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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008161 | AC084085 | 12155074 | 1 | chr8 | NT_008161 | AC069321 | 12178090 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008161 | AC084085 | 12155074 | 1 | chr8 | NT_008161 | AC015641 | 12557646 | 2 | 149684 | 0 | 0 | 149684 |
| S/G/Y/R/B/O |
NT_008161 | AC084085 | 12155074 | 1 | chr8 | NT_008161 | AC068920 | 12407711 | 1 | 66459 | 0 | 50903 | 117362 |
| S/G/Y/R/B/O |
NT_008161 | AC084085 | 12155074 | 1 | chr8 | NT_008161 | AF188029 | 12351433 | 2 | 19622 | 0 | 0 | 19622 |
| S/G/Y/R/B/O |
NT_008161 | AC084085 | 12155074 | 1 |   |   | AC068412 | 26237652 | 1 | 156454 | 0 | 1422 | 157876 |
| S/G/Y/R/B/O |
NT_008161 | AC069321 | 12178090 | 1 | chr8 | NT_008161 | AC090133 | 12179983 | 1 | 135055 | 13447 | 21365 | 169867 |
| S/G/Y/R/B/O |
NT_008161 | AC069321 | 12178090 | 1 | chr8 | NT_008161 | AF188029 | 12351433 | 2 | 23723 | 9074 | 6336 | 39133 |
| S/G/Y/R/B/O |
NT_008161 | AC090133 | 12179983 | 1 | chr8 | NT_008161 | AF188029 | 12351433 | 2 | 42946 | 0 | 6619 | 49565 |
| S/G/Y/R/B/O |
NT_008161 | AF188029 | 12351433 | 2 | chr8 | NT_008161 | AC068920 | 12407711 | 1 | 42776 | 5850 | 17998 | 66624 |
| S/G/Y/R/B/O |
NT_008161 | AF188029 | 12351433 | 2 | chr8 | NT_008161 | AC069321 | 12178090 | 1 | 23723 | 9074 | 6336 | 39133 |
| S/G/Y/R/B/O |
NT_008161 | AF188029 | 12351433 | 2 | chr8 | NT_008161 | AC084085 | 12155074 | 1 | 19622 | 0 | 0 | 19622 |
| S/G/Y/R/B/O |
NT_008161 | AF188029 | 12351433 | 2 |   |   | AC068412 | 26237652 | 1 | 26470 | 0 | 0 | 26470 |
| S/G/Y/R/B/O |
NT_008161 | AC068920 | 12407711 | 1 | chr8 | NT_008161 | AC015641 | 12557646 | 2 | 52365 | 0 | 12796 | 65161 |
| S/G/Y/R/B/O |
NT_008161 | AC068920 | 12407711 | 1 | chr8 | NT_008161 | AC084085 | 12155074 | 1 | 66459 | 0 | 50903 | 117362 |
| S/G/Y/R/B/O |
NT_008161 | AC068920 | 12407711 | 1 |   |   | AC068412 | 26237652 | 1 | 76105 | 0 | 13966 | 90071 |
| S/G/Y/R/B/O |
NT_008161 | AC015641 | 12557646 | 2 | chr8 | NT_008161 | AC013749 | 12671716 | 1 | 0 | 0 | 303 | 303 |
| S/G/Y/R/B/O |
NT_008161 | AC015641 | 12557646 | 2 | chr8 | NT_008161 | AC084085 | 12155074 | 1 | 149684 | 0 | 0 | 149684 |
| S/G/Y/R/B/O |
NT_008161 | AC015641 | 12557646 | 2 | chr8 | NT_008161 | AC106845 | 12718926 | 2 | 16700 | 0 | 563 | 17263 |
| S/G/Y/R/B/O |
NT_008161 | AC015641 | 12557646 | 2 |   |   | AC068412 | 12671716 | 1 | 78941 | 0 | 0 | 78941 |
