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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_028251 | AC107904 | 138806511 | 2 | chr8 | NT_028251 | AC110053 | 138839957 | 2 | 113963 | 0 | 0 | 113963 |
| S/G/Y/R/B/O |
NT_028251 | AC107904 | 138806511 | 2 | chr8 | NT_028251 | AC105213 | 139214826 | 2 | 69368 | 0 | 0 | 69368 |
| S/G/Y/R/B/O |
NT_028251 | AC110053 | 138839957 | 2 | chr8 | NT_028251 | AC046195 | 138867915 | 3 | 40607 | 0 | 0 | 40607 |
| S/G/Y/R/B/O |
NT_028251 | AC046195 | 138867915 | 3 | chr8 | NT_028251 | AC079201 | 138997886 | 1 | 55605 | 4679 | 1192 | 61476 |
| S/G/Y/R/B/O |
NT_028251 | AC046195 | 138867915 | 3 | chr8 | NT_028251 | AC079015 | 139003324 | 1 | 14959 | 0 | 0 | 14959 |
| S/G/Y/R/B/O |
NT_028251 | AC079201 | 138997886 | 1 | chr8 | NT_028251 | AC079015 | 139003324 | 1 | 95900 | 11691 | 4882 | 112473 |
| S/G/Y/R/B/O |
NT_028251 | AC079015 | 139003324 | 1 | chr8 | NT_028251 | AC105213 | 139214826 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028251 | AC079015 | 139003324 | 1 | chr8 | NT_028251 | AC046195 | 138867915 | 3 | 14959 | 0 | 0 | 14959 |
| S/G/Y/R/B/O |
NT_028251 | AC105213 | 139214826 | 2 | chr8 | NT_028251 | AC022681 | 139317476 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028251 | AC105213 | 139214826 | 2 | chr8 | NT_028251 | AC091160 | 141617011 | 1 | 37923 | 0 | 0 | 37923 |
| S/G/Y/R/B/O |
NT_028251 | AC105213 | 139214826 | 2 | chr8 | NT_028251 | AC107904 | 138806511 | 2 | 69368 | 0 | 0 | 69368 |
| S/G/Y/R/B/O |
NT_028251 | AC022681 | 139317476 | 3 | chr8 | NT_028251 | AF207067 | 139537134 | 3 | 29663 | 0 | 0 | 29663 |
| S/G/Y/R/B/O |
NT_028251 | AC022681 | 139317476 | 3 |   |   | AC107460 | 138806511 | 2 | 23560 | 0 | 0 | 23560 |
| S/G/Y/R/B/O |
NT_028251 | AF207067 | 139537134 | 3 | chr8 | NT_028251 | AC019342 | 139631731 | 3 | 32290 | 0 | 0 | 32290 |
| S/G/Y/R/B/O |
NT_028251 | AF207067 | 139537134 | 3 |   |   | AC107460 | 139317476 | 2 | 105054 | 2211 | 0 | 107265 |
| S/G/Y/R/B/O |
NT_028251 | AC019342 | 139631731 | 3 | chr8 | NT_028251 | AC040914 | 139679022 | 2 | 2000 | 0 | 0 | 2000 |
| S/G/Y/R/B/O |
NT_028251 | AC019342 | 139631731 | 3 |   |   | AC107460 | 139679022 | 2 | 60504 | 0 | 0 | 60504 |
| S/G/Y/R/B/O |
NT_028251 | AC040914 | 139679022 | 2 | chr8 | NT_028251 | AC104371 | 139860089 | 3 | 76124 | 0 | 0 | 76124 |
| S/G/Y/R/B/O |
NT_028251 | AC104371 | 139860089 | 3 | chr8 | NT_028251 | AC105008 | 139953999 | 2 | 77045 | 0 | 0 | 77045 |
| S/G/Y/R/B/O |
NT_028251 | AC105008 | 139953999 | 2 | chr8 | NT_028251 | AC104952 | 140049492 | 2 | 33467 | 0 | 0 | 33467 |
| S/G/Y/R/B/O |
NT_028251 | AC104952 | 140049492 | 2 | chr8 | NT_028251 | AF215841 | 140161449 | 3 | 43054 | 0 | 0 | 43054 |
| S/G/Y/R/B/O |
NT_028251 | AC104952 | 140049492 | 2 |   |   | AC103955 | 111182 | 2 | 43085 | 0 | 0 | 43085 |
