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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008023 | AC027531 | 130467376 | 1 | chr8 | NT_008023 | AC018714 | 130469527 | 3 | 100773 | 0 | 0 | 100773 |
| S/G/Y/R/B/O |
NT_008023 | AC027531 | 130467376 | 1 | chr8 | NT_008023 | AC020688 | 130667479 | 2 | 30998 | 0 | 0 | 30998 |
| S/G/Y/R/B/O |
NT_008023 | AC027531 | 130467376 | 1 | chr8 | NT_008023 | AC083974 | 130586944 | 1 | 48274 | 1643 | 0 | 49917 |
| S/G/Y/R/B/O |
NT_008023 | AC027531 | 130467376 | 1 |   |   | AC073155 | 74910532 | 1 | 47664 | 2199 | 1894 | 51757 |
| S/G/Y/R/B/O |
NT_008023 | AC018714 | 130469527 | 3 | chr8 | NT_008023 | AC083974 | 130586944 | 1 | 58771 | 0 | 0 | 58771 |
| S/G/Y/R/B/O |
NT_008023 | AC018714 | 130469527 | 3 |   |   | AC073155 | 130467376 | 1 | 127670 | 2200 | 5369 | 135239 |
| S/G/Y/R/B/O |
NT_008023 | AC018714 | 130469527 | 3 |   |   | AC087753 | 130586944 | 1 | 19595 | 0 | 151413 | 171008 |
| S/G/Y/R/B/O |
NT_008023 | AC083974 | 130586944 | 1 | chr8 | NT_008023 | AC020688 | 130667479 | 2 | 70275 | 2001 | 0 | 72276 |
| S/G/Y/R/B/O |
NT_008023 | AC083974 | 130586944 | 1 | chr8 | NT_008023 | AC027531 | 130467376 | 1 | 48274 | 1643 | 0 | 49917 |
| S/G/Y/R/B/O |
NT_008023 | AC083974 | 130586944 | 1 |   |   | AC087753 | 130467376 | 1 | 47025 | 0 | 1316 | 48341 |
| S/G/Y/R/B/O |
NT_008023 | AC020688 | 130667479 | 2 | chr8 | NT_008023 | AC067843 | 130841075 | 3 | 25328 | 0 | 0 | 25328 |
| S/G/Y/R/B/O |
NT_008023 | AC020688 | 130667479 | 2 | chr8 | NT_008023 | AC027531 | 130467376 | 1 | 30998 | 0 | 0 | 30998 |
| S/G/Y/R/B/O |
NT_008023 | AC067843 | 130841075 | 3 | chr8 | NT_008023 | AC024382 | 131013463 | 1 | 24673 | 2319 | 0 | 26992 |
| S/G/Y/R/B/O |
NT_008023 | AC067843 | 130841075 | 3 |   |   | AC023955 | 130667479 | 2 | 160403 | 0 | 0 | 160403 |
| S/G/Y/R/B/O |
NT_008023 | AC024382 | 131013463 | 1 | chr8 | NT_008023 | AC024681 | 131079276 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008023 | AC024382 | 131013463 | 1 | chr8 | NT_008023 | AC083923 | 131686875 | 3 | 35132 | 0 | 0 | 35132 |
| S/G/Y/R/B/O |
NT_008023 | AC024681 | 131079276 | 2 | chr8 | NT_008023 | AC090573 | 131273763 | 1 | 31700 | 0 | 0 | 31700 |
| S/G/Y/R/B/O |
NT_008023 | AC024681 | 131079276 | 2 | chr8 | NT_008023 | AC024087 | 131299375 | 1 | 22069 | 3796 | 1357 | 27222 |
| S/G/Y/R/B/O |
NT_008023 | AC090573 | 131273763 | 1 | chr8 | NT_008023 | AC024087 | 131299375 | 1 | 165076 | 11790 | 7046 | 183912 |
| S/G/Y/R/B/O |
NT_008023 | AC090573 | 131273763 | 1 | chr8 | NT_008023 | AC087667 | 131415227 | 3 | 30690 | 0 | 0 | 30690 |
| S/G/Y/R/B/O |
NT_008023 | AC090573 | 131273763 | 1 | chr8 | NT_008023 | AF188028 | 131998862 | 1 | 16116 | 2795 | 0 | 18911 |
| S/G/Y/R/B/O |
NT_008023 | AC090573 | 131273763 | 1 | chr8 | NT_008023 | AF270510 | 131364213 | 2 | 62792 | 0 | 0 | 62792 |
| S/G/Y/R/B/O |
NT_008023 | AC024087 | 131299375 | 1 | chr8 | NT_008023 | AF270510 | 131364213 | 2 | 47184 | 2026 | 0 | 49210 |
| S/G/Y/R/B/O |
NT_008023 | AC024087 | 131299375 | 1 | chr8 | NT_008023 | AC024681 | 131079276 | 2 | 22069 | 3796 | 1357 | 27222 |