| S/G/Y/R/B/O |
NT_008161 | AC013749 | 12671716 | 1 | chr8 | NT_008161 | AC106845 | 12718926 | 2 | 158138 | 0 | 567 | 158705 |
| S/G/Y/R/B/O |
NT_008161 | AC013749 | 12671716 | 1 | chr8 | NT_008161 | AC011047 | 12737994 | 1 | 111351 | 13177 | 9556 | 134084 |
| S/G/Y/R/B/O |
NT_008161 | AC013749 | 12671716 | 1 | chr8 | NT_008161 | AC074186 | 12737024 | 1 | 68729 | 0 | 26440 | 95169 |
| S/G/Y/R/B/O |
NT_008161 | AC106845 | 12718926 | 2 | chr8 | NT_008161 | AC074186 | 12737024 | 1 | 64890 | 0 | 34481 | 99371 |
| S/G/Y/R/B/O |
NT_008161 | AC106845 | 12718926 | 2 | chr8 | NT_008161 | AC011047 | 12737994 | 1 | 130814 | 13177 | 9556 | 153547 |
| S/G/Y/R/B/O |
NT_008161 | AC106845 | 12718926 | 2 | chr8 | NT_008161 | AC015641 | 12557646 | 2 | 16700 | 0 | 563 | 17263 |
| S/G/Y/R/B/O |
NT_008161 | AC074186 | 12737024 | 1 | chr8 | NT_008161 | AC011047 | 12737994 | 1 | 40418 | 1713 | 23003 | 65134 |
| S/G/Y/R/B/O |
NT_008161 | AC074186 | 12737024 | 1 | chr8 | NT_008161 | AC013749 | 12671716 | 1 | 68729 | 0 | 26440 | 95169 |
| S/G/Y/R/B/O |
NT_008161 | AC074186 | 12737024 | 1 | chr8 | NT_008161 | AC019270 | 12850924 | 2 | 14997 | 1945 | 38367 | 55309 |
| S/G/Y/R/B/O |
NT_008161 | AC011047 | 12737994 | 1 | chr8 | NT_008161 | AC019270 | 12850924 | 2 | 13223 | 0 | 0 | 13223 |
| S/G/Y/R/B/O |
NT_008161 | AC011047 | 12737994 | 1 | chr8 | NT_008161 | AC013749 | 12671716 | 1 | 111351 | 13177 | 9556 | 134084 |
| S/G/Y/R/B/O |
NT_008161 | AC011047 | 12737994 | 1 | chr8 | NT_008161 | AC106845 | 12718926 | 2 | 130814 | 13177 | 9556 | 153547 |
| S/G/Y/R/B/O |
NT_008161 | AC019270 | 12850924 | 2 | chr8 | NT_008161 | AC022844 | 13005881 | 3 | 86176 | 0 | 0 | 86176 |
| S/G/Y/R/B/O |
NT_008161 | AC019270 | 12850924 | 2 | chr8 | NT_008161 | AC074186 | 12737024 | 1 | 14997 | 1945 | 38367 | 55309 |
| S/G/Y/R/B/O |
NT_008161 | AC022844 | 13005881 | 3 | chr8 | NT_008161 | AC022832 | 13091181 | 3 | 20917 | 0 | 0 | 20917 |
| S/G/Y/R/B/O |
NT_008161 | AC022832 | 13091181 | 3 | chr8 | NT_008161 | AC022880 | 13236499 | 3 | 14506 | 0 | 0 | 14506 |
| S/G/Y/R/B/O |
NT_008161 | AC022880 | 13236499 | 3 | chr8 | NT_008161 | AC022690 | 13388299 | 3 | 29227 | 0 | 0 | 29227 |
| S/G/Y/R/B/O |
NT_008161 | AC022690 | 13388299 | 3 | chr8 | NT_008161 | AC023538 | 13537386 | 3 | 35825 | 0 | 0 | 35825 |
| S/G/Y/R/B/O |
NT_008161 | AC022690 | 13388299 | 3 | chr8 | NT_008161 | AC023072 | 13910065 | 1 | 35383 | 4360 | 1016 | 40759 |
| S/G/Y/R/B/O |