| S/G/Y/R/B/O |
NT_028251 | AF215841 | 140161449 | 3 | chr8 | NT_028251 | AC079098 | 140272819 | 3 | 14822 | 0 | 0 | 14822 |
| S/G/Y/R/B/O |
NT_028251 | AF215841 | 140161449 | 3 |   |   | AC017062 | 140161449 | 1 | 47526 | 0 | 19450 | 66976 |
| S/G/Y/R/B/O |
NT_028251 | AF215841 | 140161449 | 3 |   |   | AC103955 | 111182 | 2 | 111254 | 0 | 0 | 111254 |
| S/G/Y/R/B/O |
NT_028251 | AC079098 | 140272819 | 3 | chr8 | NT_028251 | AC023781 | 140416077 | 3 | 7084 | 0 | 0 | 7084 |
| S/G/Y/R/B/O |
NT_028251 | AC079098 | 140272819 | 3 |   |   | AC017062 | 140049492 | 1 | 55577 | 2985 | 67433 | 125995 |
| S/G/Y/R/B/O |
NT_028251 | AC079098 | 140272819 | 3 |   |   | AC103955 | 111182 | 2 | 14838 | 0 | 0 | 14838 |
| S/G/Y/R/B/O |
NT_028251 | AC023781 | 140416077 | 3 | chr8 | NT_028251 | AC025056 | 140556600 | 2 | 49459 | 0 | 0 | 49459 |
| S/G/Y/R/B/O |
NT_028251 | AC025056 | 140556600 | 2 | chr8 | NT_028251 | AC013546 | 140673363 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028251 | AC013546 | 140673363 | 2 | chr8 | NT_028251 | AC012410 | 140790303 | 3 | 40124 | 0 | 0 | 40124 |
| S/G/Y/R/B/O |
NT_028251 | AC013546 | 140673363 | 2 | chr8 | NT_028251 | AC090737 | 141241594 | 1 | 51195 | 0 | 0 | 51195 |
| S/G/Y/R/B/O |
NT_028251 | AC013546 | 140673363 | 2 |   |   | AC025621 | 140790303 | 1 | 25633 | 0 | 0 | 25633 |
| S/G/Y/R/B/O |
NT_028251 | AC013546 | 140673363 | 2 |   |   | AC027747 | 140790303 | 1 | 90513 | 0 | 0 | 90513 |
| S/G/Y/R/B/O |
NT_028251 | AC012410 | 140790303 | 3 | chr8 | NT_028251 | AC021621 | 141011018 | 3 | 13146 | 0 | 0 | 13146 |
| S/G/Y/R/B/O |
NT_028251 | AC012410 | 140790303 | 3 | chr8 | NT_028251 | AC090737 | 141241594 | 1 | 160717 | 0 | 0 | 160717 |
| S/G/Y/R/B/O |
NT_028251 | AC012410 | 140790303 | 3 |   |   | AC013646 | 140673363 | 3 | 32378 | 0 | 0 | 32378 |
| S/G/Y/R/B/O |
NT_028251 | AC012410 | 140790303 | 3 |   |   | AC013707 | 140673363 | 1 | 138076 | 0 | 2187 | 140263 |
| S/G/Y/R/B/O |
NT_028251 | AC012410 | 140790303 | 3 |   |   | AC016080 | 140673363 | 2 | 176613 | 0 | 0 | 176613 |
| S/G/Y/R/B/O |
NT_028251 | AC012410 | 140790303 | 3 |   |   | AC024359 | 141011018 | 1 | 132388 | 0 | 0 | 132388 |
| S/G/Y/R/B/O |
NT_028251 | AC012410 | 140790303 | 3 |   |   | AC025621 | 141011018 | 1 | 133692 | 4840 | 0 | 138532 |
| S/G/Y/R/B/O |
NT_028251 | AC012410 | 140790303 | 3 |   |   | AC027747 | 141011018 | 1 | 114938 | 0 | 0 | 114938 |
| S/G/Y/R/B/O |
NT_028251 | AC021621 | 141011018 | 3 | chr8 | NT_028251 | AC026261 | 141183986 | 1 | 96009 | 0 | 0 | 96009 |
| S/G/Y/R/B/O |
NT_028251 | AC021621 | 141011018 | 3 | chr8 | NT_028251 | AC068684 | 141243176 | 1 | 70235 | 0 | 0 | 70235 |
| S/G/Y/R/B/O |
NT_028251 | AC021621 | 141011018 | 3 |   |   | AC021301 | 140790303 | 3 | 140764 | 0 | 0 | 140764 |
| S/G/Y/R/B/O |
