Chromosome 8 - Clone Overlaps

Chromosome 8 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_008060	NT_023779	NT_023744	NT_008227	NT_023736	NT_019483	NT_008010	NT_008161
NT_015280	NT_030737	NT_023704	NT_008205	NT_008300	NT_023666	NT_033187	NT_033199
NT_007988	NT_007993	NT_030743	NT_033201	NT_007995	NT_026349	NT_033197	NT_008251
NT_008045	NT_008176	NT_017505	NT_008216	NT_023678	NT_023878	NT_017431	NT_023806
NT_023679	NT_008201	NT_023727	NT_033189	NT_023795	NT_008014	NT_008101	NT_008050
NT_008231	NT_008026	NT_023673	NT_029343	NT_033186	NT_008218	NT_023672	NT_030735
NT_023660	NT_008183	NT_008166	NT_023676	NT_023821	NT_023732	NT_008209	NT_008055
NT_008186	NT_008292	NT_007972	NT_023682	NT_008117	NT_023717	NT_008007	NT_023693
NT_008059	NT_008046	NT_008144	NT_033198	NT_008048	NT_033200	NT_023670	NT_008289
NT_023742	NT_023811	NT_031821	NT_023705	NT_023663	NT_033191	NT_033195	NT_008157
NT_023726	NT_033196	NT_008023	NT_023715	NT_030744	NT_023709	NT_030741	NT_008150
NT_025796	NT_007994	NT_028251	NT_023662	NT_033193	NT_023838	NT_008104	NT_033185
NT_027068	NT_030032	NT_033192	NT_008127	NT_033194	NT_023747	NT_023684	NT_031818

NT_008292

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_008292	AC110025	81074112	2	chr8	NT_008292	AC073282	81109498	1	11598	0	25082	36680
S/G/Y/R/B/O	NT_008292	AC110025	81074112	2	chr8	NT_023682	AC069359	87667653	3	36875	0	0	36875
S/G/Y/R/B/O	NT_008292	AC110025	81074112	2	chr8	NT_008292	AC091192	81191842	1	36248	4226	0	40474
S/G/Y/R/B/O	NT_008292	AC073282	81109498	1	chr8	NT_008292	AC091192	81191842	1	89497	6796	75676	171969
S/G/Y/R/B/O	NT_008292	AC091192	81191842	1	chr8	NT_008292	AC105031	81333053	3	6117	0	0	6117
S/G/Y/R/B/O	NT_008292	AC091192	81191842	1	chr8	NT_008292	AC110025	81074112	2	36248	4226	0	40474
S/G/Y/R/B/O	NT_008292	AC105031	81333053	3	chr8	NT_008292	AC018443	81444380	2	54308	0	0	54308
S/G/Y/R/B/O	NT_008292	AC018443	81444380	2	chr8	NT_008292	AC090095	81589731	3	166813	0	0	166813
S/G/Y/R/B/O	NT_008292	AC090095	81589731	3	chr8	NT_008292	AC090132	81616991	3	0	0	0	0
S/G/Y/R/B/O	NT_008292	AC090095	81589731	3			AC069139	81444380	1	11257	0	0	11257
S/G/Y/R/B/O	NT_008292	AC090132	81616991	3	chr8	NT_008292	AC022821	81810565	3	43232	0	0	43232
S/G/Y/R/B/O	NT_008292	AC090132	81616991	3			AC069139	81810565	1	189185	2204	12859	204248
S/G/Y/R/B/O	NT_008292	AC022821	81810565	3	chr8	NT_008292	AC016879	81938972	3	89474	0	0	89474
S/G/Y/R/B/O	NT_008292	AC022821	81810565	3			AC069139	81938972	1	28432	0	12840	41272
S/G/Y/R/B/O	NT_008292	AC016879	81938972	3	chr8	NT_008292	AC087209	82032053	3	57237	0	0	57237
S/G/Y/R/B/O	NT_008292	AC016879	81938972	3			AC024254	81810565	1	54221	4538	31057	89816
S/G/Y/R/B/O	NT_008292	AC087209	82032053	3	chr8	NT_008292	AC104013	82118909	3	38742	0	0	38742
S/G/Y/R/B/O	NT_008292	AC087209	82032053	3			AC024254	81938972	1	106995	10713	14710	132418
S/G/Y/R/B/O	NT_008292	AC104013	82118909	3	chr8	NT_008292	AC104425	82238455	3	17826	0	0	17826
