Chromosome 8 - Clone Overlaps

Chromosome 8 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_008060	NT_023779	NT_023744	NT_008227	NT_023736	NT_019483	NT_008010	NT_008161
NT_015280	NT_030737	NT_023704	NT_008205	NT_008300	NT_023666	NT_033187	NT_033199
NT_007988	NT_007993	NT_030743	NT_033201	NT_007995	NT_026349	NT_033197	NT_008251
NT_008045	NT_008176	NT_017505	NT_008216	NT_023678	NT_023878	NT_017431	NT_023806
NT_023679	NT_008201	NT_023727	NT_033189	NT_023795	NT_008014	NT_008101	NT_008050
NT_008231	NT_008026	NT_023673	NT_029343	NT_033186	NT_008218	NT_023672	NT_030735
NT_023660	NT_008183	NT_008166	NT_023676	NT_023821	NT_023732	NT_008209	NT_008055
NT_008186	NT_008292	NT_007972	NT_023682	NT_008117	NT_023717	NT_008007	NT_023693
NT_008059	NT_008046	NT_008144	NT_033198	NT_008048	NT_033200	NT_023670	NT_008289
NT_023742	NT_023811	NT_031821	NT_023705	NT_023663	NT_033191	NT_033195	NT_008157
NT_023726	NT_033196	NT_008023	NT_023715	NT_030744	NT_023709	NT_030741	NT_008150
NT_025796	NT_007994	NT_028251	NT_023662	NT_033193	NT_023838	NT_008104	NT_033185
NT_027068	NT_030032	NT_033192	NT_008127	NT_033194	NT_023747	NT_023684	NT_031818

NT_023736

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_023736	AC053529	4858014	1	chr8	NT_023736	AC084768	4865916	1	28333	4707	1987	35027
S/G/Y/R/B/O	NT_023736	AC053529	4858014	1	chr8	NT_023736	AC087369	4988039	3	135445	14497	24958	174900
S/G/Y/R/B/O	NT_023736	AC053529	4858014	1	chr8	NT_023736	AC090500	5919293	1	16656	4700	1987	23343
S/G/Y/R/B/O	NT_023736	AC053529	4858014	1	chr8	NT_023736	AL512348	5138704	3	43696	2686	1067	47449
S/G/Y/R/B/O	NT_023736	AC053529	4858014	1			AC004860	4306283	3	32831	4697	5274	42802
S/G/Y/R/B/O	NT_023736	AC084768	4865916	1	chr8	NT_023736	AC087369	4988039	3	43045	0	0	43045
S/G/Y/R/B/O	NT_023736	AC084768	4865916	1	chr8	NT_023736	AC004944	5924731	3	44330	0	0	44330
S/G/Y/R/B/O	NT_023736	AC084768	4865916	1	chr8	NT_023736	AC090500	5919293	1	119556	4377	2883	126816
S/G/Y/R/B/O	NT_023736	AC084768	4865916	1			AC004860	5138704	3	121533	1765	0	123298
S/G/Y/R/B/O	NT_023736	AC087369	4988039	3	chr8	NT_023736	AL512348	5138704	3	61209	0	0	61209
S/G/Y/R/B/O	NT_023736	AC087369	4988039	3	chr8	NT_023736	AC053529	4858014	1	135445	14497	24958	174900
S/G/Y/R/B/O	NT_023736	AC087369	4988039	3			AC004860	5919293	3	51275	0	0	51275
S/G/Y/R/B/O	NT_023736	AL512348	5138704	3	chr8	NT_023736	AC079054	5250942	3	117691	0	0	117691
S/G/Y/R/B/O	NT_023736	AL512348	5138704	3	chr8	NT_023736	AC053529	4858014	1	43696	2686	1067	47449
S/G/Y/R/B/O	NT_023736	AL512348	5138704	3			AC078836	4858014	1	37725	0	0	37725
S/G/Y/R/B/O	NT_023736	AL512348	5138704	3			AL513474	4988039	1	74175	0	0	74175
S/G/Y/R/B/O	NT_023736	AC079054	5250942	3	chr8	NT_023736	AC009435	5309081	1	79348	0	0	79348
