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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_031818 | AF205589 | 147594429 | 1 | chr8 | NT_031818 | AC022505 | 147600604 | 1 | 22178 | 0 | 0 | 22178 |
| S/G/Y/R/B/O |
NT_031818 | AC022505 | 147600604 | 1 | chr8 | NT_031818 | AC084125 | 147647273 | 1 | 42806 | 7241 | 22877 | 72924 |
| S/G/Y/R/B/O |
NT_031818 | AC084125 | 147647273 | 1 | chr8 | NT_031818 | AC110280 | 147743897 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031818 | AC110280 | 147743897 | 2 | chr8 | NT_031818 | AF186192 | 148000032 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031818 | AF186192 | 148000032 | 3 | chr8 | NT_031818 | AF235103 | 148068326 | 3 | 60663 | 0 | 0 | 60663 |
| S/G/Y/R/B/O |
NT_031818 | AF186192 | 148000032 | 3 | chr8 | NT_031818 | AC084225 | 148415579 | 1 | 43427 | 0 | 0 | 43427 |
| S/G/Y/R/B/O |
NT_031818 | AF186192 | 148000032 | 3 |   |   | AC083959 | 138839957 | 1 | 19633 | 1708 | 0 | 21341 |
| S/G/Y/R/B/O |
NT_031818 | AF186192 | 148000032 | 3 |   |   | AC084856 | 148415579 | 1 | 15600 | 2285 | 0 | 17885 |
| S/G/Y/R/B/O |
NT_031818 | AF186192 | 148000032 | 3 |   |   | AC087733 | 148415579 | 1 | 108380 | 0 | 0 | 108380 |
| S/G/Y/R/B/O |
NT_031818 | AF186192 | 148000032 | 3 |   |   | AC090775 | 148415579 | 1 | 38177 | 0 | 0 | 38177 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 | chr8 | NT_031818 | AC087720 | 148412575 | 1 | 81607 | 0 | 0 | 81607 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 | chr8 | NT_031818 | AC084225 | 148415579 | 1 | 182424 | 0 | 0 | 182424 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 | chr8 | NT_031818 | AF176681 | 148420775 | 1 | 78434 | 0 | 10096 | 88530 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 | chr8 | NT_031818 | AF216665 | 148416785 | 1 | 60903 | 1851 | 0 | 62754 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 | chr8 | NT_031818 | AF216668 | 148413333 | 1 | 90330 | 0 | 1015 | 91345 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 | chr8 | NT_031818 | AF216670 | 148424497 | 1 | 90701 | 1960 | 1411 | 94072 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 |   |   | AC083959 | 148068326 | 1 | 159741 | 1709 | 1748 | 163198 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 |   |   | AC084856 | 148415579 | 1 | 165626 | 3980 | 0 | 169606 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 |   |   | AC087733 | 148412575 | 1 | 60684 | 0 | 0 | 60684 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 |   |   | AC087815 | 148412575 | 3 | 77726 | 0 | 0 | 77726 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 |   |   | AC090775 | 148412575 | 1 | 25929 | 0 | 0 | 25929 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 |   |   | AC105449 | 148412575 | 2 | 157971 | 0 | 0 | 157971 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 |   |   | AF146367 | 33139937 | 3 | 68421 | 0 | 0 | 68421 |
| S/G/Y/R/B/O |
NT_031818 | AF235103 | 148068326 | 3 |   |   | AF186193 | 148000032 | 1 | 34243 | 1820 | 6559 | 42622 |
| S/G/Y/R/B/O |