S/G/Y/R/B/O	NT_008292	AC104013	82118909	3			AC024254	82118909	1	34022	4240	0	38262
S/G/Y/R/B/O	NT_008292	AC104425	82238455	3	chr8	NT_008292	AC015522	82360982	3	2226	0	0	2226
S/G/Y/R/B/O	NT_008292	AC015522	82360982	3	chr8	NT_008292	AC104940	82505779	3	135016	0	0	135016
S/G/Y/R/B/O	NT_008292	AC104940	82505779	3	chr8	NT_008292	AC012400	82586724	3	61131	0	0	61131
S/G/Y/R/B/O	NT_008292	AC012400	82586724	3	chr8	NT_008292	AC024698	82704248	1	3723	0	0	3723
S/G/Y/R/B/O	NT_008292	AC024698	82704248	1	chr8	NT_008292	AC104012	82766386	2	0	0	0	0
S/G/Y/R/B/O	NT_008292	AC024698	82704248	1	chr8	NT_008292	AC092699	84054176	1	18691	5407	57040	81138
S/G/Y/R/B/O	NT_008292	AC104012	82766386	2	chr8	NT_008292	AC022867	82770224	3	56619	0	0	56619
S/G/Y/R/B/O	NT_008292	AC022867	82770224	3	chr8	NT_008292	AC016057	82967155	3	126239	0	0	126239
S/G/Y/R/B/O	NT_008292	AC016057	82967155	3	chr8	NT_008292	AC078906	83038700	3	52561	0	0	52561
S/G/Y/R/B/O	NT_008292	AC078906	83038700	3	chr8	NT_008292	AC022905	83142502	3	37211	0	0	37211
S/G/Y/R/B/O	NT_008292	AC022905	83142502	3	chr8	NT_008292	AC011003	83289582	3	80088	0	0	80088
S/G/Y/R/B/O	NT_008292	AC022905	83142502	3	chr5	NT_007072	AC023171	139495907	1	10534	2128	0	12662
S/G/Y/R/B/O	NT_008292	AC022905	83142502	3			AC090254	83038700	1	73379	0	0	73379
S/G/Y/R/B/O	NT_008292	AC011003	83289582	3	chr8	NT_008292	AC073661	83398522	2	148138	0	0	148138
S/G/Y/R/B/O	NT_008292	AC011003	83289582	3			AC090254	83398522	1	141001	0	1445	142446
S/G/Y/R/B/O	NT_008292	AC073661	83398522	2	chr8	NT_008292	AC011131	83448789	1	90640	0	0	90640
S/G/Y/R/B/O	NT_008292	AC073661	83398522	2			AC090254	83471260	1	96057	0	1442	97499
S/G/Y/R/B/O	NT_008292	AC011131	83448789	1	chr8	NT_008292	AC024297	83471260	1	80892	0	1836	82728
S/G/Y/R/B/O	NT_008292	AC011131	83448789	1	chr8	NT_008292	AC022881	83519406	3	17441	0	0	17441
S/G/Y/R/B/O	NT_008292	AC011131	83448789	1			AC090254	83398522	1	40290	0	0	40290
S/G/Y/R/B/O	NT_008292	AC024297	83471260	1	chr8	NT_008292	AC022881	83519406	3	51839	2602	1254	55695
S/G/Y/R/B/O	NT_008292	AC022881	83519406	3	chr8	NT_008292	AC013562	83583426	2	2001	0	0	2001
S/G/Y/R/B/O	NT_008292	AC022881	83519406	3	chr8	NT_008292	AC011131	83448789	1	17441	0	0	17441
S/G/Y/R/B/O	NT_008292	AC013562	83583426	2	chr8	NT_008292	AC090735	83770178	3	76052	0	0	76052
S/G/Y/R/B/O	NT_008292	AC013562	83583426	2			AC091875	83770178	1	81091	0	4085	85176
S/G/Y/R/B/O	NT_008292	AC090735	83770178	3	chr8	NT_008292	AC022893	83843122	2	3666	0	0	3666
S/G/Y/R/B/O	NT_008292	AC090735	83770178	3			AC087818	83843122	1	13760	18589	21310	53659
S/G/Y/R/B/O	NT_008292	AC090735	83770178	3			AC091875	83843122	1	10319	0	0	10319
S/G/Y/R/B/O	NT_008292	AC022893	83843122	2	chr8	NT_008292	AC092699	84054176	1	0	0	0	0
S/G/Y/R/B/O	NT_008292	AC022893	83843122	2			AF164115	83770178	1	56208	0	37909	94117
S/G/Y/R/B/O	NT_008292	AC022893	83843122	2			AF301505	83770178	1	36201	0	19594	55795
