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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_007993 | AF252825 | 28305707 | 1 | chr8 | NT_007993 | AC109329 | 28311689 | 2 | 93868 | 0 | 1131 | 94999 |
| S/G/Y/R/B/O |
NT_007993 | AF252825 | 28305707 | 1 | chr8 | NT_007993 | AC011204 | 28321819 | 2 | 41055 | 0 | 1130 | 42185 |
| S/G/Y/R/B/O |
NT_007993 | AC109329 | 28311689 | 2 | chr8 | NT_007993 | AC011204 | 28321819 | 2 | 59240 | 0 | 0 | 59240 |
| S/G/Y/R/B/O |
NT_007993 | AC109329 | 28311689 | 2 | chr8 | NT_007993 | AC026979 | 29009754 | 1 | 50391 | 0 | 1297 | 51688 |
| S/G/Y/R/B/O |
NT_007993 | AC109329 | 28311689 | 2 | chr8 | NT_007993 | AC090820 | 28877116 | 2 | 91218 | 0 | 0 | 91218 |
| S/G/Y/R/B/O |
NT_007993 | AC109329 | 28311689 | 2 |   |   | AF165140 | 28877116 | 2 | 28582 | 0 | 0 | 28582 |
| S/G/Y/R/B/O |
NT_007993 | AC011204 | 28321819 | 2 | chr8 | NT_007993 | AC102945 | 28477745 | 3 | 30206 | 0 | 0 | 30206 |
| S/G/Y/R/B/O |
NT_007993 | AC011204 | 28321819 | 2 | chr8 | NT_007993 | AF252825 | 28305707 | 1 | 41055 | 0 | 1130 | 42185 |
| S/G/Y/R/B/O |
NT_007993 | AC011204 | 28321819 | 2 |   |   | AF165140 | 28311689 | 2 | 114544 | 0 | 0 | 114544 |
| S/G/Y/R/B/O |
NT_007993 | AC102945 | 28477745 | 3 | chr8 | NT_007993 | AF215848 | 28575171 | 1 | 61156 | 1756 | 0 | 62912 |
| S/G/Y/R/B/O |
NT_007993 | AC102945 | 28477745 | 3 | chr8 | NT_007993 | AC103959 | 28581503 | 1 | 61103 | 0 | 2008 | 63111 |
| S/G/Y/R/B/O |
NT_007993 | AC102945 | 28477745 | 3 |   |   | AF252826 | 28575171 | 1 | 94701 | 0 | 7389 | 102090 |
| S/G/Y/R/B/O |
NT_007993 | AF215848 | 28575171 | 1 | chr8 | NT_007993 | AC103959 | 28581503 | 1 | 142032 | 1759 | 11712 | 155503 |
| S/G/Y/R/B/O |
NT_007993 | AF215848 | 28575171 | 1 | chr8 | NT_007993 | AC009314 | 29099680 | 3 | 55769 | 1669 | 9170 | 66608 |
| S/G/Y/R/B/O |
NT_007993 | AF215848 | 28575171 | 1 |   |   | AC084087 | 29099680 | 1 | 17779 | 0 | 0 | 17779 |
| S/G/Y/R/B/O |
NT_007993 | AF215848 | 28575171 | 1 |   |   | AC087624 | 29099680 | 1 | 37502 | 0 | 0 | 37502 |
| S/G/Y/R/B/O |
NT_007993 | AF215848 | 28575171 | 1 |   |   | AF228703 | 78349055 | 3 | 28582 | 0 | 0 | 28582 |
| S/G/Y/R/B/O |
NT_007993 | AF215848 | 28575171 | 1 |   |   | AF252826 | 78349055 | 1 | 50205 | 2684 | 7380 | 60269 |
| S/G/Y/R/B/O |
NT_007993 | AC103959 | 28581503 | 1 | chr8 | NT_007993 | AC090197 | 28598011 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007993 | AC103959 | 28581503 | 1 | chr8 | NT_007993 | AC009314 | 29099680 | 3 | 107686 | 0 | 1320 | 109006 |
| S/G/Y/R/B/O |