| S/G/Y/R/B/O |
NT_008023 | AC024087 | 131299375 | 1 | chr8 | NT_008023 | AC087667 | 131415227 | 3 | 10584 | 0 | 4506 | 15090 |
| S/G/Y/R/B/O |
NT_008023 | AC024087 | 131299375 | 1 | chr8 | NT_008023 | AF188028 | 131998862 | 1 | 10254 | 0 | 0 | 10254 |
| S/G/Y/R/B/O |
NT_008023 | AF270510 | 131364213 | 2 | chr8 | NT_008023 | AC087667 | 131415227 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008023 | AF270510 | 131364213 | 2 | chr8 | NT_008023 | AC090573 | 131273763 | 1 | 62792 | 0 | 0 | 62792 |
| S/G/Y/R/B/O |
NT_008023 | AC087667 | 131415227 | 3 | chr8 | NT_008023 | AF126403 | 131497398 | 2 | 90353 | 0 | 0 | 90353 |
| S/G/Y/R/B/O |
NT_008023 | AC087667 | 131415227 | 3 | chr8 | NT_008023 | AC024087 | 131299375 | 1 | 10584 | 0 | 4506 | 15090 |
| S/G/Y/R/B/O |
NT_008023 | AC087667 | 131415227 | 3 | chr8 | NT_008023 | AC090573 | 131273763 | 1 | 30690 | 0 | 0 | 30690 |
| S/G/Y/R/B/O |
NT_008023 | AC087667 | 131415227 | 3 | chr8 | NT_008023 | AF188028 | 131998862 | 1 | 163493 | 2796 | 0 | 166289 |
| S/G/Y/R/B/O |
NT_008023 | AF126403 | 131497398 | 2 | chr8 | NT_008023 | AC084116 | 131602396 | 1 | 71119 | 1643 | 1048 | 73810 |
| S/G/Y/R/B/O |
NT_008023 | AF126403 | 131497398 | 2 | chr8 | NT_008023 | AF188028 | 131998862 | 1 | 73491 | 0 | 0 | 73491 |
| S/G/Y/R/B/O |
NT_008023 | AC084116 | 131602396 | 1 | chr8 | NT_008023 | AC083923 | 131686875 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008023 | AC084116 | 131602396 | 1 | chr8 | NT_008023 | AC021396 | 131722006 | 2 | 80283 | 0 | 0 | 80283 |
| S/G/Y/R/B/O |
NT_008023 | AC083923 | 131686875 | 3 | chr8 | NT_008023 | AC021396 | 131722006 | 2 | 127627 | 0 | 0 | 127627 |
| S/G/Y/R/B/O |
NT_008023 | AC083923 | 131686875 | 3 | chr8 | NT_008023 | AC024382 | 131013463 | 1 | 35132 | 0 | 0 | 35132 |
| S/G/Y/R/B/O |
NT_008023 | AC021396 | 131722006 | 2 | chr8 | NT_008023 | AF188028 | 131998862 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008023 | AC021396 | 131722006 | 2 | chr8 | NT_008023 | AC084116 | 131602396 | 1 | 80283 | 0 | 0 | 80283 |
| S/G/Y/R/B/O |
NT_008023 | AF188028 | 131998862 | 1 | chr8 | NT_008023 | AC104370 | 132004824 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008023 | AF188028 | 131998862 | 1 | chr8 | NT_008023 | AC024087 | 131299375 | 1 | 10254 | 0 | 0 | 10254 |
| S/G/Y/R/B/O |
NT_008023 | AF188028 | 131998862 | 1 | chr8 | NT_008023 | AC087667 | 131415227 | 3 | 163493 | 2796 | 0 | 166289 |
| S/G/Y/R/B/O |
NT_008023 | AF188028 | 131998862 | 1 | chr8 | NT_008023 | AC090573 | 131273763 | 1 | 16116 | 2795 | 0 | 18911 |
| S/G/Y/R/B/O |
NT_008023 | AF188028 | 131998862 | 1 | chr8 | NT_008023 | AF126403 | 131497398 | 2 | 73491 | 0 | 0 | 73491 |
| S/G/Y/R/B/O |
NT_008023 | AC104370 | 132004824 | 2 | chr8 | NT_008023 | AC108925 | 132106219 | 2 | 20313 | 0 | 14821 | 35134 |
| S/G/Y/R/B/O |
NT_008023 | AC104370 | 132004824 | 2 |   |   | AC016883 | 80896245 | 2 | 18151 | 0 | 0 | 18151 |
| S/G/Y/R/B/O |
NT_008023 | AC108925 | 132106219 | 2 | chr8 | NT_008023 | AF315312 | 132190118 | 1 | 46231 | 0 | 1937 | 48168 |
| S/G/Y/R/B/O |
