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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008209 | AC025599 | 73820819 | 3 | chr8 | NT_008209 | AC016240 | 73979149 | 2 | 10541 | 0 | 0 | 10541 |
| S/G/Y/R/B/O |
NT_008209 | AC025599 | 73820819 | 3 | chr8 | NT_008209 | AF261720 | 75431682 | 1 | 30161 | 0 | 6534 | 36695 |
| S/G/Y/R/B/O |
NT_008209 | AC025599 | 73820819 | 3 |   |   | AC068995 | 73979149 | 1 | 48949 | 0 | 28401 | 77350 |
| S/G/Y/R/B/O |
NT_008209 | AC016240 | 73979149 | 2 | chr8 | NT_008209 | AC103952 | 74086000 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008209 | AC016240 | 73979149 | 2 | chr8 | NT_008209 | AF261720 | 75431682 | 1 | 68471 | 0 | 6534 | 75005 |
| S/G/Y/R/B/O |
NT_008209 | AC016240 | 73979149 | 2 |   |   | AC068995 | 73820819 | 1 | 74680 | 0 | 25761 | 100441 |
| S/G/Y/R/B/O |
NT_008209 | AC016240 | 73979149 | 2 |   |   | AC087769 | 73820819 | 1 | 144541 | 0 | 0 | 144541 |
| S/G/Y/R/B/O |
NT_008209 | AC103952 | 74086000 | 3 | chr8 | NT_008209 | AF110324 | 74212706 | 3 | 10981 | 0 | 0 | 10981 |
| S/G/Y/R/B/O |
NT_008209 | AC103952 | 74086000 | 3 |   |   | AF303735 | 74212706 | 1 | 137426 | 0 | 0 | 137426 |
| S/G/Y/R/B/O |
NT_008209 | AF110324 | 74212706 | 3 | chr8 | NT_008209 | AC087792 | 74296162 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008209 | AF110324 | 74212706 | 3 |   |   | AF188027 | 74086000 | 2 | 21329 | 0 | 0 | 21329 |
| S/G/Y/R/B/O |
NT_008209 | AC087792 | 74296162 | 3 | chr8 | NT_008209 | AC087627 | 74397610 | 1 | 51278 | 0 | 0 | 51278 |
| S/G/Y/R/B/O |
NT_008209 | AC087792 | 74296162 | 3 |   |   | AC026288 | 74086000 | 1 | 47388 | 0 | 1343 | 48731 |
| S/G/Y/R/B/O |
NT_008209 | AC087792 | 74296162 | 3 |   |   | AF188027 | 57350567 | 2 | 101142 | 0 | 0 | 101142 |
| S/G/Y/R/B/O |
NT_008209 | AC087792 | 74296162 | 3 |   |   | AF228729 | 57350567 | 1 | 11802 | 0 | 83791 | 95593 |
| S/G/Y/R/B/O |
NT_008209 | AC087627 | 74397610 | 1 | chr8 | NT_008209 | AC009713 | 74403928 | 1 | 111958 | 0 | 0 | 111958 |
| S/G/Y/R/B/O |
NT_008209 | AC087627 | 74397610 | 1 | chr8 | NT_008209 | AC087672 | 74421493 | 2 | 82236 | 0 | 0 | 82236 |
| S/G/Y/R/B/O |
NT_008209 | AC087627 | 74397610 | 1 | chr8 | NT_008209 | AC090528 | 74568806 | 1 | 57841 | 0 | 1577 | 59418 |
| S/G/Y/R/B/O |
NT_008209 | AC087627 | 74397610 | 1 |   |   | AC009672 | 57350567 | 1 | 47136 | 7092 | 44791 | 99019 |
| S/G/Y/R/B/O |
NT_008209 | AC087627 | 74397610 | 1 |   |   | AC026288 | 74403928 | 1 | 110586 | 15521 | 15589 | 141696 |
| S/G/Y/R/B/O |
NT_008209 | AC087627 | 74397610 | 1 |   |   | AF188027 | 57350567 | 2 | 80657 | 0 | 0 | 80657 |
| S/G/Y/R/B/O |
NT_008209 | AC087627 | 74397610 | 1 |   |   | AF228729 | 57350567 | 1 | 11766 | 0 | 31511 | 43277 |
| S/G/Y/R/B/O |