NT_007993 | AC103959 | 28581503 | 1 | chr8 | NT_007993 | AC102945 | 28477745 | 3 | 61103 | 0 | 2008 | 63111 |
| S/G/Y/R/B/O |
NT_007993 | AC103959 | 28581503 | 1 |   |   | AC087624 | 29099680 | 1 | 70364 | 0 | 1315 | 71679 |
| S/G/Y/R/B/O |
NT_007993 | AC103959 | 28581503 | 1 |   |   | AF228703 | 28575171 | 3 | 27104 | 0 | 0 | 27104 |
| S/G/Y/R/B/O |
NT_007993 | AC103959 | 28581503 | 1 |   |   | AF252826 | 28575171 | 1 | 50250 | 2682 | 7348 | 60280 |
| S/G/Y/R/B/O |
NT_007993 | AC090197 | 28598011 | 1 | chr8 | NT_007993 | AF279339 | 28692023 | 1 | 159796 | 3669 | 2976 | 166441 |
| S/G/Y/R/B/O |
NT_007993 | AF279339 | 28692023 | 1 | chr8 | NT_007993 | AF191252 | 28774491 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007993 | AF191252 | 28774491 | 1 | chr8 | NT_007993 | AC104561 | 28774499 | 1 | 80760 | 0 | 30225 | 110985 |
| S/G/Y/R/B/O |
NT_007993 | AF191252 | 28774491 | 1 | chr8 | NT_007993 | AC051642 | 30048207 | 1 | 15489 | 2486 | 0 | 17975 |
| S/G/Y/R/B/O |
NT_007993 | AF191252 | 28774491 | 1 | chr8 | NT_007993 | AF216674 | 30045414 | 1 | 32597 | 0 | 7486 | 40083 |
| S/G/Y/R/B/O |
NT_007993 | AC104561 | 28774499 | 1 | chr8 | NT_007993 | AC090820 | 28877116 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007993 | AC104561 | 28774499 | 1 | chr8 | NT_007993 | AC051642 | 30048207 | 1 | 17916 | 0 | 0 | 17916 |
| S/G/Y/R/B/O |
NT_007993 | AC104561 | 28774499 | 1 | chr8 | NT_007993 | AF216674 | 30045414 | 1 | 37646 | 0 | 2423 | 40069 |
| S/G/Y/R/B/O |
NT_007993 | AC090820 | 28877116 | 2 | chr8 | NT_007993 | AC026979 | 29009754 | 1 | 69239 | 0 | 28800 | 98039 |
| S/G/Y/R/B/O |
NT_007993 | AC090820 | 28877116 | 2 | chr8 | NT_007993 | AC109329 | 28311689 | 2 | 91218 | 0 | 0 | 91218 |
| S/G/Y/R/B/O |
NT_007993 | AC026979 | 29009754 | 1 | chr8 | NT_007993 | AC044849 | 29069390 | 1 | 27272 | 0 | 9433 | 36705 |
| S/G/Y/R/B/O |
NT_007993 | AC026979 | 29009754 | 1 | chr8 | NT_007993 | AC109329 | 28311689 | 2 | 50391 | 0 | 1297 | 51688 |
| S/G/Y/R/B/O |
NT_007993 | AC044849 | 29069390 | 1 | chr8 | NT_007993 | AC009314 | 29099680 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007993 | AC044849 | 29069390 | 1 | chr8 | NT_007993 | AC091165 | 30722537 | 3 | 63342 | 0 | 0 | 63342 |
| S/G/Y/R/B/O |
NT_007993 | AC044849 | 29069390 | 1 |   |   | AC017065 | 28311689 | 1 | 41521 | 2146 | 1216 | 44883 |
| S/G/Y/R/B/O |
NT_007993 | AC009314 | 29099680 | 3 | chr8 | NT_007993 | AC008066 | 29261468 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007993 | AC009314 | 29099680 | 3 | chr8 | NT_007993 | AC103959 | 28581503 | 1 | 107686 | 0 | 1320 | 109006 |