S/G/Y/R/B/O	NT_008292	AC092699	84054176	1	chr8	NT_008292	AC022273	84070205	1	59412	0	103981	163393
S/G/Y/R/B/O	NT_008292	AC092699	84054176	1	chr8	NT_008292	AC023116	84070633	1	75535	1577	7581	84693
S/G/Y/R/B/O	NT_008292	AC092699	84054176	1	chr8	NT_008292	AC024698	82704248	1	18691	5407	57040	81138
S/G/Y/R/B/O	NT_008292	AC092699	84054176	1	chr8	NT_008292	AC027043	84121754	2	74486	0	60855	135341
S/G/Y/R/B/O	NT_008292	AC092699	84054176	1	chr8	NT_008292	AC074371	84076497	1	18191	4277	1768	24236
S/G/Y/R/B/O	NT_008292	AC092699	84054176	1	chr8	NT_008292	AC090569	84277575	3	39123	0	60873	99996
S/G/Y/R/B/O	NT_008292	AC092699	84054176	1	chr8	NT_008292	AC092709	84081417	1	16119	0	1550	17669
S/G/Y/R/B/O	NT_008292	AC022273	84070205	1	chr8	NT_008292	AC023116	84070633	1	80453	0	7581	88034
S/G/Y/R/B/O	NT_008292	AC022273	84070205	1	chr8	NT_008292	AC074371	84076497	1	18191	4277	1742	24210
S/G/Y/R/B/O	NT_008292	AC022273	84070205	1	chr8	NT_008292	AC090569	84277575	3	106350	0	0	106350
S/G/Y/R/B/O	NT_008292	AC022273	84070205	1	chr8	NT_008292	AC092709	84081417	1	16119	0	1550	17669
S/G/Y/R/B/O	NT_008292	AC023116	84070633	1	chr8	NT_008292	AC074371	84076497	1	14408	8668	18546	41622
S/G/Y/R/B/O	NT_008292	AC023116	84070633	1	chr8	NT_008292	AC027043	84121754	2	75683	1578	20152	97413
S/G/Y/R/B/O	NT_008292	AC023116	84070633	1	chr8	NT_008292	AC090569	84277575	3	136586	4455	20142	161183
S/G/Y/R/B/O	NT_008292	AC023116	84070633	1	chr8	NT_008292	AC092699	84054176	1	75535	1577	7581	84693
S/G/Y/R/B/O	NT_008292	AC023116	84070633	1	chr8	NT_008292	AC092709	84081417	1	23090	0	0	23090
S/G/Y/R/B/O	NT_008292	AC023116	84070633	1			AC084257	84076497	3	53820	0	12529	66349
S/G/Y/R/B/O	NT_008292	AC074371	84076497	1	chr8	NT_008292	AC092709	84081417	1	61251	20951	24941	107143
S/G/Y/R/B/O	NT_008292	AC074371	84076497	1	chr8	NT_008292	AC022273	84070205	1	18191	4277	1742	24210
S/G/Y/R/B/O	NT_008292	AC074371	84076497	1	chr8	NT_008292	AC027043	84121754	2	18179	10559	1741	30479
S/G/Y/R/B/O	NT_008292	AC074371	84076497	1	chr8	NT_008292	AC087368	84331724	2	27852	14026	11951	53829
S/G/Y/R/B/O	NT_008292	AC074371	84076497	1	chr8	NT_008292	AC090569	84277575	3	43364	10559	27990	81913
S/G/Y/R/B/O	NT_008292	AC074371	84076497	1	chr8	NT_008292	AC092699	84054176	1	18191	4277	1768	24236
S/G/Y/R/B/O	NT_008292	AC074371	84076497	1			AC024197	43274999	1	40475	12047	14729	67251
S/G/Y/R/B/O	NT_008292	AC074371	84076497	1			AC084257	84121754	3	31427	10564	25512	67503
S/G/Y/R/B/O	NT_008292	AC074371	84076497	1			AC092292	84277575	1	12201	9975	10630	32806
S/G/Y/R/B/O	NT_008292	AC092709	84081417	1	chr8	NT_008292	AC027043	84121754	2	16108	2465	1549	20122
S/G/Y/R/B/O	NT_008292	AC092709	84081417	1	chr8	NT_008292	AC022273	84070205	1	16119	0	1550	17669
S/G/Y/R/B/O	NT_008292	AC092709	84081417	1	chr8	NT_008292	AC023116	84070633	1	23090	0	0	23090
S/G/Y/R/B/O	NT_008292	AC092709	84081417	1	chr8	NT_008292	AC087368	84331724	2	62184	1547	0	63731