S/G/Y/R/B/O	NT_023736	AC079054	5250942	3			AC078836	4858014	1	93593	2688	0	96281
S/G/Y/R/B/O	NT_023736	AC079054	5250942	3			AL513474	5138704	1	139277	0	0	139277
S/G/Y/R/B/O	NT_023736	AC009435	5309081	1	chr8	NT_023736	AC087203	5358408	2	0	0	0	0
S/G/Y/R/B/O	NT_023736	AC009435	5309081	1	chr8	NT_023736	AC011727	5746110	2	59170	0	0	59170
S/G/Y/R/B/O	NT_023736	AC009435	5309081	1			AC078836	5746110	1	107144	2688	43521	153353
S/G/Y/R/B/O	NT_023736	AC087203	5358408	2	chr8	NT_023736	AF252830	5406307	3	0	0	0	0
S/G/Y/R/B/O	NT_023736	AC087203	5358408	2	chr8	NT_019483	AC068974	7734815	1	200526	0	29936	230462
S/G/Y/R/B/O	NT_023736	AC087203	5358408	2	chr8	NT_019483	AC083981	8550477	1	77540	0	0	77540
S/G/Y/R/B/O	NT_023736	AC087203	5358408	2			AC074340	7734815	1	32822	4374	42232	79428
S/G/Y/R/B/O	NT_023736	AF252830	5406307	3	chr8	NT_023736	AF189745	5487972	3	90294	0	0	90294
S/G/Y/R/B/O	NT_023736	AF252830	5406307	3	chr8	NT_019483	AC068974	7734815	1	11009	0	13370	24379
S/G/Y/R/B/O	NT_023736	AF252830	5406307	3			AC074340	7734815	1	51965	2412	32993	87370
S/G/Y/R/B/O	NT_023736	AF252830	5406307	3			AC084121	8550477	1	15448	0	0	15448
S/G/Y/R/B/O	NT_023736	AF252830	5406307	3			AF285443	5487972	3	139955	0	0	139955
S/G/Y/R/B/O	NT_023736	AF252830	5406307	3			AY005129	5487972	3	19342	0	0	19342
S/G/Y/R/B/O	NT_023736	AF189745	5487972	3	chr8	NT_023736	AC068411	5633245	1	57321	0	8896	66217
S/G/Y/R/B/O	NT_023736	AF189745	5487972	3			AC074340	5633245	1	31716	5331	6612	43659
S/G/Y/R/B/O	NT_023736	AF189745	5487972	3			AC084121	245580247	1	64992	2293	0	67285
S/G/Y/R/B/O	NT_023736	AF189745	5487972	3			AF202031	245580247	3	140965	0	0	140965
S/G/Y/R/B/O	NT_023736	AF189745	5487972	3			AF252831	5406307	1	49294	0	0	49294
S/G/Y/R/B/O	NT_023736	AF189745	5487972	3			AF285443	5406307	3	97811	0	0	97811
S/G/Y/R/B/O	NT_023736	AF189745	5487972	3			AY005129	5406307	3	19358	0	0	19358
S/G/Y/R/B/O	NT_023736	AC068411	5633245	1	chr8	NT_023736	AC011727	5746110	2	0	0	0	0
S/G/Y/R/B/O	NT_023736	AC068411	5633245	1			AC025126	5753808	1	10170	5205	22587	37962
S/G/Y/R/B/O	NT_023736	AC068411	5633245	1			AC084121	245580247	1	27736	0	24334	52070
S/G/Y/R/B/O	NT_023736	AC068411	5633245	1			AF202031	5487972	3	66121	0	0	66121
S/G/Y/R/B/O	NT_023736	AC068411	5633245	1			AF285443	5406307	3	22707	0	0	22707
S/G/Y/R/B/O	NT_023736	AC011727	5746110	2	chr8	NT_023736	AC000385	5753808	3	0	0	0	0
S/G/Y/R/B/O	NT_023736	AC011727	5746110	2	chr8	NT_023736	AC009435	5309081	1	59170	0	0	59170
S/G/Y/R/B/O	NT_023736	AC011727	5746110	2	chr8	NT_023736	AC107943	6670338	2	82043	0	1124	83167
S/G/Y/R/B/O	NT_023736	AC000385	5753808	3	chr8	NT_023736	AC090500	5919293	1	0	0	0	0
S/G/Y/R/B/O	NT_023736	AC000385	5753808	3			AC025126	6670338	1	16586	1583	19142	37311
S/G/Y/R/B/O	NT_023736	AC090500	5919293	1	chr8	NT_023736	AC004944	5924731	3	76810	2290	0	79100
