R/B/O	NT_007022	AC008434	83819252	1	chr5	NT_007022	AC010270	85205365	2	60381	0	10215	70596
S/G/Y/R/B/O	NT_007022	AC008434	83819252	1	chr5	NT_006713	AC018764	80171121	3	28593	0	8838	37431
S/G/Y/R/B/O	NT_007022	AC008434	83819252	1			AC104467	83828534	1	26544	0	0	26544
S/G/Y/R/B/O	NT_007022	AC022223	83828534	1	chr5	NT_007022	AC008907	83840074	1	0	0	0	0
S/G/Y/R/B/O	NT_007022	AC022223	83828534	1	chr5	NT_007022	AC010270	85205365	2	33575	0	21550	55125
S/G/Y/R/B/O	NT_007022	AC022223	83828534	1			AC008557	83819252	2	20083	0	1674	21757
S/G/Y/R/B/O	NT_007022	AC022223	83828534	1			AC104467	55846604	1	42654	0	36769	79423
S/G/Y/R/B/O	NT_007022	AC008907	83840074	1	chr5	NT_007022	AC114969	83922843	1	0	0	0	0
S/G/Y/R/B/O	NT_007022	AC008907	83840074	1	chr5	NT_006654	AC008850	100483039	3	96982	0	19252	116234
S/G/Y/R/B/O	NT_007022	AC008907	83840074	1	chr5	NT_006654	AC008865	100614844	3	41757	0	19228	60985
S/G/Y/R/B/O	NT_007022	AC008907	83840074	1	chr5	NT_007022	AC008908	85929415	2	60787	2805	0	63592
S/G/Y/R/B/O	NT_007022	AC008907	83840074	1			AC022114	85929415	3	16766	0	0	16766
S/G/Y/R/B/O	NT_007022	AC114969	83922843	1	chr5	NT_007022	AC022931	83933422	1	100277	5447	36763	142487
S/G/Y/R/B/O	NT_007022	AC114969	83922843	1	chr5	NT_007022	AC023549	83960952	1	66775	7044	29983	103802
S/G/Y/R/B/O	NT_007022	AC114969	83922843	1	chr5	NT_007022	AC026726	87221613	3	19589	0	0	19589
S/G/Y/R/B/O	NT_007022	AC114969	83922843	1	chr5	NT_007022	AC106824	84050924	1	26780	0	4462	31242
S/G/Y/R/B/O	NT_007022	AC022931	83933422	1	chr5	NT_007022	AC023549	83960952	1	57269	5319	0	62588
S/G/Y/R/B/O	NT_007022	AC023549	83960952	1	chr5	NT_007022	AC106824	84050924	1	48451	0	4463	52914
S/G/Y/R/B/O	NT_007022	AC023549	83960952	1	chr5	NT_007022	AC010628	84093465	2	38617	4186	1365	44168
S/G/Y/R/B/O	NT_007022	AC023549	83960952	1	chr5	NT_007022	AC114969	83922843	1	66775	7044	29983	103802
S/G/Y/R/B/O	NT_007022	AC106824	84050924	1	chr5	NT_007022	AC010628	84093465	2	40411	9920	36198	86529
S/G/Y/R/B/O	NT_007022	AC106824	84050924	1	chr5	NT_007022	AC114969	83922843	1	26780	0	4462	31242
S/G/Y/R/B/O	NT_007022	AC010628	84093465	2	chr5	NT_007022	AC010598	84136468	3	14771	0	0	14771
S/G/Y/R/B/O	NT_007022	AC010628	84093465	2	chr5	NT_007022	AC023549	83960952	1	38617	4186	1365	44168
S/G/Y/R/B/O	NT_007022	AC010598	84136468	3	chr5	NT_007022	AC026698	84311019	3	32224	0	0	32224
S/G/Y/R/B/O	NT_007022	AC010598	84136468	3			AC005406	83922843	3	65731	0	0	65731
S/G/Y/R/B/O	NT_007022	AC026698	84311019	3	chr5	NT_007022	AC091861	84471507	3	23406	0	0	23406
S/G/Y/R/B/O	NT_007022	AC026698	84311019	3			AC005406	84050924	3	192086	0	0	192086
S/G/Y/R/B/O	NT_007022	AC091861	84471507	3	chr5	NT_007022	AC026782	84487342	3	10463	0	0	10463
S/G/Y/R/B/O	NT_007022	AC091861	84471507	3			AC005406	84471507	3	23350	0	0	23350
