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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008183 | AC068553 | 65166522 | 1 | chr8 | NT_008183 | AC091563 | 65166926 | 2 | 84285 | 15617 | 59300 | 159202 |
| S/G/Y/R/B/O |
NT_008183 | AC068553 | 65166522 | 1 | chr8 | NT_008183 | AC090736 | 65323395 | 2 | 13559 | 1662 | 20404 | 35625 |
| S/G/Y/R/B/O |
NT_008183 | AC091563 | 65166926 | 2 | chr8 | NT_008183 | AC090736 | 65323395 | 2 | 48400 | 0 | 0 | 48400 |
| S/G/Y/R/B/O |
NT_008183 | AC090736 | 65323395 | 2 | chr8 | NT_008183 | AC020603 | 65469227 | 3 | 47456 | 0 | 0 | 47456 |
| S/G/Y/R/B/O |
NT_008183 | AC090736 | 65323395 | 2 | chr8 | NT_008183 | AC068553 | 65166522 | 1 | 13559 | 1662 | 20404 | 35625 |
| S/G/Y/R/B/O |
NT_008183 | AC020603 | 65469227 | 3 | chr8 | NT_008183 | AC068075 | 65634056 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008183 | AC020603 | 65469227 | 3 | chr8 | NT_031821 | AC107877 | 123919781 | 2 | 28164 | 0 | 0 | 28164 |
| S/G/Y/R/B/O |
NT_008183 | AC068075 | 65634056 | 2 | chr8 | NT_008183 | AC073430 | 65638541 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008183 | AC068075 | 65634056 | 2 | chr8 | NT_008183 | AC090796 | 65792596 | 1 | 59260 | 2160 | 0 | 61420 |
| S/G/Y/R/B/O |
NT_008183 | AC073430 | 65638541 | 1 | chr8 | NT_008183 | AC090796 | 65792596 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008183 | AC073430 | 65638541 | 1 | chr8 | NT_008183 | AC024249 | 66930071 | 1 | 50869 | 4817 | 626 | 56312 |
| S/G/Y/R/B/O |
NT_008183 | AC073430 | 65638541 | 1 | chr8 | NT_008183 | AC084837 | 67198662 | 2 | 32727 | 4860 | 24068 | 61655 |
| S/G/Y/R/B/O |
NT_008183 | AC073430 | 65638541 | 1 | chr8 | NT_008183 | AC091195 | 67023065 | 3 | 114819 | 7206 | 24086 | 146111 |
| S/G/Y/R/B/O |
NT_008183 | AC073430 | 65638541 | 1 | chr8 | NT_008183 | AC092700 | 66912892 | 1 | 53370 | 2342 | 6150 | 61862 |
| S/G/Y/R/B/O |
NT_008183 | AC073430 | 65638541 | 1 | chr8 | NT_008183 | AC105150 | 67240770 | 3 | 20507 | 2176 | 5245 | 27928 |
| S/G/Y/R/B/O |
NT_008183 | AC073430 | 65638541 | 1 |   |   | AC017049 | 65792596 | 1 | 16700 | 2176 | 5229 | 24105 |
| S/G/Y/R/B/O |
NT_008183 | AC090796 | 65792596 | 1 | chr8 | NT_008183 | AC091561 | 65794811 | 2 | 108296 | 0 | 0 | 108296 |
| S/G/Y/R/B/O |
NT_008183 | AC090796 | 65792596 | 1 | chr8 | NT_008183 | AC068075 | 65634056 | 2 | 59260 | 2160 | 0 | 61420 |
| S/G/Y/R/B/O |
NT_008183 | AC090796 | 65792596 | 1 |   |   | AC018681 | 67240770 | 1 | 56207 | 1642 | 50108 | 107957 |
