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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008227 | AC015573 | 2875944 | 1 | chr8 | NT_008227 | AC087692 | 2882067 | 1 | 100843 | 19859 | 13698 | 134400 |
| S/G/Y/R/B/O |
NT_008227 | AC015573 | 2875944 | 1 | chr8 | NT_008227 | AC009193 | 3076133 | 1 | 46062 | 22607 | 10871 | 79540 |
| S/G/Y/R/B/O |
NT_008227 | AC015573 | 2875944 | 1 | chr8 | NT_008227 | AC016259 | 3058245 | 1 | 66382 | 20022 | 10910 | 97314 |
| S/G/Y/R/B/O |
NT_008227 | AC015573 | 2875944 | 1 | chr8 | NT_008227 | AC026991 | 3097104 | 3 | 31897 | 13083 | 16005 | 60985 |
| S/G/Y/R/B/O |
NT_008227 | AC015573 | 2875944 | 1 |   |   | AC016892 | 3058245 | 1 | 12254 | 6226 | 2605 | 21085 |
| S/G/Y/R/B/O |
NT_008227 | AC087692 | 2882067 | 1 | chr8 | NT_008227 | AC021523 | 2887946 | 2 | 32693 | 0 | 0 | 32693 |
| S/G/Y/R/B/O |
NT_008227 | AC087692 | 2882067 | 1 | chr8 | NT_008227 | AC009193 | 3076133 | 1 | 136277 | 0 | 423 | 136700 |
| S/G/Y/R/B/O |
NT_008227 | AC087692 | 2882067 | 1 | chr8 | NT_008227 | AC016259 | 3058245 | 1 | 160478 | 0 | 0 | 160478 |
| S/G/Y/R/B/O |
NT_008227 | AC087692 | 2882067 | 1 | chr8 | NT_008227 | AC026991 | 3097104 | 3 | 90498 | 0 | 0 | 90498 |
| S/G/Y/R/B/O |
NT_008227 | AC087692 | 2882067 | 1 |   |   | AC016892 | 3058245 | 1 | 31233 | 0 | 0 | 31233 |
| S/G/Y/R/B/O |
NT_008227 | AC021523 | 2887946 | 2 | chr8 | NT_008227 | AC016259 | 3058245 | 1 | 50261 | 0 | 0 | 50261 |
| S/G/Y/R/B/O |
NT_008227 | AC021523 | 2887946 | 2 | chr8 | NT_008227 | AC009193 | 3076133 | 1 | 19117 | 0 | 422 | 19539 |
| S/G/Y/R/B/O |
NT_008227 | AC016259 | 3058245 | 1 | chr8 | NT_008227 | AC009193 | 3076133 | 1 | 126327 | 0 | 423 | 126750 |
| S/G/Y/R/B/O |
NT_008227 | AC016259 | 3058245 | 1 | chr8 | NT_008227 | AC015573 | 2875944 | 1 | 66382 | 20022 | 10910 | 97314 |
| S/G/Y/R/B/O |
NT_008227 | AC016259 | 3058245 | 1 | chr8 | NT_008227 | AC026991 | 3097104 | 3 | 91527 | 0 | 0 | 91527 |
| S/G/Y/R/B/O |
NT_008227 | AC016259 | 3058245 | 1 | chr8 | NT_008227 | AC087692 | 2882067 | 1 | 160478 | 0 | 0 | 160478 |
| S/G/Y/R/B/O |
NT_008227 | AC009193 | 3076133 | 1 | chr8 | NT_008227 | AC026991 | 3097104 | 3 | 85347 | 0 | 0 | 85347 |
| S/G/Y/R/B/O |
NT_008227 | AC009193 | 3076133 | 1 | chr8 | NT_008227 | AC015573 | 2875944 | 1 | 46062 | 22607 | 10871 | 79540 |
| S/G/Y/R/B/O |
NT_008227 | AC009193 | 3076133 | 1 | chr8 | NT_008227 | AC021523 | 2887946 | 2 | 19117 | 0 | 422 | 19539 |
