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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008055 | AC044874 | 75960574 | 1 | chr8 | NT_008055 | AC090903 | 75967005 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008055 | AC044874 | 75960574 | 1 | chr8 | NT_008055 | AC022274 | 76622777 | 3 | 66731 | 7458 | 1078 | 75267 |
| S/G/Y/R/B/O |
NT_008055 | AC044874 | 75960574 | 1 | chr8 | NT_008055 | AC105218 | 76780250 | 3 | 67059 | 6282 | 1205 | 74546 |
| S/G/Y/R/B/O |
NT_008055 | AC090903 | 75967005 | 1 | chr8 | NT_008055 | AF305874 | 75997162 | 1 | 119484 | 2000 | 0 | 121484 |
| S/G/Y/R/B/O |
NT_008055 | AC090903 | 75967005 | 1 | chr8 | NT_008055 | AC115837 | 76094065 | 3 | 89896 | 0 | 0 | 89896 |
| S/G/Y/R/B/O |
NT_008055 | AC090903 | 75967005 | 1 |   |   | AC009629 | 76780250 | 1 | 73861 | 2785 | 418 | 77064 |
| S/G/Y/R/B/O |
NT_008055 | AC090903 | 75967005 | 1 |   |   | AC087532 | 76780250 | 1 | 90053 | 0 | 830 | 90883 |
| S/G/Y/R/B/O |
NT_008055 | AF305874 | 75997162 | 1 | chr8 | NT_008055 | AC115837 | 76094065 | 3 | 80063 | 0 | 0 | 80063 |
| S/G/Y/R/B/O |
NT_008055 | AF305874 | 75997162 | 1 |   |   | AC009629 | 75997162 | 1 | 18120 | 0 | 9356 | 27476 |
| S/G/Y/R/B/O |
NT_008055 | AF305874 | 75997162 | 1 |   |   | AC087532 | 75997162 | 1 | 70944 | 1965 | 11409 | 84318 |
| S/G/Y/R/B/O |
NT_008055 | AC115837 | 76094065 | 3 | chr8 | NT_008055 | AC026616 | 76144806 | 3 | 51585 | 0 | 0 | 51585 |
| S/G/Y/R/B/O |
NT_008055 | AC115837 | 76094065 | 3 | chr8 | NT_008055 | AC090903 | 75967005 | 1 | 89896 | 0 | 0 | 89896 |
| S/G/Y/R/B/O |
NT_008055 | AC115837 | 76094065 | 3 |   |   | AC009629 | 76094065 | 1 | 125659 | 5550 | 0 | 131209 |
| S/G/Y/R/B/O |
NT_008055 | AC115837 | 76094065 | 3 |   |   | AC016126 | 76094065 | 1 | 18810 | 30201 | 6940 | 55951 |
| S/G/Y/R/B/O |
NT_008055 | AC115837 | 76094065 | 3 |   |   | AC087532 | 76144806 | 1 | 72371 | 0 | 0 | 72371 |
| S/G/Y/R/B/O |
NT_008055 | AC026616 | 76144806 | 3 | chr8 | NT_008055 | AC011632 | 76303228 | 3 | 49996 | 0 | 0 | 49996 |
| S/G/Y/R/B/O |
NT_008055 | AC026616 | 76144806 | 3 |   |   | AC009629 | 75997162 | 1 | 68626 | 0 | 0 | 68626 |
| S/G/Y/R/B/O |
NT_008055 | AC011632 | 76303228 | 3 | chr8 | NT_008055 | AC084336 | 76428975 | 3 | 118463 | 0 | 0 | 118463 |
| S/G/Y/R/B/O |
NT_008055 | AC084336 | 76428975 | 3 | chr8 | NT_008055 | AC100782 | 76437654 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008055 | AC100782 | 76437654 | 3 | chr8 | NT_008055 | AC022274 | 76622777 | 3 | 33228 | 0 | 0 | 33228 |
| S/G/Y/R/B/O |
NT_008055 | AC100782 | 76437654 | 3 |   |   | AC020570 | 76303228 | 1 | 131074 | 9218 | 35313 | 175605 |
| S/G/Y/R/B/O |
NT_008055 | AC100782 | 76437654 | 3 |   |   | AC037484 | 76622777 | 1 | 103933 | 0 | 0 | 103933 |