S/G/Y/R/B/O	NT_023736	AC090500	5919293	1	chr8	NT_023736	AC053529	4858014	1	16656	4700	1987	23343
S/G/Y/R/B/O	NT_023736	AC090500	5919293	1	chr8	NT_023736	AC084768	4865916	1	119556	4377	2883	126816
S/G/Y/R/B/O	NT_023736	AC090500	5919293	1			AC004860	12179983	3	96988	1551	3896	102435
S/G/Y/R/B/O	NT_023736	AC004944	5924731	3	chr8	NT_023736	AC091193	6041309	3	0	0	0	0
S/G/Y/R/B/O	NT_023736	AC004944	5924731	3	chr8	NT_023736	AC084768	4865916	1	44330	0	0	44330
S/G/Y/R/B/O	NT_023736	AC004944	5924731	3			AC073478	4865916	1	41242	3858	10686	55786
S/G/Y/R/B/O	NT_023736	AC091193	6041309	3	chr8	NT_023736	AC007718	6127903	3	55468	0	0	55468
S/G/Y/R/B/O	NT_023736	AC091193	6041309	3			AC073478	6127903	1	51664	8593	59508	119765
S/G/Y/R/B/O	NT_023736	AC007718	6127903	3	chr8	NT_023736	AC100856	6207363	3	70501	0	0	70501
S/G/Y/R/B/O	NT_023736	AC007718	6127903	3			AC073478	6127903	1	22885	1684	16819	41388
S/G/Y/R/B/O	NT_023736	AC100856	6207363	3	chr8	NT_023736	AC019176	6387923	3	0	0	2348	2348
S/G/Y/R/B/O	NT_023736	AC019176	6387923	3	chr8	NT_023736	AC105998	6558603	2	87253	0	0	87253
S/G/Y/R/B/O	NT_023736	AC019176	6387923	3			AF202962	6558603	1	28692	0	30656	59348
S/G/Y/R/B/O	NT_023736	AC105998	6558603	2	chr8	NT_023736	AC107943	6670338	2	0	0	0	0
S/G/Y/R/B/O	NT_023736	AC107943	6670338	2	chr8	NT_023736	AC016065	6702025	3	80986	0	0	80986
S/G/Y/R/B/O	NT_023736	AC107943	6670338	2	chr8	NT_023736	AC011727	5746110	2	82043	0	1124	83167
S/G/Y/R/B/O	NT_023736	AC107943	6670338	2	chr8	NT_023736	AC011835	6724719	3	58673	0	0	58673
S/G/Y/R/B/O	NT_023736	AC016065	6702025	3	chr8	NT_023736	AC011835	6724719	3	155794	0	0	155794
S/G/Y/R/B/O	NT_023736	AC016065	6702025	3	chr8	NT_023736	AC018398	6800508	1	80890	0	0	80890
S/G/Y/R/B/O	NT_023736	AC016065	6702025	3			AF257499	6670338	1	52345	1772	11823	65940
S/G/Y/R/B/O	NT_023736	AC011835	6724719	3	chr8	NT_023736	AC018398	6800508	1	105898	0	0	105898
S/G/Y/R/B/O	NT_023736	AC011835	6724719	3	chr8	NT_023736	AC091095	6989486	1	24759	0	0	24759
S/G/Y/R/B/O	NT_023736	AC011835	6724719	3	chr8	NT_023736	AC107943	6670338	2	58673	0	0	58673
S/G/Y/R/B/O	NT_023736	AC011835	6724719	3			AF257499	6670338	1	66302	0	13588	79890
S/G/Y/R/B/O	NT_023736	AC018398	6800508	1	chr8	NT_023736	AC091095	6989486	1	103824	2096	0	105920
S/G/Y/R/B/O	NT_023736	AC018398	6800508	1	chr8	NT_023736	AC016065	6702025	3	80890	0	0	80890
S/G/Y/R/B/O	NT_023736	AC018398	6800508	1			AF257499	6989486	1	86511	0	0	86511
S/G/Y/R/B/O	NT_023736	AC091095	6989486	1	chr8	NT_023736	AF287957	6989822	3	59409	0	773	60182
S/G/Y/R/B/O	NT_023736	AC091095	6989486	1	chr8	NT_023736	AC011835	6724719	3	24759	0	0	24759
S/G/Y/R/B/O	NT_023736	AC091095	6989486	1			AC009632	6989822	1	16298	0	8441	24739
S/G/Y/R/B/O	NT_023736	AC091095	6989486	1			AC091099	39207514	1	49079	0	0	49079