| S/G/Y/R/B/O |
NT_008183 | AC091561 | 65794811 | 2 | chr8 | NT_008183 | AC104051 | 65975505 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008183 | AC091561 | 65794811 | 2 |   |   | AC018681 | 48109111 | 1 | 105293 | 1721 | 82547 | 189561 |
| S/G/Y/R/B/O |
NT_008183 | AC104051 | 65975505 | 3 | chr8 | NT_008183 | AC103842 | 66096228 | 3 | 63673 | 0 | 0 | 63673 |
| S/G/Y/R/B/O |
NT_008183 | AC104051 | 65975505 | 3 |   |   | AC018681 | 48109111 | 1 | 10329 | 0 | 0 | 10329 |
| S/G/Y/R/B/O |
NT_008183 | AC103842 | 66096228 | 3 | chr8 | NT_008183 | AC012103 | 66182959 | 3 | 59547 | 0 | 0 | 59547 |
| S/G/Y/R/B/O |
NT_008183 | AC012103 | 66182959 | 3 | chr8 | NT_008183 | AC016038 | 66280719 | 1 | 100866 | 1753 | 0 | 102619 |
| S/G/Y/R/B/O |
NT_008183 | AC016038 | 66280719 | 1 | chr8 | NT_008183 | AF286887 | 66345483 | 1 | 66623 | 0 | 0 | 66623 |
| S/G/Y/R/B/O |
NT_008183 | AC016038 | 66280719 | 1 |   |   | AC104350 | 66096228 | 2 | 49013 | 0 | 0 | 49013 |
| S/G/Y/R/B/O |
NT_008183 | AF286887 | 66345483 | 1 | chr8 | NT_008183 | AC027698 | 66388625 | 3 | 83141 | 0 | 0 | 83141 |
| S/G/Y/R/B/O |
NT_008183 | AF286887 | 66345483 | 1 | chr8 | NT_008183 | AF189005 | 66486365 | 1 | 18257 | 0 | 0 | 18257 |
| S/G/Y/R/B/O |
NT_008183 | AF286887 | 66345483 | 1 |   |   | AC104350 | 66388625 | 2 | 153976 | 0 | 0 | 153976 |
| S/G/Y/R/B/O |
NT_008183 | AC027698 | 66388625 | 3 | chr8 | NT_008183 | AC110013 | 66486320 | 2 | 26763 | 1673 | 0 | 28436 |
| S/G/Y/R/B/O |
NT_008183 | AC027698 | 66388625 | 3 | chr8 | NT_008183 | AF189005 | 66486365 | 1 | 32727 | 0 | 0 | 32727 |
| S/G/Y/R/B/O |
NT_008183 | AC027698 | 66388625 | 3 |   |   | AC104350 | 66486365 | 2 | 35983 | 0 | 0 | 35983 |
| S/G/Y/R/B/O |
NT_008183 | AC110013 | 66486320 | 2 | chr8 | NT_008183 | AF189005 | 66486365 | 1 | 116086 | 1712 | 0 | 117798 |
| S/G/Y/R/B/O |
NT_008183 | AC110013 | 66486320 | 2 | chr8 | NT_008183 | AC092819 | 66574064 | 1 | 17486 | 4432 | 0 | 21918 |
| S/G/Y/R/B/O |
NT_008183 | AF189005 | 66486365 | 1 | chr8 | NT_008183 | AC092819 | 66574064 | 1 | 17484 | 4432 | 0 | 21916 |
| S/G/Y/R/B/O |
NT_008183 | AF189005 | 66486365 | 1 | chr8 | NT_008183 | AC027698 | 66388625 | 3 | 32727 | 0 | 0 | 32727 |
| S/G/Y/R/B/O |
NT_008183 | AF189005 | 66486365 | 1 | chr8 | NT_008183 | AF286887 | 66345483 | 1 | 18257 | 0 | 0 | 18257 |
| S/G/Y/R/B/O |
NT_008183 | AC092819 | 66574064 | 1 | chr8 | NT_008183 | AC020782 | 66639349 | 2 | 50096 | 6871 | 5373 | 62340 |
| S/G/Y/R/B/O |