S/G/Y/R/B/O	NT_007022	AC026782	84487342	3	chr5	NT_007022	AC008885	84690900	3	9658	0	0	9658
S/G/Y/R/B/O	NT_007022	AC008885	84690900	3	chr5	NT_007022	AC108174	84809012	3	70604	0	0	70604
S/G/Y/R/B/O	NT_007022	AC008885	84690900	3			AC090073	84487342	1	23763	6076	10924	40763
S/G/Y/R/B/O	NT_007022	AC108174	84809012	3	chr5	NT_007022	AC027338	84900715	3	16043	0	0	16043
S/G/Y/R/B/O	NT_007022	AC108174	84809012	3			AC027327	84690900	2	12122	7338	9146	28606
S/G/Y/R/B/O	NT_007022	AC108174	84809012	3			AC090073	84900715	1	41082	17362	34563	93007
S/G/Y/R/B/O	NT_007022	AC027338	84900715	3	chr5	NT_007022	AC104118	85002454	3	23254	0	0	23254
S/G/Y/R/B/O	NT_007022	AC027338	84900715	3			AC010586	84900715	2	58132	2086	0	60218
S/G/Y/R/B/O	NT_007022	AC027338	84900715	3			AC027327	84900715	2	66024	11724	6983	84731
S/G/Y/R/B/O	NT_007022	AC027338	84900715	3			AC090073	84900715	1	54607	0	22465	77072
S/G/Y/R/B/O	NT_007022	AC104118	85002454	3	chr5	NT_007022	AC022416	85029172	3	23113	0	0	23113
S/G/Y/R/B/O	NT_007022	AC104118	85002454	3	chr5	NT_007022	AC099510	85154803	1	43772	970	0	44742
S/G/Y/R/B/O	NT_007022	AC104118	85002454	3			AC010586	84809012	2	48889	0	0	48889
S/G/Y/R/B/O	NT_007022	AC104118	85002454	3			AC090073	84900715	1	14612	0	14252	28864
S/G/Y/R/B/O	NT_007022	AC022416	85029172	3	chr5	NT_007022	AC094085	85146029	1	91942	0	0	91942
S/G/Y/R/B/O	NT_007022	AC022416	85029172	3	chr5	NT_007022	AC099510	85154803	1	80865	0	0	80865
S/G/Y/R/B/O	NT_007022	AC022416	85029172	3			AC010586	85154803	2	24443	0	0	24443
S/G/Y/R/B/O	NT_007022	AC094085	85146029	1	chr5	NT_007022	AC099510	85154803	1	36955	0	0	36955
S/G/Y/R/B/O	NT_007022	AC094085	85146029	1	chr5	NT_007022	AC034211	85208738	3	68708	0	0	68708
S/G/Y/R/B/O	NT_007022	AC094085	85146029	1			AC090073	85208738	1	12253	11761	23446	47460
S/G/Y/R/B/O	NT_007022	AC099510	85154803	1	chr5	NT_007022	AC010270	85205365	2	0	0	0	0
S/G/Y/R/B/O	NT_007022	AC099510	85154803	1	chr5	NT_007022	AC022416	85029172	3	80865	0	0	80865
S/G/Y/R/B/O	NT_007022	AC099510	85154803	1	chr5	NT_007022	AC104118	85002454	3	43772	970	0	44742
S/G/Y/R/B/O	NT_007022	AC099510	85154803	1			AC010586	85154803	2	46939	2086	2996	52021
S/G/Y/R/B/O	NT_007022	AC099510	85154803	1			AC027327	85029172	2	16491	5017	2326	23834
S/G/Y/R/B/O	NT_007022	AC099510	85154803	1			AC090073	84900715	1	21397	8517	39915	69829
S/G/Y/R/B/O	NT_007022	AC010270	85205365	2	chr5	NT_007022	AC034211	85208738	3	0	0	0	0
S/G/Y/R/B/O	NT_007022	AC010270	85205365	2	chr5	NT_007022	AC008434	83819252	1	60381	0	10215	70596
S/G/Y/R/B/O	NT_007022	AC010270	85205365	2	chr5	NT_007022	AC022223	83828534	1	33575	0	21550	55125
S/G/Y/R/B/O	NT_007022	AC010270	85205365	2	chr5	NT_007022	AC022493	86130722	3	30730	0	0	30730