NT_008023 | AF315312 | 132190118 | 1 | chr8 | NT_008023 | AC084123 | 132351042 | 1 | 7265 | 0 | 0 | 7265 |
| S/G/Y/R/B/O |
NT_008023 | AF315312 | 132190118 | 1 |   |   | X00364 | 132106219 | 3 | 10989 | 0 | 0 | 10989 |
| S/G/Y/R/B/O |
NT_008023 | AF315312 | 132190118 | 1 |   |   | Z46773 | 132106219 | 3 | 20507 | 0 | 0 | 20507 |
| S/G/Y/R/B/O |
NT_008023 | AC084123 | 132351042 | 1 | chr8 | NT_008023 | AC009790 | 132365546 | 1 | 0 | 0 | 1218 | 1218 |
| S/G/Y/R/B/O |
NT_008023 | AC009790 | 132365546 | 1 | chr8 | NT_008023 | AC026248 | 132500404 | 3 | 6290 | 0 | 0 | 6290 |
| S/G/Y/R/B/O |
NT_008023 | AC026248 | 132500404 | 3 | chr8 | NT_008023 | AC007860 | 132624399 | 3 | 89964 | 0 | 0 | 89964 |
| S/G/Y/R/B/O |
NT_008023 | AC026248 | 132500404 | 3 | chr8 | NT_029343 | AF303736 | 59864113 | 1 | 65801 | 0 | 5666 | 71467 |
| S/G/Y/R/B/O |
NT_008023 | AC026248 | 132500404 | 3 |   |   | AC021071 | 60054750 | 1 | 41390 | 0 | 25136 | 66526 |
| S/G/Y/R/B/O |
NT_008023 | AC026248 | 132500404 | 3 |   |   | AC084089 | 60054750 | 1 | 62138 | 0 | 58334 | 120472 |
| S/G/Y/R/B/O |
NT_008023 | AC007860 | 132624399 | 3 | chr8 | NT_008023 | AC100822 | 132720727 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008023 | AC007860 | 132624399 | 3 | chr8 | NT_029343 | AF303736 | 59864113 | 1 | 84576 | 0 | 5666 | 90242 |
| S/G/Y/R/B/O |
NT_008023 | AC007860 | 132624399 | 3 |   |   | AC021071 | 60054750 | 1 | 115416 | 0 | 44178 | 159594 |
| S/G/Y/R/B/O |
NT_008023 | AC007860 | 132624399 | 3 |   |   | AC084089 | 132500404 | 1 | 70911 | 0 | 0 | 70911 |
| S/G/Y/R/B/O |
NT_008023 | AC007860 | 132624399 | 3 |   |   | AC090776 | 132500404 | 3 | 88598 | 0 | 0 | 88598 |
| S/G/Y/R/B/O |
NT_008023 | AC007860 | 132624399 | 3 |   |   | AF188026 | 132500404 | 2 | 60406 | 0 | 0 | 60406 |
| S/G/Y/R/B/O |
NT_008023 | AC100822 | 132720727 | 3 | chr8 | NT_008023 | AC067844 | 132879443 | 2 | 10991 | 0 | 0 | 10991 |
| S/G/Y/R/B/O |
NT_008023 | AC100822 | 132720727 | 3 |   |   | AC090776 | 132879443 | 3 | 40020 | 0 | 0 | 40020 |
| S/G/Y/R/B/O |
NT_008023 | AC100822 | 132720727 | 3 |   |   | AF121899 | 132879443 | 3 | 57103 | 0 | 0 | 57103 |
| S/G/Y/R/B/O |
NT_008023 | AC100822 | 132720727 | 3 |   |   | AF188026 | 132879443 | 2 | 39986 | 0 | 0 | 39986 |
| S/G/Y/R/B/O |
NT_008023 | AC067844 | 132879443 | 2 | chr8 | NT_008023 | AC103822 | 133028535 | 3 | 46479 | 0 | 0 | 46479 |
| S/G/Y/R/B/O |
NT_008023 | AC103822 | 133028535 | 3 | chr8 | NT_008023 | AC015807 | 133036995 | 3 | 2543 | 0 | 0 | 2543 |
| S/G/Y/R/B/O |
NT_008023 | AC015807 | 133036995 | 3 | chr8 | NT_008023 | AC011198 | 133185799 | 3 | 68214 | 0 | 0 | 68214 |
| S/G/Y/R/B/O |
NT_008023 | AC015807 | 133036995 | 3 | chr8 | NT_008023 | AC087044 | 133308908 | 1 | 146252 | 1710 | 0 | 147962 |
| S/G/Y/R/B/O |
NT_008023 | AC011198 | 133185799 | 3 | chr8 | NT_008023 | AC087044 | 133308908 | 1 | 58588 | 1710 | 0 | 60298 |
| S/G/Y/R/B/O |
NT_008023 | AC087044 | 133308908 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008023 | AC087044 | 133308908 | 1 | chr8 | NT_008023 | AC015807 | 133036995 | 3 | 146252 | 1710 | 0 | 147962 |
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