NT_008183 | AC092819 | 66574064 | 1 | chr8 | NT_008183 | AC110013 | 66486320 | 2 | 17486 | 4432 | 0 | 21918 |
| S/G/Y/R/B/O |
NT_008183 | AC020782 | 66639349 | 2 | chr8 | NT_008183 | AC009927 | 66733622 | 2 | 124179 | 0 | 0 | 124179 |
| S/G/Y/R/B/O |
NT_008183 | AC009927 | 66733622 | 2 | chr8 | NT_008183 | AC068522 | 66868117 | 1 | 52451 | 0 | 14517 | 66968 |
| S/G/Y/R/B/O |
NT_008183 | AC068522 | 66868117 | 1 | chr8 | NT_008183 | AC092700 | 66912892 | 1 | 41154 | 0 | 0 | 41154 |
| S/G/Y/R/B/O |
NT_008183 | AC068522 | 66868117 | 1 | chr8 | NT_008183 | AC024249 | 66930071 | 1 | 30446 | 0 | 13265 | 43711 |
| S/G/Y/R/B/O |
NT_008183 | AC092700 | 66912892 | 1 | chr8 | NT_008183 | AC024249 | 66930071 | 1 | 79788 | 18464 | 16061 | 114313 |
| S/G/Y/R/B/O |
NT_008183 | AC092700 | 66912892 | 1 | chr8 | NT_008183 | AC073430 | 65638541 | 1 | 53370 | 2342 | 6150 | 61862 |
| S/G/Y/R/B/O |
NT_008183 | AC092700 | 66912892 | 1 | chr8 | NT_008183 | AC084837 | 67198662 | 2 | 22338 | 1860 | 0 | 24198 |
| S/G/Y/R/B/O |
NT_008183 | AC092700 | 66912892 | 1 | chr8 | NT_008183 | AC091195 | 67023065 | 3 | 113058 | 0 | 0 | 113058 |
| S/G/Y/R/B/O |
NT_008183 | AC024249 | 66930071 | 1 | chr8 | NT_008183 | AC091195 | 67023065 | 3 | 86294 | 11568 | 1994 | 99856 |
| S/G/Y/R/B/O |
NT_008183 | AC024249 | 66930071 | 1 | chr8 | NT_008183 | AC068522 | 66868117 | 1 | 30446 | 0 | 13265 | 43711 |
| S/G/Y/R/B/O |
NT_008183 | AC024249 | 66930071 | 1 | chr8 | NT_008183 | AC073430 | 65638541 | 1 | 50869 | 4817 | 626 | 56312 |
| S/G/Y/R/B/O |
NT_008183 | AC024249 | 66930071 | 1 | chr8 | NT_008183 | AC084837 | 67198662 | 2 | 28961 | 2990 | 1367 | 33318 |
| S/G/Y/R/B/O |
NT_008183 | AC091195 | 67023065 | 3 | chr8 | NT_008183 | AC084837 | 67198662 | 2 | 97354 | 0 | 0 | 97354 |
| S/G/Y/R/B/O |
NT_008183 | AC091195 | 67023065 | 3 | chr8 | NT_008183 | AC073430 | 65638541 | 1 | 114819 | 7206 | 24086 | 146111 |
| S/G/Y/R/B/O |
NT_008183 | AC091195 | 67023065 | 3 | chr8 | NT_008183 | AC092700 | 66912892 | 1 | 113058 | 0 | 0 | 113058 |
| S/G/Y/R/B/O |
NT_008183 | AC091195 | 67023065 | 3 | chr8 | NT_008183 | AC105150 | 67240770 | 3 | 28149 | 0 | 0 | 28149 |
| S/G/Y/R/B/O |
NT_008183 | AC091195 | 67023065 | 3 |   |   | AC017049 | 66912892 | 1 | 24863 | 0 | 0 | 24863 |
| S/G/Y/R/B/O |
NT_008183 | AC084837 | 67198662 | 2 | chr8 | NT_008183 | AC105150 | 67240770 | 3 | 70212 | 0 | 0 | 70212 |
| S/G/Y/R/B/O |
NT_008183 | AC084837 | 67198662 | 2 | chr8 | NT_008183 | AC024249 | 66930071 | 1 | 28961 | 2990 | 1367 | 33318 |
| S/G/Y/R/B/O |
