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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008166 | AC084082 | 67956161 | 3 | chr8 | NT_008166 | AF277371 | 68141300 | 1 | 28331 | 4913 | 5616 | 38860 |
| S/G/Y/R/B/O |
NT_008166 | AC084082 | 67956161 | 3 | chr8 | NT_008166 | AC090195 | 68145209 | 1 | 19613 | 0 | 1472 | 21085 |
| S/G/Y/R/B/O |
NT_008166 | AC084082 | 67956161 | 3 |   |   | AF263284 | 68145209 | 2 | 99525 | 0 | 0 | 99525 |
| S/G/Y/R/B/O |
NT_008166 | AF277371 | 68141300 | 1 | chr8 | NT_008166 | AC090195 | 68145209 | 1 | 66291 | 5908 | 27111 | 99310 |
| S/G/Y/R/B/O |
NT_008166 | AF277371 | 68141300 | 1 | chr8 | NT_008166 | AC090196 | 68243940 | 2 | 62362 | 0 | 9942 | 72304 |
| S/G/Y/R/B/O |
NT_008166 | AF277371 | 68141300 | 1 |   |   | AC021240 | 68141300 | 1 | 69410 | 0 | 33175 | 102585 |
| S/G/Y/R/B/O |
NT_008166 | AF277371 | 68141300 | 1 |   |   | AF277372 | 68243940 | 1 | 28500 | 7377 | 23606 | 59483 |
| S/G/Y/R/B/O |
NT_008166 | AC090195 | 68145209 | 1 | chr8 | NT_008166 | AC090196 | 68243940 | 2 | 89226 | 1837 | 1003 | 92066 |
| S/G/Y/R/B/O |
NT_008166 | AC090195 | 68145209 | 1 | chr8 | NT_008166 | AC084082 | 67956161 | 3 | 19613 | 0 | 1472 | 21085 |
| S/G/Y/R/B/O |
NT_008166 | AC090195 | 68145209 | 1 |   |   | AC021240 | 68243940 | 1 | 120579 | 4649 | 2145 | 127373 |
| S/G/Y/R/B/O |
NT_008166 | AC090195 | 68145209 | 1 |   |   | AF277372 | 68141300 | 1 | 65656 | 2292 | 0 | 67948 |
| S/G/Y/R/B/O |
NT_008166 | AC090196 | 68243940 | 2 | chr8 | NT_008166 | AC009879 | 68355743 | 1 | 4179 | 0 | 5654 | 9833 |
| S/G/Y/R/B/O |
NT_008166 | AC090196 | 68243940 | 2 | chr8 | NT_008166 | AF277371 | 68141300 | 1 | 62362 | 0 | 9942 | 72304 |
| S/G/Y/R/B/O |
NT_008166 | AC090196 | 68243940 | 2 |   |   | AC021240 | 68355743 | 1 | 136802 | 0 | 0 | 136802 |
| S/G/Y/R/B/O |
NT_008166 | AC090196 | 68243940 | 2 |   |   | AF277372 | 68141300 | 1 | 97091 | 18424 | 20259 | 135774 |
| S/G/Y/R/B/O |
NT_008166 | AC009879 | 68355743 | 1 | chr8 | NT_008166 | AC083928 | 68451432 | 1 | 33568 | 0 | 48264 | 81832 |
| S/G/Y/R/B/O |
NT_008166 | AC009879 | 68355743 | 1 |   |   | AC021652 | 38590111 | 1 | 20072 | 2505 | 31695 | 54272 |
| S/G/Y/R/B/O |
NT_008166 | AC083928 | 68451432 | 1 | chr8 | NT_008166 | AC079191 | 68564500 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008166 | AC083928 | 68451432 | 1 | chr8 | NT_008166 | AC026294 | 69038926 | 1 | 44997 | 1566 | 0 | 46563 |
| S/G/Y/R/B/O |
NT_008166 | AC083928 | 68451432 | 1 | chr8 | NT_008166 | AC087768 | 69206688 | 1 | 117788 | 1566 | 0 | 119354 |
| S/G/Y/R/B/O |
NT_008166 | AC083928 | 68451432 | 1 |   |   | AC090154 | 69206688 | 1 | 50178 | 1544 | 0 | 51722 |
| S/G/Y/R/B/O |
NT_008166 | AC079191 | 68564500 | 1 | chr8 | NT_008166 | AC110998 | 68570698 | 2 | 76111 | 16490 | 12041 | 104642 |
| S/G/Y/R/B/O |
NT_008166 | AC079191 | 68564500 | 1 | chr8 | NT_008166 | AC109335 | 68573953 | 2 | 115462 | 10801 | 10833 | 137096 |