S/G/Y/R/B/O	NT_007022	AC010270	85205365	2			AC008557	83819252	2	29803	0	0	29803
S/G/Y/R/B/O	NT_007022	AC010270	85205365	2			AC104467	86130722	1	132571	0	3140	135711
S/G/Y/R/B/O	NT_007022	AC034211	85208738	3	chr5	NT_007022	AC016568	85321640	3	31569	0	0	31569
S/G/Y/R/B/O	NT_007022	AC034211	85208738	3	chr5	NT_007022	AC094085	85146029	1	68708	0	0	68708
S/G/Y/R/B/O	NT_007022	AC034211	85208738	3			AC023134	85321640	3	57315	0	0	57315
S/G/Y/R/B/O	NT_007022	AC016568	85321640	3	chr5	NT_007022	AC026696	85510981	3	28396	0	0	28396
S/G/Y/R/B/O	NT_007022	AC016568	85321640	3			AC023134	85146029	3	146992	0	0	146992
S/G/Y/R/B/O	NT_007022	AC016568	85321640	3			AC025439	85146029	3	108646	0	0	108646
S/G/Y/R/B/O	NT_007022	AC026696	85510981	3	chr5	NT_007022	AC020921	85608391	3	50718	0	0	50718
S/G/Y/R/B/O	NT_007022	AC026696	85510981	3	chr5	NT_007022	AC008908	85929415	2	76878	0	0	76878
S/G/Y/R/B/O	NT_007022	AC026696	85510981	3			AC007554	85208738	1	66009	0	0	66009
S/G/Y/R/B/O	NT_007022	AC020921	85608391	3	chr5	NT_007022	AC020899	85658549	3	29406	0	0	29406
S/G/Y/R/B/O	NT_007022	AC020921	85608391	3	chr5	NT_007022	AC008908	85929415	2	58335	0	0	58335
S/G/Y/R/B/O	NT_007022	AC020921	85608391	3			AC007554	85608391	1	57327	2192	944	60463
S/G/Y/R/B/O	NT_007022	AC020899	85658549	3	chr5	NT_007022	AC093286	85793422	1	17941	0	51294	69235
S/G/Y/R/B/O	NT_007022	AC020899	85658549	3			AC007554	85510981	1	69096	0	944	70040
S/G/Y/R/B/O	NT_007022	AC093286	85793422	1	chr5	NT_007022	AC008908	85929415	2	0	0	0	0
S/G/Y/R/B/O	NT_007022	AC008908	85929415	2	chr5	NT_007022	AC022493	86130722	3	0	0	0	0
S/G/Y/R/B/O	NT_007022	AC008908	85929415	2	chr5	NT_006654	AC008850	100483039	3	100327	2806	0	103133
S/G/Y/R/B/O	NT_007022	AC008908	85929415	2	chr5	NT_006654	AC008865	100614844	3	37642	2803	0	40445
S/G/Y/R/B/O	NT_007022	AC008908	85929415	2	chr5	NT_007022	AC008907	83840074	1	60787	2805	0	63592
S/G/Y/R/B/O	NT_007022	AC008908	85929415	2	chr5	NT_007022	AC020921	85608391	3	58335	0	0	58335
S/G/Y/R/B/O	NT_007022	AC008908	85929415	2	chr5	NT_007022	AC026696	85510981	3	76878	0	0	76878
S/G/Y/R/B/O	NT_007022	AC008908	85929415	2			AC007554	79048052	1	26442	0	0	26442
S/G/Y/R/B/O	NT_007022	AC022493	86130722	3	chr5	NT_007022	AC008518	86283800	3	0	0	0	0
S/G/Y/R/B/O	NT_007022	AC022493	86130722	3	chr5	NT_007022	AC010270	85205365	2	30730	0	0	30730
S/G/Y/R/B/O	NT_007022	AC022493	86130722	3			AC008557	46079684	2	55519	0	0	55519
S/G/Y/R/B/O	NT_007022	AC022493	86130722	3			AC016565	85205365	3	69502	0	0	69502
S/G/Y/R/B/O	NT_007022	AC022493	86130722	3			AC104467	83828534	1	64955	0	0	64955
S/G/Y/R/B/O	NT_007022	AC008518	86283800	3	chr5	NT_007022	AC026427	86450822	1	94444	0	0	94444
S/G/Y/R/B/O	NT_007022	AC008518	86283800	3			AC016565	83828534	3	75998	0	0	75998