NT_008161 | AC022690 | 13388299 | 3 | chr8 | NT_008161 | AC068788 | 13913808 | 1 | 23043 | 0 | 34165 | 57208 |
| S/G/Y/R/B/O |
NT_008161 | AC023538 | 13537386 | 3 | chr8 | NT_008161 | AC022039 | 13691078 | 3 | 82732 | 0 | 0 | 82732 |
| S/G/Y/R/B/O |
NT_008161 | AC023538 | 13537386 | 3 | chr8 | NT_008161 | AC023072 | 13910065 | 1 | 110703 | 15540 | 7779 | 134022 |
| S/G/Y/R/B/O |
NT_008161 | AC023538 | 13537386 | 3 | chr8 | NT_008161 | AC068788 | 13913808 | 1 | 13391 | 0 | 24541 | 37932 |
| S/G/Y/R/B/O |
NT_008161 | AC023538 | 13537386 | 3 |   |   | AC106727 | 13913808 | 3 | 153692 | 0 | 0 | 153692 |
| S/G/Y/R/B/O |
NT_008161 | AC022039 | 13691078 | 3 | chr8 | NT_008161 | AC009898 | 13785161 | 2 | 43733 | 0 | 0 | 43733 |
| S/G/Y/R/B/O |
NT_008161 | AC022039 | 13691078 | 3 | chr8 | NT_008161 | AC023072 | 13910065 | 1 | 53424 | 12143 | 3626 | 69193 |
| S/G/Y/R/B/O |
NT_008161 | AC022039 | 13691078 | 3 |   |   | AC022700 | 23355837 | 2 | 57526 | 0 | 0 | 57526 |
| S/G/Y/R/B/O |
NT_008161 | AC022039 | 13691078 | 3 |   |   | AC106727 | 76318776 | 3 | 82727 | 0 | 0 | 82727 |
| S/G/Y/R/B/O |
NT_008161 | AC009898 | 13785161 | 2 | chr8 | NT_008161 | AC023072 | 13910065 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008161 | AC009898 | 13785161 | 2 |   |   | AC022700 | 13691078 | 2 | 10651 | 0 | 0 | 10651 |
| S/G/Y/R/B/O |
NT_008161 | AC023072 | 13910065 | 1 | chr8 | NT_008161 | AC068788 | 13913808 | 1 | 69325 | 13426 | 5173 | 87924 |
| S/G/Y/R/B/O |
NT_008161 | AC023072 | 13910065 | 1 | chr8 | NT_008161 | AC022039 | 13691078 | 3 | 53424 | 12143 | 3626 | 69193 |
| S/G/Y/R/B/O |
NT_008161 | AC023072 | 13910065 | 1 | chr8 | NT_008161 | AC022690 | 13388299 | 3 | 35383 | 4360 | 1016 | 40759 |
| S/G/Y/R/B/O |
NT_008161 | AC023072 | 13910065 | 1 | chr8 | NT_008161 | AC023538 | 13537386 | 3 | 110703 | 15540 | 7779 | 134022 |
| S/G/Y/R/B/O |
NT_008161 | AC023072 | 13910065 | 1 |   |   | AC106727 | 13913808 | 3 | 86961 | 15540 | 7779 | 110280 |
| S/G/Y/R/B/O |
NT_008161 | AC068788 | 13913808 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008161 | AC068788 | 13913808 | 1 | chr8 | NT_008161 | AC022690 | 13388299 | 3 | 23043 | 0 | 34165 | 57208 |
| S/G/Y/R/B/O |
NT_008161 | AC068788 | 13913808 | 1 | chr8 | NT_008161 | AC023538 | 13537386 | 3 | 13391 | 0 | 24541 | 37932 |
| S/G/Y/R/B/O |
NT_008161 | AC068788 | 13913808 | 1 |   |   | AC106727 | 13537386 | 3 | 50290 | 0 | 0 | 50290 |
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