| S/G/Y/R/B/O |
NT_008166 | AC110998 | 68570698 | 2 | chr8 | NT_008166 | AC109335 | 68573953 | 2 | 85896 | 0 | 772 | 86668 |
| S/G/Y/R/B/O |
NT_008166 | AC109335 | 68573953 | 2 | chr8 | NT_008166 | AC087359 | 68729372 | 2 | 27355 | 0 | 0 | 27355 |
| S/G/Y/R/B/O |
NT_008166 | AC109335 | 68573953 | 2 | chr8 | NT_008166 | AC079191 | 68564500 | 1 | 115462 | 10801 | 10833 | 137096 |
| S/G/Y/R/B/O |
NT_008166 | AC109335 | 68573953 | 2 |   |   | AC020714 | 52024283 | 1 | 27350 | 0 | 0 | 27350 |
| S/G/Y/R/B/O |
NT_008166 | AC087359 | 68729372 | 2 | chr8 | NT_008166 | AC011031 | 68857073 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008166 | AC087359 | 68729372 | 2 | chr8 | NT_008166 | AC021321 | 69375794 | 3 | 98752 | 0 | 0 | 98752 |
| S/G/Y/R/B/O |
NT_008166 | AC087359 | 68729372 | 2 |   |   | AC020714 | 68570698 | 1 | 122316 | 0 | 59326 | 181642 |
| S/G/Y/R/B/O |
NT_008166 | AC011031 | 68857073 | 1 | chr8 | NT_008166 | AF293336 | 68983673 | 1 | 81387 | 0 | 9337 | 90724 |
| S/G/Y/R/B/O |
NT_008166 | AC011031 | 68857073 | 1 |   |   | AC090154 | 69039401 | 1 | 18416 | 0 | 0 | 18416 |
| S/G/Y/R/B/O |
NT_008166 | AF293336 | 68983673 | 1 | chr8 | NT_008166 | AC026294 | 69038926 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008166 | AC026294 | 69038926 | 1 | chr8 | NT_008166 | AC084172 | 69039401 | 1 | 87029 | 0 | 7732 | 94761 |
| S/G/Y/R/B/O |
NT_008166 | AC026294 | 69038926 | 1 | chr8 | NT_008166 | AC083928 | 68451432 | 1 | 44997 | 1566 | 0 | 46563 |
| S/G/Y/R/B/O |
NT_008166 | AC026294 | 69038926 | 1 | chr8 | NT_008166 | AC087768 | 69206688 | 1 | 56772 | 0 | 0 | 56772 |
| S/G/Y/R/B/O |
NT_008166 | AC026294 | 69038926 | 1 | chr8 | NT_008166 | AF172272 | 69099354 | 1 | 25474 | 0 | 1723 | 27197 |
| S/G/Y/R/B/O |
NT_008166 | AC026294 | 69038926 | 1 |   |   | AC090154 | 69206688 | 1 | 166504 | 0 | 11234 | 177738 |
| S/G/Y/R/B/O |
NT_008166 | AC084172 | 69039401 | 1 | chr8 | NT_008166 | AF172272 | 69099354 | 1 | 12757 | 0 | 4398 | 17155 |
| S/G/Y/R/B/O |
NT_008166 | AC084172 | 69039401 | 1 | chr8 | NT_008166 | AC087768 | 69206688 | 1 | 12370 | 0 | 0 | 12370 |
| S/G/Y/R/B/O |
NT_008166 | AC084172 | 69039401 | 1 |   |   | AC090154 | 69206688 | 1 | 248990 | 0 | 0 | 248990 |
| S/G/Y/R/B/O |
NT_008166 | AF172272 | 69099354 | 1 | chr8 | NT_008166 | AC087768 | 69206688 | 1 | 8623 | 0 | 3664 | 12287 |
| S/G/Y/R/B/O |
NT_008166 | AF172272 | 69099354 | 1 | chr8 | NT_008166 | AC026294 | 69038926 | 1 | 25474 | 0 | 1723 | 27197 |
| S/G/Y/R/B/O |
NT_008166 | AF172272 | 69099354 | 1 |   |   | AC090154 | 69206688 | 1 | 64467 | 0 | 53356 | 117823 |
| S/G/Y/R/B/O |
NT_008166 | AC087768 | 69206688 | 1 | chr8 | NT_008166 | AC021321 | 69375794 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008166 | AC087768 | 69206688 | 1 | chr8 | NT_008166 | AC026294 | 69038926 | 1 | 56772 | 0 | 0 | 56772 |
| S/G/Y/R/B/O |
NT_008166 | AC087768 | 69206688 | 1 | chr8 | NT_008166 | AC083928 | 68451432 | 1 | 117788 | 1566 | 0 | 119354 |