| S/G/Y/R/B/O |
NT_008227 | AC009193 | 3076133 | 1 | chr8 | NT_008227 | AC087692 | 2882067 | 1 | 136277 | 0 | 423 | 136700 |
| S/G/Y/R/B/O |
NT_008227 | AC026991 | 3097104 | 3 | chr8 | NT_008227 | AC087367 | 3266300 | 3 | 59463 | 0 | 0 | 59463 |
| S/G/Y/R/B/O |
NT_008227 | AC026991 | 3097104 | 3 | chr8 | NT_008227 | AC015573 | 2875944 | 1 | 31897 | 13083 | 16005 | 60985 |
| S/G/Y/R/B/O |
NT_008227 | AC026991 | 3097104 | 3 | chr8 | NT_008227 | AC016259 | 3058245 | 1 | 91527 | 0 | 0 | 91527 |
| S/G/Y/R/B/O |
NT_008227 | AC026991 | 3097104 | 3 | chr8 | NT_008227 | AC087692 | 2882067 | 1 | 90498 | 0 | 0 | 90498 |
| S/G/Y/R/B/O |
NT_008227 | AC026991 | 3097104 | 3 |   |   | AC016892 | 3058245 | 1 | 40945 | 0 | 0 | 40945 |
| S/G/Y/R/B/O |
NT_008227 | AC087367 | 3266300 | 3 | chr8 | NT_008227 | AC022910 | 3349872 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008227 | AC087367 | 3266300 | 3 |   |   | AC016892 | 2882067 | 1 | 133357 | 0 | 0 | 133357 |
| S/G/Y/R/B/O |
NT_008227 | AC087367 | 3266300 | 3 |   |   | AC026292 | 2882067 | 1 | 133109 | 0 | 0 | 133109 |
| S/G/Y/R/B/O |
NT_008227 | AC022910 | 3349872 | 3 | chr8 | NT_008227 | AF307159 | 3509649 | 1 | 75899 | 0 | 18257 | 94156 |
| S/G/Y/R/B/O |
NT_008227 | AC022910 | 3349872 | 3 | chr8 | NT_008227 | AC022846 | 3536833 | 1 | 44885 | 0 | 0 | 44885 |
| S/G/Y/R/B/O |
NT_008227 | AC022910 | 3349872 | 3 | chr8 | NT_008227 | AC090199 | 3520984 | 1 | 84264 | 0 | 21597 | 105861 |
| S/G/Y/R/B/O |
NT_008227 | AF307159 | 3509649 | 1 | chr8 | NT_008227 | AC090199 | 3520984 | 1 | 103288 | 2728 | 8753 | 114769 |
| S/G/Y/R/B/O |
NT_008227 | AF307159 | 3509649 | 1 | chr8 | NT_008227 | AC022846 | 3536833 | 1 | 96310 | 2756 | 0 | 99066 |
| S/G/Y/R/B/O |
NT_008227 | AF307159 | 3509649 | 1 | chr8 | NT_008227 | AC084093 | 3590779 | 1 | 28650 | 0 | 0 | 28650 |
| S/G/Y/R/B/O |
NT_008227 | AF307159 | 3509649 | 1 |   |   | AC113147 | 3520984 | 2 | 19331 | 0 | 0 | 19331 |
| S/G/Y/R/B/O |
NT_008227 | AC090199 | 3520984 | 1 | chr8 | NT_008227 | AC022846 | 3536833 | 1 | 80762 | 0 | 12628 | 93390 |
| S/G/Y/R/B/O |
NT_008227 | AC090199 | 3520984 | 1 | chr8 | NT_008227 | AC022910 | 3349872 | 3 | 84264 | 0 | 21597 | 105861 |
| S/G/Y/R/B/O |
NT_008227 | AC090199 | 3520984 | 1 | chr8 | NT_008227 | AC084093 | 3590779 | 1 | 44147 | 0 | 478 | 44625 |
| S/G/Y/R/B/O |