| S/G/Y/R/B/O |
NT_007993 | AC009314 | 29099680 | 3 | chr8 | NT_007993 | AF215848 | 28575171 | 1 | 55769 | 1669 | 9170 | 66608 |
| S/G/Y/R/B/O |
NT_007993 | AC009314 | 29099680 | 3 |   |   | AC084087 | 30722537 | 1 | 49303 | 0 | 1832 | 51135 |
| S/G/Y/R/B/O |
NT_007993 | AC009314 | 29099680 | 3 |   |   | AC087624 | 30722537 | 1 | 127552 | 3053 | 995 | 131600 |
| S/G/Y/R/B/O |
NT_007993 | AC009314 | 29099680 | 3 |   |   | AF228703 | 28575171 | 3 | 50566 | 0 | 0 | 50566 |
| S/G/Y/R/B/O |
NT_007993 | AC008066 | 29261468 | 3 | chr8 | NT_007993 | AC084736 | 29435615 | 3 | 44707 | 0 | 0 | 44707 |
| S/G/Y/R/B/O |
NT_007993 | AC008066 | 29261468 | 3 |   |   | AC084087 | 28575171 | 1 | 57737 | 0 | 0 | 57737 |
| S/G/Y/R/B/O |
NT_007993 | AC008066 | 29261468 | 3 |   |   | AC087624 | 29435615 | 1 | 42180 | 0 | 0 | 42180 |
| S/G/Y/R/B/O |
NT_007993 | AC008066 | 29261468 | 3 |   |   | AC090281 | 29435615 | 3 | 107109 | 0 | 0 | 107109 |
| S/G/Y/R/B/O |
NT_007993 | AC008066 | 29261468 | 3 |   |   | AF212833 | 29435615 | 1 | 69709 | 0 | 0 | 69709 |
| S/G/Y/R/B/O |
NT_007993 | AC084736 | 29435615 | 3 | chr8 | NT_007993 | AF181897 | 29570926 | 3 | 29239 | 0 | 0 | 29239 |
| S/G/Y/R/B/O |
NT_007993 | AC084736 | 29435615 | 3 | chr8 | NT_007993 | AC009563 | 29629128 | 1 | 72677 | 0 | 0 | 72677 |
| S/G/Y/R/B/O |
NT_007993 | AC084736 | 29435615 | 3 |   |   | AF181896 | 29629128 | 3 | 98715 | 0 | 0 | 98715 |
| S/G/Y/R/B/O |
NT_007993 | AF181897 | 29570926 | 3 | chr8 | NT_007993 | AC009563 | 29629128 | 1 | 87142 | 0 | 0 | 87142 |
| S/G/Y/R/B/O |
NT_007993 | AC009563 | 29629128 | 1 | chr8 | NT_007993 | AC104044 | 29655758 | 2 | 31125 | 0 | 0 | 31125 |
| S/G/Y/R/B/O |
NT_007993 | AC009563 | 29629128 | 1 | chr8 | NT_007993 | AC084736 | 29435615 | 3 | 72677 | 0 | 0 | 72677 |
| S/G/Y/R/B/O |
NT_007993 | AC009563 | 29629128 | 1 |   |   | AF181896 | 29655758 | 3 | 42210 | 0 | 0 | 42210 |
| S/G/Y/R/B/O |
NT_007993 | AC104044 | 29655758 | 2 | chr8 | NT_007993 | AC068672 | 29722433 | 2 | 33803 | 1557 | 0 | 35360 |
| S/G/Y/R/B/O |
NT_007993 | AC104044 | 29655758 | 2 |   |   | AC012139 | 29629128 | 1 | 23239 | 2942 | 0 | 26181 |
| S/G/Y/R/B/O |
NT_007993 | AC068672 | 29722433 | 2 | chr8 | NT_007993 | AC090816 | 29902183 | 1 | 66482 | 0 | 0 | 66482 |
| S/G/Y/R/B/O |
NT_007993 | AC068672 | 29722433 | 2 | chr8 | NT_007993 | AC083759 | 31160112 | 1 | 34003 | 1969 | 0 | 35972 |
| S/G/Y/R/B/O |
NT_007993 | AC068672 | 29722433 | 2 |   |   | AC012139 | 29722433 | 1 | 164264 | 0 | 0 | 164264 |
