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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_023726 | AC104317 | 128396481 | 1 | chr8 | NT_023726 | AC090198 | 128558756 | 1 | 14476 | 6345 | 0 | 20821 |
| S/G/Y/R/B/O |
NT_023726 | AC104317 | 128396481 | 1 | chr8 | NT_023726 | AC036138 | 129917072 | 1 | 14167 | 0 | 0 | 14167 |
| S/G/Y/R/B/O |
NT_023726 | AC104317 | 128396481 | 1 | chr8 | NT_023726 | AF313041 | 128563555 | 1 | 49528 | 0 | 0 | 49528 |
| S/G/Y/R/B/O |
NT_023726 | AC104317 | 128396481 | 1 |   |   | AC090192 | 129917072 | 1 | 124154 | 2038 | 44543 | 170735 |
| S/G/Y/R/B/O |
NT_023726 | AC090198 | 128558756 | 1 | chr8 | NT_023726 | AF313041 | 128563555 | 1 | 184319 | 6343 | 0 | 190662 |
| S/G/Y/R/B/O |
NT_023726 | AC090198 | 128558756 | 1 | chr8 | NT_023726 | AC090922 | 128645545 | 3 | 31036 | 0 | 0 | 31036 |
| S/G/Y/R/B/O |
NT_023726 | AC090198 | 128558756 | 1 |   |   | AC011004 | 128563555 | 1 | 31036 | 0 | 0 | 31036 |
| S/G/Y/R/B/O |
NT_023726 | AC090198 | 128558756 | 1 |   |   | AC091575 | 128645545 | 1 | 31036 | 0 | 0 | 31036 |
| S/G/Y/R/B/O |
NT_023726 | AC090198 | 128558756 | 1 |   |   | AF295017 | 128396481 | 3 | 31008 | 0 | 0 | 31008 |
| S/G/Y/R/B/O |
NT_023726 | AF313041 | 128563555 | 1 | chr8 | NT_023726 | AC090922 | 128645545 | 3 | 57708 | 0 | 0 | 57708 |
| S/G/Y/R/B/O |
NT_023726 | AF313041 | 128563555 | 1 | chr8 | NT_023726 | AC104317 | 128396481 | 1 | 49528 | 0 | 0 | 49528 |
| S/G/Y/R/B/O |
NT_023726 | AF313041 | 128563555 | 1 |   |   | AC011004 | 128563555 | 1 | 48644 | 0 | 0 | 48644 |
| S/G/Y/R/B/O |
NT_023726 | AF313041 | 128563555 | 1 |   |   | AC090192 | 128563555 | 1 | 32432 | 2038 | 8831 | 43301 |
| S/G/Y/R/B/O |
NT_023726 | AF313041 | 128563555 | 1 |   |   | AC091575 | 128645545 | 1 | 48644 | 0 | 0 | 48644 |
| S/G/Y/R/B/O |
NT_023726 | AF313041 | 128563555 | 1 |   |   | AF295017 | 128396481 | 3 | 57701 | 0 | 0 | 57701 |
| S/G/Y/R/B/O |
NT_023726 | AC090922 | 128645545 | 3 | chr8 | NT_023726 | AC104318 | 128817775 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023726 | AC090922 | 128645545 | 3 | chr8 | NT_023726 | AC090198 | 128558756 | 1 | 31036 | 0 | 0 | 31036 |
| S/G/Y/R/B/O |
NT_023726 | AC090922 | 128645545 | 3 |   |   | AC011004 | 128396481 | 1 | 84798 | 0 | 71622 | 156420 |
| S/G/Y/R/B/O |
NT_023726 | AC090922 | 128645545 | 3 |   |   | AC083932 | 128396481 | 1 | 131204 | 0 | 0 | 131204 |
| S/G/Y/R/B/O |
NT_023726 | AC090922 | 128645545 | 3 |   |   | AC091575 | 37371152 | 1 | 182456 | 0 | 0 | 182456 |