NT_008227 | AC022846 | 3536833 | 1 | chr8 | NT_008227 | AC084093 | 3590779 | 1 | 83388 | 0 | 0 | 83388 |
| S/G/Y/R/B/O |
NT_008227 | AC022846 | 3536833 | 1 | chr8 | NT_008227 | AC022910 | 3349872 | 3 | 44885 | 0 | 0 | 44885 |
| S/G/Y/R/B/O |
NT_008227 | AC022846 | 3536833 | 1 | chr8 | NT_008227 | AF307159 | 3509649 | 1 | 96310 | 2756 | 0 | 99066 |
| S/G/Y/R/B/O |
NT_008227 | AC022846 | 3536833 | 1 |   |   | AC113147 | 3520984 | 2 | 43973 | 0 | 31269 | 75242 |
| S/G/Y/R/B/O |
NT_008227 | AC084093 | 3590779 | 1 | chr8 | NT_008227 | AF127019 | 3728398 | 3 | 44361 | 0 | 0 | 44361 |
| S/G/Y/R/B/O |
NT_008227 | AC084093 | 3590779 | 1 | chr8 | NT_008227 | AC090199 | 3520984 | 1 | 44147 | 0 | 478 | 44625 |
| S/G/Y/R/B/O |
NT_008227 | AC084093 | 3590779 | 1 | chr8 | NT_008227 | AF307159 | 3509649 | 1 | 28650 | 0 | 0 | 28650 |
| S/G/Y/R/B/O |
NT_008227 | AC084093 | 3590779 | 1 |   |   | AC113147 | 3520984 | 2 | 71997 | 0 | 0 | 71997 |
| S/G/Y/R/B/O |
NT_008227 | AF127019 | 3728398 | 3 | chr8 | NT_008227 | AC084222 | 3757757 | 3 | 108372 | 0 | 0 | 108372 |
| S/G/Y/R/B/O |
NT_008227 | AF127019 | 3728398 | 3 | chr8 | NT_008227 | AC009707 | 3915435 | 3 | 79215 | 0 | 0 | 79215 |
| S/G/Y/R/B/O |
NT_008227 | AF127019 | 3728398 | 3 | chr3 | NT_022449 | AC069502 | 170583241 | 1 | 60424 | 7170 | 21332 | 88926 |
| S/G/Y/R/B/O |
NT_008227 | AF127019 | 3728398 | 3 |   |   | AC023306 | 3915435 | 3 | 138755 | 0 | 0 | 138755 |
| S/G/Y/R/B/O |
NT_008227 | AF127019 | 3728398 | 3 |   |   | AC113147 | 3757757 | 2 | 118964 | 0 | 0 | 118964 |
| S/G/Y/R/B/O |
NT_008227 | AC084222 | 3757757 | 3 | chr8 | NT_008227 | AC009707 | 3915435 | 3 | 128427 | 0 | 0 | 128427 |
| S/G/Y/R/B/O |
NT_008227 | AC084222 | 3757757 | 3 | chr3 | NT_022449 | AC069502 | 170583241 | 1 | 89227 | 12679 | 10329 | 112235 |
| S/G/Y/R/B/O |
NT_008227 | AC084222 | 3757757 | 3 |   |   | AC023306 | 3915435 | 3 | 121823 | 0 | 0 | 121823 |
| S/G/Y/R/B/O |
NT_008227 | AC084222 | 3757757 | 3 |   |   | AF289077 | 3728398 | 1 | 79400 | 0 | 0 | 79400 |
| S/G/Y/R/B/O |
NT_008227 | AC009707 | 3915435 | 3 | chr8 | NT_008227 | AC009428 | 3963197 | 3 | 31578 | 0 | 0 | 31578 |
| S/G/Y/R/B/O |
NT_008227 | AC009707 | 3915435 | 3 | chr3 | NT_022449 | AC069502 | 170583241 | 1 | 70675 | 9743 | 6652 | 87070 |
| S/G/Y/R/B/O |
NT_008227 | AC009707 | 3915435 | 3 | chr8 | NT_008227 | AF127019 | 3728398 | 3 | 79215 | 0 | 0 | 79215 |
| S/G/Y/R/B/O |
NT_008227 | AC009707 | 3915435 | 3 |   |   | AC023306 | 3963197 | 3 | 92826 | 0 | 0 | 92826 |