| S/G/Y/R/B/O |
NT_007993 | AC090816 | 29902183 | 1 | chr8 | NT_007993 | AF216674 | 30045414 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007993 | AC090816 | 29902183 | 1 | chr8 | NT_007993 | AC083759 | 31160112 | 1 | 77716 | 0 | 0 | 77716 |
| S/G/Y/R/B/O |
NT_007993 | AC090816 | 29902183 | 1 |   |   | AC012139 | 31753127 | 1 | 44904 | 1940 | 0 | 46844 |
| S/G/Y/R/B/O |
NT_007993 | AF216674 | 30045414 | 1 | chr8 | NT_007993 | AC051642 | 30048207 | 1 | 28567 | 4983 | 9348 | 42898 |
| S/G/Y/R/B/O |
NT_007993 | AF216674 | 30045414 | 1 | chr8 | NT_007993 | AC022597 | 30175490 | 1 | 19037 | 4983 | 1089 | 25109 |
| S/G/Y/R/B/O |
NT_007993 | AF216674 | 30045414 | 1 | chr8 | NT_007993 | AC104561 | 28774499 | 1 | 37646 | 0 | 2423 | 40069 |
| S/G/Y/R/B/O |
NT_007993 | AF216674 | 30045414 | 1 | chr8 | NT_007993 | AF191252 | 28774491 | 1 | 32597 | 0 | 7486 | 40083 |
| S/G/Y/R/B/O |
NT_007993 | AC051642 | 30048207 | 1 | chr8 | NT_007993 | AC022597 | 30175490 | 1 | 150975 | 0 | 0 | 150975 |
| S/G/Y/R/B/O |
NT_007993 | AC051642 | 30048207 | 1 | chr8 | NT_007993 | AC012574 | 30210839 | 3 | 11813 | 0 | 0 | 11813 |
| S/G/Y/R/B/O |
NT_007993 | AC051642 | 30048207 | 1 | chr8 | NT_007993 | AC104561 | 28774499 | 1 | 17916 | 0 | 0 | 17916 |
| S/G/Y/R/B/O |
NT_007993 | AC051642 | 30048207 | 1 | chr8 | NT_007993 | AF191252 | 28774491 | 1 | 15489 | 2486 | 0 | 17975 |
| S/G/Y/R/B/O |
NT_007993 | AC022597 | 30175490 | 1 | chr8 | NT_007993 | AC012574 | 30210839 | 3 | 41762 | 0 | 0 | 41762 |
| S/G/Y/R/B/O |
NT_007993 | AC022597 | 30175490 | 1 | chr8 | NT_007993 | AF216674 | 30045414 | 1 | 19037 | 4983 | 1089 | 25109 |
| S/G/Y/R/B/O |
NT_007993 | AC012574 | 30210839 | 3 | chr8 | NT_007993 | AC012119 | 30285323 | 3 | 6036 | 0 | 0 | 6036 |
| S/G/Y/R/B/O |
NT_007993 | AC012574 | 30210839 | 3 | chr8 | NT_007993 | AC051642 | 30048207 | 1 | 11813 | 0 | 0 | 11813 |
| S/G/Y/R/B/O |
NT_007993 | AC012119 | 30285323 | 3 | chr8 | NT_007993 | AC091194 | 30416109 | 2 | 24102 | 0 | 0 | 24102 |
| S/G/Y/R/B/O |
NT_007993 | AC012119 | 30285323 | 3 | chr8 | NT_007993 | AC044895 | 30446754 | 1 | 16681 | 4394 | 0 | 21075 |
| S/G/Y/R/B/O |
NT_007993 | AC012119 | 30285323 | 3 |   |   | AF242179 | 30416109 | 3 | 18205 | 0 | 0 | 18205 |
| S/G/Y/R/B/O |
NT_007993 | AC091194 | 30416109 | 2 | chr8 | NT_007993 | AC044895 | 30446754 | 1 | 141212 | 6509 | 3135 | 150856 |
| S/G/Y/R/B/O |
NT_007993 | AC091194 | 30416109 | 2 | chr8 | NT_007993 | AC023202 | 30617537 | 1 | 49574 | 0 | 0 | 49574 |
| S/G/Y/R/B/O |