S/G/Y/R/B/O	NT_007022	AC008518	86283800	3			AC016684	83828534	1	75584	10958	22079	108621
S/G/Y/R/B/O	NT_007022	AC026427	86450822	1	chr5	NT_007022	AC020901	86532138	3	72284	0	0	72284
S/G/Y/R/B/O	NT_007022	AC026427	86450822	1			AC010248	86283800	3	29453	0	0	29453
S/G/Y/R/B/O	NT_007022	AC026427	86450822	1			AC016684	86283800	1	104692	11971	20408	137071
S/G/Y/R/B/O	NT_007022	AC020901	86532138	3	chr5	NT_007022	AC026436	86640395	3	14981	0	0	14981
S/G/Y/R/B/O	NT_007022	AC020901	86532138	3			AC016684	86532138	1	27225	0	10765	37990
S/G/Y/R/B/O	NT_007022	AC026436	86640395	3	chr5	NT_007022	AC008411	86726313	3	58065	0	0	58065
S/G/Y/R/B/O	NT_007022	AC008411	86726313	3	chr5	NT_007022	AC010600	86776445	2	5220	0	1375	6595
S/G/Y/R/B/O	NT_007022	AC010600	86776445	2	chr5	NT_007022	AC093207	86854009	1	61806	1689	0	63495
S/G/Y/R/B/O	NT_007022	AC010600	86776445	2	chr5	NT_007022	AC026419	86920852	2	26527	0	0	26527
S/G/Y/R/B/O	NT_007022	AC093207	86854009	1	chr5	NT_007022	AC026419	86920852	2	94645	0	0	94645
S/G/Y/R/B/O	NT_007022	AC093207	86854009	1	chr5	NT_007022	AC012205	87046500	1	28110	2469	0	30579
S/G/Y/R/B/O	NT_007022	AC093207	86854009	1	chr5	NT_007022	AC093273	87158183	1	59673	2911	4369	66953
S/G/Y/R/B/O	NT_007022	AC026419	86920852	2	chr5	NT_007022	AC016562	87023595	1	0	0	0	0
S/G/Y/R/B/O	NT_007022	AC026419	86920852	2	chr5	NT_007022	AC010600	86776445	2	26527	0	0	26527
S/G/Y/R/B/O	NT_007022	AC026419	86920852	2	chr5	NT_007022	AC093273	87158183	1	22555	0	0	22555
S/G/Y/R/B/O	NT_007022	AC016562	87023595	1	chr5	NT_007022	AC012205	87046500	1	145297	3828	8193	157318
S/G/Y/R/B/O	NT_007022	AC016562	87023595	1	chr5	NT_007022	AC026726	87221613	3	23842	0	0	23842
S/G/Y/R/B/O	NT_007022	AC016562	87023595	1	chr5	NT_007022	AC093273	87158183	1	66717	0	0	66717
S/G/Y/R/B/O	NT_007022	AC012205	87046500	1	chr5	NT_007022	AC093273	87158183	1	35826	0	1349	37175
S/G/Y/R/B/O	NT_007022	AC012205	87046500	1	chr5	NT_007022	AC026726	87221613	3	20598	2378	1377	24353
S/G/Y/R/B/O	NT_007022	AC012205	87046500	1	chr5	NT_007022	AC093207	86854009	1	28110	2469	0	30579
S/G/Y/R/B/O	NT_007022	AC093273	87158183	1	chr5	NT_007022	AC026726	87221613	3	0	0	0	0
S/G/Y/R/B/O	NT_007022	AC093273	87158183	1	chr5	NT_007022	AC016562	87023595	1	66717	0	0	66717
S/G/Y/R/B/O	NT_007022	AC093273	87158183	1	chr5	NT_007022	AC026419	86920852	2	22555	0	0	22555
S/G/Y/R/B/O	NT_007022	AC093273	87158183	1	chr5	NT_007022	AC093207	86854009	1	59673	2911	4369	66953
S/G/Y/R/B/O	NT_007022	AC026726	87221613	3
S/G/Y/R/B/O	NT_007022	AC026726	87221613	3	chr5	NT_007022	AC012205	87046500	1	20598	2378	1377	24353
S/G/Y/R/B/O	NT_007022	AC026726	87221613	3	chr5	NT_007022	AC016562	87023595	1	23842	0	0	23842
S/G/Y/R/B/O	NT_007022	AC026726	87221613	3	chr5	NT_007022	AC114969	83922843	1	19589	0	0	19589