NT_028251 | AC026261 | 141183986 | 1 | chr8 | NT_028251 | AC090737 | 141241594 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028251 | AC026261 | 141183986 | 1 | chr8 | NT_028251 | AC068684 | 141243176 | 1 | 167402 | 0 | 0 | 167402 |
| S/G/Y/R/B/O |
NT_028251 | AC090737 | 141241594 | 1 | chr8 | NT_028251 | AC068684 | 141243176 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028251 | AC090737 | 141241594 | 1 | chr8 | NT_028251 | AC012410 | 140790303 | 3 | 160717 | 0 | 0 | 160717 |
| S/G/Y/R/B/O |
NT_028251 | AC090737 | 141241594 | 1 | chr8 | NT_028251 | AC013546 | 140673363 | 2 | 51195 | 0 | 0 | 51195 |
| S/G/Y/R/B/O |
NT_028251 | AC090737 | 141241594 | 1 |   |   | AC013707 | 140673363 | 1 | 87022 | 0 | 955 | 87977 |
| S/G/Y/R/B/O |
NT_028251 | AC090737 | 141241594 | 1 |   |   | AC016080 | 140673363 | 2 | 151027 | 0 | 0 | 151027 |
| S/G/Y/R/B/O |
NT_028251 | AC090737 | 141241594 | 1 |   |   | AC024359 | 140673363 | 1 | 81823 | 0 | 0 | 81823 |
| S/G/Y/R/B/O |
NT_028251 | AC090737 | 141241594 | 1 |   |   | AC025621 | 140673363 | 1 | 68022 | 2891 | 0 | 70913 |
| S/G/Y/R/B/O |
NT_028251 | AC090737 | 141241594 | 1 |   |   | AC027747 | 140673363 | 1 | 81919 | 0 | 0 | 81919 |
| S/G/Y/R/B/O |
NT_028251 | AC068684 | 141243176 | 1 | chr8 | NT_028251 | AC093328 | 141283812 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028251 | AC068684 | 141243176 | 1 | chr8 | NT_028251 | AC021621 | 141011018 | 3 | 70235 | 0 | 0 | 70235 |
| S/G/Y/R/B/O |
NT_028251 | AC068684 | 141243176 | 1 | chr8 | NT_028251 | AC026261 | 141183986 | 1 | 167402 | 0 | 0 | 167402 |
| S/G/Y/R/B/O |
NT_028251 | AC093328 | 141283812 | 3 | chr8 | NT_028251 | AC093566 | 141447452 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028251 | AC093328 | 141283812 | 3 |   |   | AF119709 | 141183986 | 3 | 26135 | 0 | 0 | 26135 |
| S/G/Y/R/B/O |
NT_028251 | AC093328 | 141283812 | 3 |   |   | AF215844 | 141183986 | 1 | 78528 | 0 | 9415 | 87943 |
| S/G/Y/R/B/O |
NT_028251 | AC093566 | 141447452 | 2 | chr8 | NT_028251 | AC091160 | 141617011 | 1 | 6745 | 0 | 0 | 6745 |
| S/G/Y/R/B/O |
NT_028251 | AC093566 | 141447452 | 2 | chr8 | NT_028251 | AF217246 | 141700945 | 1 | 129974 | 1496 | 25201 | 156671 |
| S/G/Y/R/B/O |
NT_028251 | AC093566 | 141447452 | 2 |   |   | AF119709 | 141617011 | 3 | 25354 | 0 | 0 | 25354 |
| S/G/Y/R/B/O |
NT_028251 | AC091160 | 141617011 | 1 | chr8 | NT_028251 | AF217246 | 141700945 | 1 | 5730 | 0 | 797 | 6527 |
| S/G/Y/R/B/O |
NT_028251 | AC091160 | 141617011 | 1 | chr8 | NT_028251 | AC105213 | 139214826 | 2 | 37923 | 0 | 0 | 37923 |
| S/G/Y/R/B/O |
NT_028251 | AF217246 | 141700945 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_028251 | AF217246 | 141700945 | 1 | chr8 | NT_028251 | AC093566 | 141447452 | 2 | 129974 | 1496 | 25201 | 156671 |
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