NT_031818 | AC087720 | 148412575 | 1 | chr8 | NT_031818 | AF216668 | 148413333 | 1 | 82743 | 0 | 0 | 82743 |
| S/G/Y/R/B/O |
NT_031818 | AC087720 | 148412575 | 1 | chr8 | NT_031818 | AF176681 | 148420775 | 1 | 77372 | 0 | 7922 | 85294 |
| S/G/Y/R/B/O |
NT_031818 | AC087720 | 148412575 | 1 | chr8 | NT_031818 | AF216670 | 148424497 | 1 | 28353 | 0 | 0 | 28353 |
| S/G/Y/R/B/O |
NT_031818 | AC087720 | 148412575 | 1 |   |   | AC084856 | 87041316 | 1 | 21275 | 0 | 0 | 21275 |
| S/G/Y/R/B/O |
NT_031818 | AC087720 | 148412575 | 1 |   |   | AC105449 | 86659264 | 2 | 57284 | 2681 | 48177 | 108142 |
| S/G/Y/R/B/O |
NT_031818 | AF216668 | 148413333 | 1 | chr8 | NT_031818 | AC084225 | 148415579 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_031818 | AF216668 | 148413333 | 1 | chr8 | NT_031818 | AF176681 | 148420775 | 1 | 66957 | 2751 | 3448 | 73156 |
| S/G/Y/R/B/O |
NT_031818 | AF216668 | 148413333 | 1 | chr8 | NT_031818 | AF216665 | 148416785 | 1 | 32964 | 1849 | 0 | 34813 |
| S/G/Y/R/B/O |
NT_031818 | AF216668 | 148413333 | 1 | chr8 | NT_031818 | AF216670 | 148424497 | 1 | 40210 | 1959 | 0 | 42169 |
| S/G/Y/R/B/O |
NT_031818 | AF216668 | 148413333 | 1 | chr8 | NT_031818 | AF235103 | 148068326 | 3 | 90330 | 0 | 1015 | 91345 |
| S/G/Y/R/B/O |
NT_031818 | AF216668 | 148413333 | 1 |   |   | AC087815 | 148412575 | 3 | 29999 | 0 | 1015 | 31014 |
| S/G/Y/R/B/O |
NT_031818 | AF216668 | 148413333 | 1 |   |   | AC090641 | 148412575 | 2 | 29999 | 0 | 1015 | 31014 |
| S/G/Y/R/B/O |
NT_031818 | AF216668 | 148413333 | 1 |   |   | AC105449 | 148412575 | 2 | 37532 | 0 | 1000 | 38532 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 | chr8 | NT_031818 | AF216665 | 148416785 | 1 | 29266 | 0 | 0 | 29266 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 | chr8 | NT_031818 | AF186192 | 148000032 | 3 | 43427 | 0 | 0 | 43427 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 | chr8 | NT_031818 | AF235103 | 148068326 | 3 | 182424 | 0 | 0 | 182424 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 |   |   | AC083959 | 63110695 | 1 | 129986 | 0 | 0 | 129986 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 |   |   | AC084856 | 63110695 | 1 | 64989 | 0 | 0 | 64989 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 |   |   | AC087733 | 63110695 | 1 | 43435 | 0 | 0 | 43435 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 |   |   | AC090775 | 63110695 | 1 | 82953 | 0 | 0 | 82953 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 |   |   | AC105449 | 63110695 | 2 | 34934 | 0 | 0 | 34934 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 |   |   | AF146367 | 63110695 | 3 | 29463 | 0 | 0 | 29463 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 |   |   | AF186193 | 148000032 | 1 | 33928 | 1820 | 6561 | 42309 |
| S/G/Y/R/B/O |
NT_031818 | AC084225 | 148415579 | 1 |   |   | AF228728 | 148416785 | 1 | 75408 | 0 | 4488 | 79896 |
| S/G/Y/R/B/O |
NT_031818 | AF216665 | 148416785 | 1 | chr8 | NT_031818 | AF176681 | 148420775 | 1 | 23226 | 0 | 8792 | 32018 |
| S/G/Y/R/B/O |
NT_031818 | AF216665 | 148416785 | 1 | chr8 | NT_031818 | AF216668 | 148413333 | 1 | 32964 | 1849 | 0 | 34813 |