S/G/Y/R/B/O	NT_008292	AC092709	84081417	1	chr8	NT_008292	AC090569	84277575	3	64276	2465	1549	68290
S/G/Y/R/B/O	NT_008292	AC092709	84081417	1	chr8	NT_008292	AC092699	84054176	1	16119	0	1550	17669
S/G/Y/R/B/O	NT_008292	AC092709	84081417	1			AC024197	43274999	1	49850	1369	0	51219
S/G/Y/R/B/O	NT_008292	AC092709	84081417	1			AC084257	84076497	3	62838	2466	0	65304
S/G/Y/R/B/O	NT_008292	AC092709	84081417	1			AC092292	84277575	1	13749	1547	0	15296
S/G/Y/R/B/O	NT_008292	AC027043	84121754	2	chr8	NT_008292	AC090569	84277575	3	120407	0	0	120407
S/G/Y/R/B/O	NT_008292	AC027043	84121754	2	chr8	NT_008292	AC023116	84070633	1	75683	1578	20152	97413
S/G/Y/R/B/O	NT_008292	AC027043	84121754	2	chr8	NT_008292	AC074371	84076497	1	18179	10559	1741	30479
S/G/Y/R/B/O	NT_008292	AC027043	84121754	2	chr8	NT_008292	AC092699	84054176	1	74486	0	60855	135341
S/G/Y/R/B/O	NT_008292	AC090569	84277575	3	chr8	NT_008292	AC087368	84331724	2	0	0	0	0
S/G/Y/R/B/O	NT_008292	AC090569	84277575	3	chr8	NT_008292	AC022273	84070205	1	106350	0	0	106350
S/G/Y/R/B/O	NT_008292	AC090569	84277575	3	chr8	NT_008292	AC023116	84070633	1	136586	4455	20142	161183
S/G/Y/R/B/O	NT_008292	AC090569	84277575	3	chr8	NT_008292	AC074371	84076497	1	43364	10559	27990	81913
S/G/Y/R/B/O	NT_008292	AC090569	84277575	3	chr8	NT_008292	AC092699	84054176	1	39123	0	60873	99996
S/G/Y/R/B/O	NT_008292	AC090569	84277575	3	chr8	NT_008292	AC092709	84081417	1	64276	2465	1549	68290
S/G/Y/R/B/O	NT_008292	AC087368	84331724	2	chr8	NT_008292	AC083924	84513965	1	39580	0	0	39580
S/G/Y/R/B/O	NT_008292	AC087368	84331724	2	chr8	NT_008292	AC074371	84076497	1	27852	14026	11951	53829
S/G/Y/R/B/O	NT_008292	AC087368	84331724	2	chr8	NT_008292	AC092709	84081417	1	62184	1547	0	63731
S/G/Y/R/B/O	NT_008292	AC087368	84331724	2			AC024197	84081417	1	144089	8927	28043	181059
S/G/Y/R/B/O	NT_008292	AC087368	84331724	2			AC092292	84513965	1	35798	0	14329	50127
S/G/Y/R/B/O	NT_008292	AC083924	84513965	1	chr8	NT_008292	AC009901	84523297	3	136894	0	0	136894
S/G/Y/R/B/O	NT_008292	AC009901	84523297	3	chr8	NT_008292	AC091175	84662191	2	23397	0	0	23397
S/G/Y/R/B/O	NT_008292	AC009901	84523297	3	chr8	NT_008292	AC073192	84690621	1	15486	0	5910	21396
S/G/Y/R/B/O	NT_008292	AC091175	84662191	2	chr8	NT_008292	AC073192	84690621	1	29010	4289	35780	69079
S/G/Y/R/B/O	NT_008292	AC091175	84662191	2	chr8	NT_008292	AC083962	84775226	2	31302	0	0	31302
S/G/Y/R/B/O	NT_008292	AC073192	84690621	1	chr8	NT_008292	AC083962	84775226	2	38720	4606	15739	59065
S/G/Y/R/B/O	NT_008292	AC073192	84690621	1	chr8	NT_008292	AC009901	84523297	3	15486	0	5910	21396
S/G/Y/R/B/O	NT_008292	AC083962	84775226	2	chr8	NT_008292	AC011773	84854994	1	94563	0	0	94563
S/G/Y/R/B/O	NT_008292	AC083962	84775226	2	chr8	NT_008292	AC091175	84662191	2	31302	0	0	31302
S/G/Y/R/B/O	NT_008292	AC011773	84854994	1	chr8	NT_008292	AC025800	84985338	3	44205	0	0	44205
S/G/Y/R/B/O	NT_008292	AC025800	84985338	3
S/G/Y/R/B/O	NT_008292	AC025800	84985338	3			AC008862	84775226	3	63742	0	0	63742