NT_008209 | AC009713 | 74403928 | 1 | chr8 | NT_008209 | AC087672 | 74421493 | 2 | 153610 | 0 | 0 | 153610 |
| S/G/Y/R/B/O |
NT_008209 | AC009713 | 74403928 | 1 | chr8 | NT_008209 | AC022868 | 74572837 | 1 | 50911 | 0 | 705 | 51616 |
| S/G/Y/R/B/O |
NT_008209 | AC009713 | 74403928 | 1 | chr8 | NT_008209 | AC090528 | 74568806 | 1 | 97478 | 0 | 1126 | 98604 |
| S/G/Y/R/B/O |
NT_008209 | AC009713 | 74403928 | 1 |   |   | AC009672 | 57350567 | 1 | 74598 | 10215 | 52099 | 136912 |
| S/G/Y/R/B/O |
NT_008209 | AC009713 | 74403928 | 1 |   |   | AC026288 | 74572837 | 1 | 47805 | 16539 | 11538 | 75882 |
| S/G/Y/R/B/O |
NT_008209 | AC009713 | 74403928 | 1 |   |   | AF188027 | 74568806 | 2 | 23137 | 0 | 0 | 23137 |
| S/G/Y/R/B/O |
NT_008209 | AC087672 | 74421493 | 2 | chr8 | NT_008209 | AC090528 | 74568806 | 1 | 130221 | 0 | 1134 | 131355 |
| S/G/Y/R/B/O |
NT_008209 | AC087672 | 74421493 | 2 | chr8 | NT_008209 | AC022868 | 74572837 | 1 | 36815 | 0 | 703 | 37518 |
| S/G/Y/R/B/O |
NT_008209 | AC087672 | 74421493 | 2 | chr8 | NT_008209 | AC087627 | 74397610 | 1 | 82236 | 0 | 0 | 82236 |
| S/G/Y/R/B/O |
NT_008209 | AC087672 | 74421493 | 2 |   |   | AC009672 | 74568806 | 1 | 52008 | 3706 | 54794 | 110508 |
| S/G/Y/R/B/O |
NT_008209 | AC087672 | 74421493 | 2 |   |   | AC026288 | 74572837 | 1 | 59363 | 13891 | 14232 | 87486 |
| S/G/Y/R/B/O |
NT_008209 | AC090528 | 74568806 | 1 | chr8 | NT_008209 | AC022868 | 74572837 | 1 | 28926 | 0 | 0 | 28926 |
| S/G/Y/R/B/O |
NT_008209 | AC090528 | 74568806 | 1 | chr8 | NT_008209 | AC009713 | 74403928 | 1 | 97478 | 0 | 1126 | 98604 |
| S/G/Y/R/B/O |
NT_008209 | AC090528 | 74568806 | 1 | chr8 | NT_008209 | AC087627 | 74397610 | 1 | 57841 | 0 | 1577 | 59418 |
| S/G/Y/R/B/O |
NT_008209 | AC090528 | 74568806 | 1 |   |   | AC009672 | 74568806 | 1 | 45680 | 8071 | 49061 | 102812 |
| S/G/Y/R/B/O |
NT_008209 | AC090528 | 74568806 | 1 |   |   | AC026288 | 74572837 | 1 | 48490 | 11523 | 14998 | 75011 |
| S/G/Y/R/B/O |
NT_008209 | AC022868 | 74572837 | 1 | chr8 | NT_008209 | AC020670 | 74623373 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008209 | AC022868 | 74572837 | 1 | chr8 | NT_008209 | AC009713 | 74403928 | 1 | 50911 | 0 | 705 | 51616 |
| S/G/Y/R/B/O |
NT_008209 | AC022868 | 74572837 | 1 | chr8 | NT_008209 | AC022826 | 75262422 | 3 | 28850 | 0 | 0 | 28850 |
| S/G/Y/R/B/O |
NT_008209 | AC022868 | 74572837 | 1 | chr8 | NT_008209 | AC087672 | 74421493 | 2 | 36815 | 0 | 703 | 37518 |
| S/G/Y/R/B/O |
NT_008209 | AC022868 | 74572837 | 1 |   |   | AC009672 | 74421493 | 1 | 10222 | 1603 | 4925 | 16750 |
| S/G/Y/R/B/O |
NT_008209 | AC020670 | 74623373 | 1 | chr8 | NT_008209 | AC008598 | 74698577 | 3 | 53809 | 0 | 26957 | 80766 |
| S/G/Y/R/B/O |
NT_008209 | AC020670 | 74623373 | 1 | chr8 | NT_008209 | AC111149 | 74818066 | 2 | 51709 | 0 | 0 | 51709 |
| S/G/Y/R/B/O |