| S/G/Y/R/B/O |
NT_008227 | AC009707 | 3915435 | 3 |   |   | AC113147 | 3757757 | 2 | 26216 | 0 | 0 | 26216 |
| S/G/Y/R/B/O |
NT_008227 | AC009707 | 3915435 | 3 |   |   | AF289077 | 3728398 | 1 | 144259 | 0 | 0 | 144259 |
| S/G/Y/R/B/O |
NT_008227 | AC009428 | 3963197 | 3 | chr8 | NT_008227 | AC027251 | 4098578 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008227 | AC009428 | 3963197 | 3 |   |   | AC068416 | 3915435 | 2 | 98239 | 0 | 0 | 98239 |
| S/G/Y/R/B/O |
NT_008227 | AC027251 | 4098578 | 3 | chr8 | NT_008227 | AC012530 | 4218657 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008227 | AC027251 | 4098578 | 3 |   |   | AC068416 | 3915435 | 2 | 85600 | 0 | 0 | 85600 |
| S/G/Y/R/B/O |
NT_008227 | AC012530 | 4218657 | 1 | chr8 | NT_008227 | AC010941 | 4240046 | 2 | 142588 | 0 | 12012 | 154600 |
| S/G/Y/R/B/O |
NT_008227 | AC012530 | 4218657 | 1 | chr8 | NT_008227 | AC090875 | 4306283 | 2 | 71417 | 0 | 0 | 71417 |
| S/G/Y/R/B/O |
NT_008227 | AC012530 | 4218657 | 1 |   |   | AC073477 | 4240046 | 1 | 27058 | 5953 | 9474 | 42485 |
| S/G/Y/R/B/O |
NT_008227 | AC010941 | 4240046 | 2 | chr8 | NT_008227 | AC090875 | 4306283 | 2 | 99601 | 0 | 0 | 99601 |
| S/G/Y/R/B/O |
NT_008227 | AC010941 | 4240046 | 2 |   |   | AC073477 | 4218657 | 1 | 39207 | 5957 | 34360 | 79524 |
| S/G/Y/R/B/O |
NT_008227 | AC090875 | 4306283 | 2 | chr8 | NT_008227 | AC022068 | 4471788 | 3 | 12100 | 0 | 0 | 12100 |
| S/G/Y/R/B/O |
NT_008227 | AC090875 | 4306283 | 2 | chr8 | NT_008227 | AC012530 | 4218657 | 1 | 71417 | 0 | 0 | 71417 |
| S/G/Y/R/B/O |
NT_008227 | AC090875 | 4306283 | 2 |   |   | AC073477 | 4471788 | 1 | 99266 | 10669 | 23834 | 133769 |
| S/G/Y/R/B/O |
NT_008227 | AC090875 | 4306283 | 2 |   |   | AC084705 | 4471788 | 1 | 32834 | 0 | 0 | 32834 |
| S/G/Y/R/B/O |
NT_008227 | AC022068 | 4471788 | 3 | chr8 | NT_008227 | AC012543 | 4661654 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008227 | AC022068 | 4471788 | 3 |   |   | AC020986 | 4471788 | 2 | 49400 | 0 | 0 | 49400 |
| S/G/Y/R/B/O |
NT_008227 | AC022068 | 4471788 | 3 |   |   | AC084705 | 4471788 | 1 | 156243 | 0 | 0 | 156243 |
| S/G/Y/R/B/O |
NT_008227 | AC012543 | 4661654 | 2 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008227 | AC012543 | 4661654 | 2 |   |   | AC020986 | 4306283 | 2 | 128747 | 0 | 0 | 128747 |
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