S/G/Y/R/B/O	NT_023736	AC091095	6989486	1			AF257499	37410614	1	10537	0	0	10537
S/G/Y/R/B/O	NT_023736	AF287957	6989822	3	chr8	NT_023736	AF233439	7149832	3	0	0	0	0
S/G/Y/R/B/O	NT_023736	AF287957	6989822	3			AC009631	6989822	2	138540	0	0	138540
S/G/Y/R/B/O	NT_023736	AF287957	6989822	3			AC009632	6989822	1	83321	6516	22288	112125
S/G/Y/R/B/O	NT_023736	AF287957	6989822	3			AC022578	6800508	1	127370	4644	0	132014
S/G/Y/R/B/O	NT_023736	AF287957	6989822	3			AC026216	6800508	1	10824	6680	44095	61599
S/G/Y/R/B/O	NT_023736	AF287957	6989822	3			AC091099	6989486	1	121796	0	1872	123668
S/G/Y/R/B/O	NT_023736	AF233439	7149832	3	chr8	NT_023736	AF298854	7184227	3	109814	0	0	109814
S/G/Y/R/B/O	NT_023736	AF233439	7149832	3	chr8	NT_023736	AF238378	7377573	3	14863	0	0	14863
S/G/Y/R/B/O	NT_023736	AF233439	7149832	3	chr8	NT_023736	AF314060	7294512	3	78993	0	0	78993
S/G/Y/R/B/O	NT_023736	AF233439	7149832	3			AC009631	6989486	2	56086	0	0	56086
S/G/Y/R/B/O	NT_023736	AF233439	7149832	3			AC009632	6989486	1	26601	4864	13100	44565
S/G/Y/R/B/O	NT_023736	AF233439	7149832	3			AC022578	215200910	1	40854	0	0	40854
S/G/Y/R/B/O	NT_023736	AF233439	7149832	3			AC079018	215200910	2	163433	0	0	163433
S/G/Y/R/B/O	NT_023736	AF233439	7149832	3			AC091099	215200910	1	27104	0	1286	28390
S/G/Y/R/B/O	NT_023736	AF233439	7149832	3			AF200455	215200910	1	70782	1365	10502	82649
S/G/Y/R/B/O	NT_023736	AF233439	7149832	3			AF205406	215200910	3	167789	0	0	167789
S/G/Y/R/B/O	NT_023736	AF298854	7184227	3	chr8	NT_023736	AF314060	7294512	3	21208	0	0	21208
S/G/Y/R/B/O	NT_023736	AF298854	7184227	3			AC009631	7294512	2	11319	0	0	11319
S/G/Y/R/B/O	NT_023736	AF298854	7184227	3			AC009632	7294512	1	14625	0	4317	18942
S/G/Y/R/B/O	NT_023736	AF298854	7184227	3			AC079018	215200910	2	52833	0	0	52833
S/G/Y/R/B/O	NT_023736	AF298854	7184227	3			AF205406	215200910	3	99993	0	0	99993
S/G/Y/R/B/O	NT_023736	AF314060	7294512	3	chr8	NT_023736	AF238378	7377573	3	0	0	0	0
S/G/Y/R/B/O	NT_023736	AF314060	7294512	3	chr8	NT_023736	AF233439	7149832	3	78993	0	0	78993
S/G/Y/R/B/O	NT_023736	AF314060	7294512	3			AC079018	215200910	2	79008	0	0	79008
S/G/Y/R/B/O	NT_023736	AF314060	7294512	3			AF200455	215200910	1	44147	1355	0	45502
S/G/Y/R/B/O	NT_023736	AF314060	7294512	3			AF205406	215200910	3	78967	0	0	78967
S/G/Y/R/B/O	NT_023736	AF238378	7377573	3	chr8	NT_023736	AF228730	7407667	3	64364	0	0	64364
S/G/Y/R/B/O	NT_023736	AF238378	7377573	3	chr8	NT_023736	AF233439	7149832	3	14863	0	0	14863
S/G/Y/R/B/O	NT_023736	AF238378	7377573	3			AC079018	215200910	2	19027	0	0	19027
S/G/Y/R/B/O	NT_023736	AF238378	7377573	3			AF200455	215200910	1	14680	0	0	14680
S/G/Y/R/B/O	NT_023736	AF228730	7407667	3
S/G/Y/R/B/O	NT_023736	AF228730	7407667	3			AC084121	5633245	1	55363	0	12529	67892
S/G/Y/R/B/O	NT_023736	AF228730	7407667	3			AF215847	8032343	1	29643	0	8707	38350