NT_008209 | AC020670 | 74623373 | 1 | chr8 | NT_008209 | AF286885 | 74800884 | 1 | 46276 | 0 | 0 | 46276 |
| S/G/Y/R/B/O |
NT_008209 | AC008598 | 74698577 | 3 | chr8 | NT_008209 | AF286885 | 74800884 | 1 | 49479 | 0 | 0 | 49479 |
| S/G/Y/R/B/O |
NT_008209 | AF286885 | 74800884 | 1 | chr8 | NT_008209 | AC111149 | 74818066 | 2 | 73169 | 0 | 0 | 73169 |
| S/G/Y/R/B/O |
NT_008209 | AF286885 | 74800884 | 1 | chr8 | NT_008209 | AC020670 | 74623373 | 1 | 46276 | 0 | 0 | 46276 |
| S/G/Y/R/B/O |
NT_008209 | AC111149 | 74818066 | 2 | chr8 | NT_008209 | AC018620 | 74829655 | 2 | 79232 | 0 | 0 | 79232 |
| S/G/Y/R/B/O |
NT_008209 | AC111149 | 74818066 | 2 | chr8 | NT_008209 | AC020670 | 74623373 | 1 | 51709 | 0 | 0 | 51709 |
| S/G/Y/R/B/O |
NT_008209 | AC111149 | 74818066 | 2 |   |   | AC021897 | 74623373 | 1 | 78817 | 0 | 0 | 78817 |
| S/G/Y/R/B/O |
NT_008209 | AC018620 | 74829655 | 2 | chr8 | NT_008209 | AC100784 | 75018124 | 3 | 19582 | 0 | 0 | 19582 |
| S/G/Y/R/B/O |
NT_008209 | AC018620 | 74829655 | 2 |   |   | AC021897 | 74800884 | 1 | 165342 | 0 | 0 | 165342 |
| S/G/Y/R/B/O |
NT_008209 | AC100784 | 75018124 | 3 | chr8 | NT_008209 | AC027018 | 75172331 | 3 | 91227 | 0 | 0 | 91227 |
| S/G/Y/R/B/O |
NT_008209 | AC100784 | 75018124 | 3 |   |   | AC021897 | 74829655 | 1 | 19582 | 0 | 0 | 19582 |
| S/G/Y/R/B/O |
NT_008209 | AC027018 | 75172331 | 3 | chr8 | NT_008209 | AC022826 | 75262422 | 3 | 63218 | 0 | 0 | 63218 |
| S/G/Y/R/B/O |
NT_008209 | AC022826 | 75262422 | 3 | chr8 | NT_008209 | AF261720 | 75431682 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008209 | AC022826 | 75262422 | 3 | chr8 | NT_008209 | AC022868 | 74572837 | 1 | 28850 | 0 | 0 | 28850 |
| S/G/Y/R/B/O |
NT_008209 | AF261720 | 75431682 | 1 | chr8 | NT_008209 | AC036214 | 75532917 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008209 | AF261720 | 75431682 | 1 | chr8 | NT_008209 | AC016240 | 73979149 | 2 | 68471 | 0 | 6534 | 75005 |
| S/G/Y/R/B/O |
NT_008209 | AF261720 | 75431682 | 1 | chr8 | NT_008209 | AC025599 | 73820819 | 3 | 30161 | 0 | 6534 | 36695 |
| S/G/Y/R/B/O |
NT_008209 | AF261720 | 75431682 | 1 |   |   | AC068995 | 73820819 | 1 | 91360 | 827 | 25281 | 117468 |
| S/G/Y/R/B/O |
NT_008209 | AF261720 | 75431682 | 1 |   |   | AC087769 | 73820819 | 1 | 88006 | 0 | 0 | 88006 |
| S/G/Y/R/B/O |
NT_008209 | AC036214 | 75532917 | 3 | chr8 | NT_008209 | AC018952 | 75693462 | 3 | 132850 | 0 | 0 | 132850 |
| S/G/Y/R/B/O |
NT_008209 | AC036214 | 75532917 | 3 |   |   | AC087769 | 75693462 | 1 | 26673 | 0 | 0 | 26673 |
| S/G/Y/R/B/O |
NT_008209 | AC018952 | 75693462 | 3 | chr8 | NT_008209 | AC009686 | 75741104 | 1 | 22002 | 0 | 0 | 22002 |
| S/G/Y/R/B/O |
NT_008209 | AC009686 | 75741104 | 1 |   |   |   |   |   |   |   |   |   |
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