NT_007993 | AC091194 | 30416109 | 2 |   |   | AC074394 | 30446754 | 1 | 134397 | 6153 | 56975 | 197525 |
| S/G/Y/R/B/O |
NT_007993 | AC044895 | 30446754 | 1 | chr8 | NT_007993 | AC023202 | 30617537 | 1 | 9952 | 0 | 0 | 9952 |
| S/G/Y/R/B/O |
NT_007993 | AC044895 | 30446754 | 1 | chr8 | NT_007993 | AC012119 | 30285323 | 3 | 16681 | 4394 | 0 | 21075 |
| S/G/Y/R/B/O |
NT_007993 | AC044895 | 30446754 | 1 |   |   | AC074394 | 30617537 | 1 | 48064 | 8048 | 23774 | 79886 |
| S/G/Y/R/B/O |
NT_007993 | AC023202 | 30617537 | 1 | chr8 | NT_007993 | AC091165 | 30722537 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007993 | AC023202 | 30617537 | 1 | chr8 | NT_007993 | AC044891 | 31017513 | 3 | 51747 | 0 | 0 | 51747 |
| S/G/Y/R/B/O |
NT_007993 | AC023202 | 30617537 | 1 | chr8 | NT_007993 | AC091194 | 30416109 | 2 | 49574 | 0 | 0 | 49574 |
| S/G/Y/R/B/O |
NT_007993 | AC023202 | 30617537 | 1 |   |   | AC074394 | 30446754 | 1 | 47154 | 0 | 0 | 47154 |
| S/G/Y/R/B/O |
NT_007993 | AC091165 | 30722537 | 3 | chr8 | NT_007993 | AC108926 | 30910993 | 3 | 12847 | 0 | 0 | 12847 |
| S/G/Y/R/B/O |
NT_007993 | AC091165 | 30722537 | 3 | chr8 | NT_007993 | AC044849 | 29069390 | 1 | 63342 | 0 | 0 | 63342 |
| S/G/Y/R/B/O |
NT_007993 | AC091165 | 30722537 | 3 |   |   | AC017065 | 30416109 | 1 | 151213 | 9339 | 1216 | 161768 |
| S/G/Y/R/B/O |
NT_007993 | AC108926 | 30910993 | 3 | chr8 | NT_007993 | AC044891 | 31017513 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007993 | AC044891 | 31017513 | 3 | chr8 | NT_007993 | AC083759 | 31160112 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_007993 | AC044891 | 31017513 | 3 | chr8 | NT_007993 | AC023202 | 30617537 | 1 | 51747 | 0 | 0 | 51747 |
| S/G/Y/R/B/O |
NT_007993 | AC044891 | 31017513 | 3 |   |   | AC011817 | 30722537 | 1 | 23665 | 18051 | 14717 | 56433 |
| S/G/Y/R/B/O |
NT_007993 | AC083759 | 31160112 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_007993 | AC083759 | 31160112 | 1 | chr8 | NT_033201 | AC004040 | 31753127 | 3 | 13984 | 0 | 0 | 13984 |
| S/G/Y/R/B/O |
NT_007993 | AC083759 | 31160112 | 1 | chr8 | NT_007993 | AC068672 | 29722433 | 2 | 34003 | 1969 | 0 | 35972 |
| S/G/Y/R/B/O |
NT_007993 | AC083759 | 31160112 | 1 | chr8 | NT_007993 | AC090816 | 29902183 | 1 | 77716 | 0 | 0 | 77716 |
| S/G/Y/R/B/O |
NT_007993 | AC083759 | 31160112 | 1 | chr8 | NT_033201 | AC104000 | 31812538 | 2 | 11743 | 0 | 0 | 11743 |
| S/G/Y/R/B/O |
NT_007993 | AC083759 | 31160112 | 1 |   |   | AC012139 | 31753127 | 1 | 33994 | 1945 | 0 | 35939 |
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