NT_008183 | AC084837 | 67198662 | 2 | chr8 | NT_008183 | AC073430 | 65638541 | 1 | 32727 | 4860 | 24068 | 61655 |
| S/G/Y/R/B/O |
NT_008183 | AC084837 | 67198662 | 2 | chr8 | NT_008183 | AC092700 | 66912892 | 1 | 22338 | 1860 | 0 | 24198 |
| S/G/Y/R/B/O |
NT_008183 | AC084837 | 67198662 | 2 |   |   | AC017049 | 67240770 | 1 | 45282 | 0 | 0 | 45282 |
| S/G/Y/R/B/O |
NT_008183 | AC105150 | 67240770 | 3 | chr8 | NT_008183 | AC090152 | 67371517 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008183 | AC105150 | 67240770 | 3 | chr8 | NT_008183 | AC073430 | 65638541 | 1 | 20507 | 2176 | 5245 | 27928 |
| S/G/Y/R/B/O |
NT_008183 | AC105150 | 67240770 | 3 | chr8 | NT_008183 | AC091195 | 67023065 | 3 | 28149 | 0 | 0 | 28149 |
| S/G/Y/R/B/O |
NT_008183 | AC105150 | 67240770 | 3 |   |   | AC010353 | 67240770 | 1 | 19609 | 0 | 0 | 19609 |
| S/G/Y/R/B/O |
NT_008183 | AC105150 | 67240770 | 3 |   |   | AC017049 | 67240770 | 1 | 199851 | 0 | 0 | 199851 |
| S/G/Y/R/B/O |
NT_008183 | AC090152 | 67371517 | 3 | chr8 | NT_008183 | AL513406 | 67399697 | 3 | 78174 | 0 | 0 | 78174 |
| S/G/Y/R/B/O |
NT_008183 | AC090152 | 67371517 | 3 |   |   | AC010353 | 67023065 | 1 | 88583 | 1903 | 21630 | 112116 |
| S/G/Y/R/B/O |
NT_008183 | AC090152 | 67371517 | 3 |   |   | AC017049 | 67023065 | 1 | 12318 | 0 | 0 | 12318 |
| S/G/Y/R/B/O |
NT_008183 | AC090152 | 67371517 | 3 |   |   | AC020605 | 67023065 | 1 | 98717 | 0 | 1830 | 100547 |
| S/G/Y/R/B/O |
NT_008183 | AC090152 | 67371517 | 3 |   |   | AC087698 | 67023065 | 1 | 15954 | 0 | 0 | 15954 |
| S/G/Y/R/B/O |
NT_008183 | AL513406 | 67399697 | 3 | chr8 | NT_008183 | AC083934 | 67604592 | 2 | 99205 | 0 | 0 | 99205 |
| S/G/Y/R/B/O |
NT_008183 | AL513406 | 67399697 | 3 |   |   | AC010353 | 67399697 | 1 | 55545 | 1904 | 7124 | 64573 |
| S/G/Y/R/B/O |
NT_008183 | AL513406 | 67399697 | 3 |   |   | AC020605 | 67399697 | 1 | 64617 | 0 | 1828 | 66445 |
| S/G/Y/R/B/O |
NT_008183 | AL513406 | 67399697 | 3 |   |   | AC087698 | 67604592 | 1 | 142423 | 0 | 1214 | 143637 |
| S/G/Y/R/B/O |
NT_008183 | AC083934 | 67604592 | 2 | chr8 | NT_008183 | AC104976 | 67663021 | 2 | 43211 | 0 | 0 | 43211 |
| S/G/Y/R/B/O |
NT_008183 | AC083934 | 67604592 | 2 |   |   | AC087698 | 67371517 | 1 | 78747 | 0 | 0 | 78747 |
| S/G/Y/R/B/O |
NT_008183 | AC104976 | 67663021 | 2 | chr8 | NT_008183 | AC068394 | 67780559 | 2 | 51662 | 0 | 0 | 51662 |
| S/G/Y/R/B/O |
NT_008183 | AC068394 | 67780559 | 2 |   |   |   |   |   |   |   |   |   |
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