| S/G/Y/R/B/O |
NT_023726 | AC090922 | 128645545 | 3 |   |   | AC091641 | 37371152 | 2 | 34699 | 0 | 0 | 34699 |
| S/G/Y/R/B/O |
NT_023726 | AC090922 | 128645545 | 3 |   |   | AF295017 | 37371152 | 3 | 206892 | 0 | 0 | 206892 |
| S/G/Y/R/B/O |
NT_023726 | AC104318 | 128817775 | 2 | chr8 | NT_023726 | AC087436 | 129000488 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023726 | AC104318 | 128817775 | 2 |   |   | AC083932 | 128563555 | 1 | 52927 | 2741 | 0 | 55668 |
| S/G/Y/R/B/O |
NT_023726 | AC104318 | 128817775 | 2 |   |   | AC091641 | 37371152 | 2 | 182192 | 0 | 0 | 182192 |
| S/G/Y/R/B/O |
NT_023726 | AC104318 | 128817775 | 2 |   |   | AF216671 | 37371152 | 2 | 15475 | 0 | 0 | 15475 |
| S/G/Y/R/B/O |
NT_023726 | AC087436 | 129000488 | 2 | chr8 | NT_023726 | AC009908 | 129063764 | 3 | 104138 | 0 | 0 | 104138 |
| S/G/Y/R/B/O |
NT_023726 | AC087436 | 129000488 | 2 |   |   | AC016451 | 129063764 | 1 | 77932 | 0 | 0 | 77932 |
| S/G/Y/R/B/O |
NT_023726 | AC087436 | 129000488 | 2 |   |   | AC084788 | 129063764 | 1 | 95948 | 0 | 0 | 95948 |
| S/G/Y/R/B/O |
NT_023726 | AC087436 | 129000488 | 2 |   |   | AC091641 | 129063764 | 2 | 37935 | 0 | 0 | 37935 |
| S/G/Y/R/B/O |
NT_023726 | AC087436 | 129000488 | 2 |   |   | AF216671 | 129063764 | 2 | 109358 | 0 | 0 | 109358 |
| S/G/Y/R/B/O |
NT_023726 | AC009908 | 129063764 | 3 | chr8 | NT_023726 | AF267169 | 129175555 | 1 | 29879 | 0 | 0 | 29879 |
| S/G/Y/R/B/O |
NT_023726 | AC009908 | 129063764 | 3 |   |   | AC016451 | 129063764 | 1 | 166237 | 0 | 1267 | 167504 |
| S/G/Y/R/B/O |
NT_023726 | AC009908 | 129063764 | 3 |   |   | AC084788 | 129063764 | 1 | 137017 | 1600 | 0 | 138617 |
| S/G/Y/R/B/O |
NT_023726 | AC009908 | 129063764 | 3 |   |   | AF216671 | 129000488 | 2 | 131783 | 0 | 0 | 131783 |
| S/G/Y/R/B/O |
NT_023726 | AF267169 | 129175555 | 1 | chr8 | NT_023726 | AC104431 | 129235333 | 1 | 68421 | 0 | 0 | 68421 |
| S/G/Y/R/B/O |
NT_023726 | AF267169 | 129175555 | 1 | chr8 | NT_023726 | AC084083 | 129263190 | 1 | 40562 | 0 | 0 | 40562 |
| S/G/Y/R/B/O |
NT_023726 | AF267169 | 129175555 | 1 |   |   | AC084788 | 129263190 | 1 | 20898 | 0 | 0 | 20898 |
| S/G/Y/R/B/O |
NT_023726 | AC104431 | 129235333 | 1 | chr8 | NT_023726 | AC084083 | 129263190 | 1 | 167446 | 0 | 3116 | 170562 |
| S/G/Y/R/B/O |
NT_023726 | AC104431 | 129235333 | 1 | chr8 | NT_023726 | AC083976 | 129488836 | 1 | 31749 | 0 | 0 | 31749 |
| S/G/Y/R/B/O |
NT_023726 | AC104431 | 129235333 | 1 | chr8 | NT_023726 | AC104319 | 129489550 | 1 | 31643 | 1949 | 0 | 33592 |