| S/G/Y/R/B/O |
NT_008055 | AC022274 | 76622777 | 3 | chr8 | NT_008055 | AC105218 | 76780250 | 3 | 27686 | 0 | 0 | 27686 |
| S/G/Y/R/B/O |
NT_008055 | AC022274 | 76622777 | 3 | chr8 | NT_008055 | AC044874 | 75960574 | 1 | 66731 | 7458 | 1078 | 75267 |
| S/G/Y/R/B/O |
NT_008055 | AC022274 | 76622777 | 3 |   |   | AC020570 | 76622777 | 1 | 21436 | 2137 | 0 | 23573 |
| S/G/Y/R/B/O |
NT_008055 | AC022274 | 76622777 | 3 |   |   | AC037484 | 76622777 | 1 | 92893 | 0 | 0 | 92893 |
| S/G/Y/R/B/O |
NT_008055 | AC105218 | 76780250 | 3 | chr8 | NT_008055 | AC021500 | 76890980 | 2 | 67080 | 0 | 0 | 67080 |
| S/G/Y/R/B/O |
NT_008055 | AC105218 | 76780250 | 3 | chr8 | NT_008055 | AC044874 | 75960574 | 1 | 67059 | 6282 | 1205 | 74546 |
| S/G/Y/R/B/O |
NT_008055 | AC105218 | 76780250 | 3 |   |   | AF276756 | 133308908 | 1 | 66165 | 0 | 0 | 66165 |
| S/G/Y/R/B/O |
NT_008055 | AC021500 | 76890980 | 2 | chr8 | NT_008055 | AC061989 | 76984248 | 1 | 73605 | 0 | 0 | 73605 |
| S/G/Y/R/B/O |
NT_008055 | AC021500 | 76890980 | 2 |   |   | AF207953 | 76780250 | 2 | 14408 | 0 | 0 | 14408 |
| S/G/Y/R/B/O |
NT_008055 | AC021500 | 76890980 | 2 |   |   | AF276756 | 76780250 | 1 | 102597 | 0 | 0 | 102597 |
| S/G/Y/R/B/O |
NT_008055 | AC061989 | 76984248 | 1 | chr8 | NT_008055 | AC018390 | 77063722 | 3 | 31905 | 0 | 0 | 31905 |
| S/G/Y/R/B/O |
NT_008055 | AC061989 | 76984248 | 1 |   |   | AC040917 | 76890980 | 1 | 112574 | 0 | 0 | 112574 |
| S/G/Y/R/B/O |
NT_008055 | AC061989 | 76984248 | 1 |   |   | AF276756 | 246544326 | 1 | 61215 | 0 | 0 | 61215 |
| S/G/Y/R/B/O |
NT_008055 | AC018390 | 77063722 | 3 | chr8 | NT_008055 | AC016194 | 77230852 | 3 | 71438 | 0 | 0 | 71438 |
| S/G/Y/R/B/O |
NT_008055 | AC018390 | 77063722 | 3 |   |   | AC040917 | 77230852 | 1 | 76080 | 0 | 0 | 76080 |
| S/G/Y/R/B/O |
NT_008055 | AC018390 | 77063722 | 3 |   |   | AF207953 | 139910958 | 2 | 16782 | 0 | 0 | 16782 |
| S/G/Y/R/B/O |
NT_008055 | AC016194 | 77230852 | 3 | chr8 | NT_008055 | AC021842 | 77306107 | 2 | 3160 | 0 | 0 | 3160 |
| S/G/Y/R/B/O |
NT_008055 | AC016194 | 77230852 | 3 |   |   | AF188032 | 77306107 | 1 | 78479 | 0 | 0 | 78479 |
| S/G/Y/R/B/O |
NT_008055 | AC021842 | 77306107 | 2 | chr8 | NT_008055 | AC021311 | 77492986 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008055 | AC021842 | 77306107 | 2 |   |   | AC024043 | 77230852 | 1 | 71113 | 6597 | 1138 | 78848 |
| S/G/Y/R/B/O |
NT_008055 | AC021842 | 77306107 | 2 |   |   | AC087351 | 77230852 | 2 | 95109 | 0 | 1322 | 96431 |
| S/G/Y/R/B/O |
NT_008055 | AC021842 | 77306107 | 2 |   |   | AF188032 | 77230852 | 1 | 22397 | 0 | 0 | 22397 |
| S/G/Y/R/B/O |
NT_008055 | AC021311 | 77492986 | 3 | chr8 | NT_008055 | AC011029 | 77637181 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008055 | AC021311 | 77492986 | 3 |   |   | AC024043 | 78811147 | 1 | 69574 | 0 | 0 | 69574 |