| S/G/Y/R/B/O |
NT_008166 | AC087768 | 69206688 | 1 | chr8 | NT_008166 | AC084172 | 69039401 | 1 | 12370 | 0 | 0 | 12370 |
| S/G/Y/R/B/O |
NT_008166 | AC087768 | 69206688 | 1 |   |   | AC090154 | 69039401 | 1 | 95221 | 0 | 13299 | 108520 |
| S/G/Y/R/B/O |
NT_008166 | AC021321 | 69375794 | 3 | chr8 | NT_008166 | AC011037 | 69385073 | 3 | 61404 | 0 | 0 | 61404 |
| S/G/Y/R/B/O |
NT_008166 | AC021321 | 69375794 | 3 | chr8 | NT_008166 | AC087359 | 68729372 | 2 | 98752 | 0 | 0 | 98752 |
| S/G/Y/R/B/O |
NT_008166 | AC021321 | 69375794 | 3 |   |   | AC020714 | 69385073 | 1 | 72556 | 0 | 26033 | 98589 |
| S/G/Y/R/B/O |
NT_008166 | AC011037 | 69385073 | 3 | chr8 | NT_008166 | AC027006 | 69554751 | 3 | 5345 | 0 | 0 | 5345 |
| S/G/Y/R/B/O |
NT_008166 | AC027006 | 69554751 | 3 | chr8 | NT_008166 | AC022861 | 69651131 | 1 | 4754 | 0 | 0 | 4754 |
| S/G/Y/R/B/O |
NT_008166 | AC022861 | 69651131 | 1 | chr8 | NT_008166 | AC022874 | 69799195 | 3 | 16946 | 0 | 0 | 16946 |
| S/G/Y/R/B/O |
NT_008166 | AC022861 | 69651131 | 1 |   |   | AC009626 | 69651131 | 3 | 92454 | 0 | 0 | 92454 |
| S/G/Y/R/B/O |
NT_008166 | AC022874 | 69799195 | 3 | chr8 | NT_008166 | AC104416 | 69959740 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008166 | AC022874 | 69799195 | 3 |   |   | AC009626 | 69554751 | 3 | 106406 | 0 | 0 | 106406 |
| S/G/Y/R/B/O |
NT_008166 | AC104416 | 69959740 | 2 | chr8 | NT_008166 | AC018612 | 70029772 | 3 | 99759 | 0 | 0 | 99759 |
| S/G/Y/R/B/O |
NT_008166 | AC018612 | 70029772 | 3 | chr8 | NT_008166 | AC011853 | 70208297 | 2 | 85754 | 0 | 0 | 85754 |
| S/G/Y/R/B/O |
NT_008166 | AC011853 | 70208297 | 2 | chr8 | NT_008166 | AC073253 | 70294070 | 1 | 21897 | 0 | 0 | 21897 |
| S/G/Y/R/B/O |
NT_008166 | AC073253 | 70294070 | 1 | chr8 | NT_008166 | AC067871 | 70348379 | 2 | 47222 | 1566 | 13675 | 62463 |
| S/G/Y/R/B/O |
NT_008166 | AC067871 | 70348379 | 2 | chr8 | NT_008166 | AC090096 | 70529497 | 3 | 14017 | 0 | 0 | 14017 |
| S/G/Y/R/B/O |
NT_008166 | AC067871 | 70348379 | 2 |   |   | AC016519 | 70348379 | 1 | 107727 | 0 | 0 | 107727 |
| S/G/Y/R/B/O |
NT_008166 | AC090096 | 70529497 | 3 | chr8 | NT_008166 | AC011884 | 70688599 | 3 | 85327 | 0 | 0 | 85327 |
| S/G/Y/R/B/O |
NT_008166 | AC090096 | 70529497 | 3 |   |   | AC016519 | 30866905 | 1 | 64094 | 0 | 0 | 64094 |
| S/G/Y/R/B/O |
NT_008166 | AC011884 | 70688599 | 3 | chr8 | NT_008166 | AC083967 | 70766048 | 3 | 3012 | 0 | 0 | 3012 |
| S/G/Y/R/B/O |
NT_008166 | AC083967 | 70766048 | 3 | chr8 | NT_008166 | AC090717 | 70933277 | 3 | 110627 | 0 | 0 | 110627 |
| S/G/Y/R/B/O |
NT_008166 | AC083967 | 70766048 | 3 |   |   | AF215842 | 70933277 | 1 | 85614 | 0 | 9258 | 94872 |
| S/G/Y/R/B/O |
NT_008166 | AC090717 | 70933277 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008166 | AC090717 | 70933277 | 3 |   |   | AF215842 | 70766048 | 1 | 81949 | 0 | 6181 | 88130 |
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