| S/G/Y/R/B/O |
NT_031818 | AF216665 | 148416785 | 1 | chr8 | NT_031818 | AF216670 | 148424497 | 1 | 19580 | 0 | 0 | 19580 |
| S/G/Y/R/B/O |
NT_031818 | AF216665 | 148416785 | 1 | chr8 | NT_031818 | AF235103 | 148068326 | 3 | 60903 | 1851 | 0 | 62754 |
| S/G/Y/R/B/O |
NT_031818 | AF216665 | 148416785 | 1 |   |   | AC083959 | 148068326 | 1 | 14524 | 2292 | 26795 | 43611 |
| S/G/Y/R/B/O |
NT_031818 | AF216665 | 148416785 | 1 |   |   | AC084856 | 148415579 | 1 | 31623 | 0 | 0 | 31623 |
| S/G/Y/R/B/O |
NT_031818 | AF216665 | 148416785 | 1 |   |   | AC090775 | 148412575 | 1 | 14521 | 0 | 0 | 14521 |
| S/G/Y/R/B/O |
NT_031818 | AF216665 | 148416785 | 1 |   |   | AC105449 | 148412575 | 2 | 20572 | 0 | 0 | 20572 |
| S/G/Y/R/B/O |
NT_031818 | AF216665 | 148416785 | 1 |   |   | AF228728 | 148424497 | 1 | 14533 | 0 | 0 | 14533 |
| S/G/Y/R/B/O |
NT_031818 | AF176681 | 148420775 | 1 | chr8 | NT_031818 | AF216670 | 148424497 | 1 | 31061 | 0 | 2172 | 33233 |
| S/G/Y/R/B/O |
NT_031818 | AF176681 | 148420775 | 1 | chr8 | NT_031818 | AC087720 | 148412575 | 1 | 77372 | 0 | 7922 | 85294 |
| S/G/Y/R/B/O |
NT_031818 | AF176681 | 148420775 | 1 | chr8 | NT_031818 | AF216668 | 148413333 | 1 | 66957 | 2751 | 3448 | 73156 |
| S/G/Y/R/B/O |
NT_031818 | AF176681 | 148420775 | 1 | chr8 | NT_031818 | AF235103 | 148068326 | 3 | 78434 | 0 | 10096 | 88530 |
| S/G/Y/R/B/O |
NT_031818 | AF176681 | 148420775 | 1 |   |   | AC083959 | 148068326 | 1 | 34922 | 1518 | 7929 | 44369 |
| S/G/Y/R/B/O |
NT_031818 | AF176681 | 148420775 | 1 |   |   | AC084856 | 148068326 | 1 | 12325 | 0 | 0 | 12325 |
| S/G/Y/R/B/O |
NT_031818 | AF176681 | 148420775 | 1 |   |   | AC087815 | 148412575 | 3 | 36161 | 0 | 1282 | 37443 |
| S/G/Y/R/B/O |
NT_031818 | AF176681 | 148420775 | 1 |   |   | AC090641 | 148412575 | 2 | 23376 | 0 | 1282 | 24658 |
| S/G/Y/R/B/O |
NT_031818 | AF176681 | 148420775 | 1 |   |   | AC105449 | 148412575 | 2 | 87463 | 1516 | 15296 | 104275 |
| S/G/Y/R/B/O |
NT_031818 | AF176681 | 148420775 | 1 |   |   | AF146367 | 148412575 | 3 | 16574 | 0 | 0 | 16574 |
| S/G/Y/R/B/O |
NT_031818 | AF216670 | 148424497 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_031818 | AF216670 | 148424497 | 1 | chr8 | NT_031818 | AC087720 | 148412575 | 1 | 28353 | 0 | 0 | 28353 |
| S/G/Y/R/B/O |
NT_031818 | AF216670 | 148424497 | 1 | chr8 | NT_031818 | AF216665 | 148416785 | 1 | 19580 | 0 | 0 | 19580 |
| S/G/Y/R/B/O |
NT_031818 | AF216670 | 148424497 | 1 | chr8 | NT_031818 | AF216668 | 148413333 | 1 | 40210 | 1959 | 0 | 42169 |
| S/G/Y/R/B/O |
NT_031818 | AF216670 | 148424497 | 1 | chr8 | NT_031818 | AF235103 | 148068326 | 3 | 90701 | 1960 | 1411 | 94072 |
| S/G/Y/R/B/O |
NT_031818 | AF216670 | 148424497 | 1 |   |   | AC087815 | 148412575 | 3 | 31692 | 1960 | 1412 | 35064 |
| S/G/Y/R/B/O |
NT_031818 | AF216670 | 148424497 | 1 |   |   | AC090641 | 148412575 | 2 | 38593 | 1960 | 1412 | 41965 |
| S/G/Y/R/B/O |
NT_031818 | AF216670 | 148424497 | 1 |   |   | AC105449 | 148412575 | 2 | 64222 | 1956 | 0 | 66178 |
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