| S/G/Y/R/B/O |
NT_008055 | AC021311 | 77492986 | 3 |   |   | AC087351 | 78811147 | 2 | 84901 | 0 | 0 | 84901 |
| S/G/Y/R/B/O |
NT_008055 | AC011029 | 77637181 | 3 | chr8 | NT_008055 | AC073510 | 77797562 | 2 | 55191 | 0 | 0 | 55191 |
| S/G/Y/R/B/O |
NT_008055 | AC073510 | 77797562 | 2 | chr8 | NT_008055 | AC067773 | 77875433 | 3 | 2070 | 0 | 0 | 2070 |
| S/G/Y/R/B/O |
NT_008055 | AC067773 | 77875433 | 3 | chr8 | NT_008055 | AC011716 | 78047760 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008055 | AC067773 | 77875433 | 3 |   |   | AC013509 | 77875433 | 2 | 118882 | 0 | 0 | 118882 |
| S/G/Y/R/B/O |
NT_008055 | AC011716 | 78047760 | 3 | chr8 | NT_008055 | AC087110 | 78218914 | 3 | 25099 | 0 | 0 | 25099 |
| S/G/Y/R/B/O |
NT_008055 | AC011716 | 78047760 | 3 |   |   | AC013509 | 77797562 | 2 | 33816 | 0 | 0 | 33816 |
| S/G/Y/R/B/O |
NT_008055 | AC011716 | 78047760 | 3 |   |   | AC079993 | 77797562 | 1 | 48153 | 3930 | 19648 | 71731 |
| S/G/Y/R/B/O |
NT_008055 | AC087110 | 78218914 | 3 | chr8 | NT_008055 | AC023200 | 78339345 | 3 | 66568 | 0 | 0 | 66568 |
| S/G/Y/R/B/O |
NT_008055 | AC087110 | 78218914 | 3 |   |   | AC079993 | 78339345 | 1 | 86301 | 1760 | 7812 | 95873 |
| S/G/Y/R/B/O |
NT_008055 | AC087110 | 78218914 | 3 |   |   | AC090711 | 78339345 | 2 | 119659 | 0 | 0 | 119659 |
| S/G/Y/R/B/O |
NT_008055 | AC023200 | 78339345 | 3 | chr8 | NT_008055 | AC090810 | 78432283 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008055 | AC023200 | 78339345 | 3 |   |   | AC090711 | 78218914 | 2 | 99912 | 0 | 0 | 99912 |
| S/G/Y/R/B/O |
NT_008055 | AC090810 | 78432283 | 3 | chr8 | NT_008055 | AC018995 | 78599979 | 2 | 10493 | 0 | 0 | 10493 |
| S/G/Y/R/B/O |
NT_008055 | AC090810 | 78432283 | 3 |   |   | AC067832 | 78599979 | 1 | 75582 | 0 | 0 | 75582 |
| S/G/Y/R/B/O |
NT_008055 | AC018995 | 78599979 | 2 | chr8 | NT_008055 | AC105242 | 78750950 | 3 | 52716 | 0 | 0 | 52716 |
| S/G/Y/R/B/O |
NT_008055 | AC018995 | 78599979 | 2 |   |   | AC067832 | 78599979 | 1 | 111996 | 0 | 0 | 111996 |
| S/G/Y/R/B/O |
NT_008055 | AC105242 | 78750950 | 3 | chr8 | NT_008055 | AC021529 | 78811147 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008055 | AC021529 | 78811147 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008055 | AC021529 | 78811147 | 1 | chr2 | NT_032990 | AC023131 | 112613088 | 3 | 19831 | 0 | 0 | 19831 |
| S/G/Y/R/B/O |
NT_008055 | AC021529 | 78811147 | 1 | chr2 | NT_032990 | AC096591 | 112430653 | 3 | 155723 | 0 | 870 | 156593 |
| S/G/Y/R/B/O |
NT_008055 | AC021529 | 78811147 | 1 | chr2 | NT_032998 | AC104172 | 182445761 | 1 | 142140 | 0 | 1499 | 143639 |
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