| S/G/Y/R/B/O |
NT_023726 | AC104431 | 129235333 | 1 | chr8 | NT_023726 | AF179296 | 129388697 | 2 | 62863 | 0 | 9771 | 72634 |
| S/G/Y/R/B/O |
NT_023726 | AC084083 | 129263190 | 1 | chr8 | NT_023726 | AF179296 | 129388697 | 2 | 29013 | 0 | 40055 | 69068 |
| S/G/Y/R/B/O |
NT_023726 | AC084083 | 129263190 | 1 | chr8 | NT_023726 | AC083976 | 129488836 | 1 | 30437 | 0 | 0 | 30437 |
| S/G/Y/R/B/O |
NT_023726 | AC084083 | 129263190 | 1 | chr8 | NT_023726 | AC104319 | 129489550 | 1 | 30460 | 1951 | 0 | 32411 |
| S/G/Y/R/B/O |
NT_023726 | AC084083 | 129263190 | 1 | chr8 | NT_023726 | AF267169 | 129175555 | 1 | 40562 | 0 | 0 | 40562 |
| S/G/Y/R/B/O |
NT_023726 | AF179296 | 129388697 | 2 | chr8 | NT_023726 | AC091114 | 129480848 | 1 | 13639 | 0 | 31031 | 44670 |
| S/G/Y/R/B/O |
NT_023726 | AF179296 | 129388697 | 2 | chr8 | NT_023726 | AC083976 | 129488836 | 1 | 82057 | 0 | 242 | 82299 |
| S/G/Y/R/B/O |
NT_023726 | AF179296 | 129388697 | 2 | chr8 | NT_023726 | AC104319 | 129489550 | 1 | 81911 | 1950 | 0 | 83861 |
| S/G/Y/R/B/O |
NT_023726 | AF179296 | 129388697 | 2 | chr8 | NT_023726 | AC104431 | 129235333 | 1 | 62863 | 0 | 9771 | 72634 |
| S/G/Y/R/B/O |
NT_023726 | AF179296 | 129388697 | 2 | chr8 | NT_023726 | AF295013 | 129495311 | 1 | 13246 | 7905 | 13552 | 34703 |
| S/G/Y/R/B/O |
NT_023726 | AC091114 | 129480848 | 1 | chr8 | NT_023726 | AC083976 | 129488836 | 1 | 96183 | 2698 | 15295 | 114176 |
| S/G/Y/R/B/O |
NT_023726 | AC091114 | 129480848 | 1 | chr8 | NT_023726 | AC104319 | 129489550 | 1 | 109964 | 5810 | 47001 | 162775 |
| S/G/Y/R/B/O |
NT_023726 | AC091114 | 129480848 | 1 | chr8 | NT_023726 | AF252829 | 129553785 | 3 | 51908 | 0 | 0 | 51908 |
| S/G/Y/R/B/O |
NT_023726 | AC091114 | 129480848 | 1 | chr8 | NT_023726 | AF295013 | 129495311 | 1 | 31359 | 9873 | 20161 | 61393 |
| S/G/Y/R/B/O |
NT_023726 | AC091114 | 129480848 | 1 |   |   | AC019218 | 129495311 | 1 | 51963 | 0 | 0 | 51963 |
| S/G/Y/R/B/O |
NT_023726 | AC091114 | 129480848 | 1 |   |   | AC091562 | 129263190 | 1 | 51928 | 0 | 0 | 51928 |
| S/G/Y/R/B/O |
NT_023726 | AC083976 | 129488836 | 1 | chr8 | NT_023726 | AC104319 | 129489550 | 1 | 158945 | 5220 | 1328 | 165493 |
| S/G/Y/R/B/O |
NT_023726 | AC083976 | 129488836 | 1 | chr8 | NT_023726 | AC084083 | 129263190 | 1 | 30437 | 0 | 0 | 30437 |
| S/G/Y/R/B/O |
NT_023726 | AC083976 | 129488836 | 1 | chr8 | NT_023726 | AC104431 | 129235333 | 1 | 31749 | 0 | 0 | 31749 |
| S/G/Y/R/B/O |
NT_023726 | AC083976 | 129488836 | 1 | chr8 | NT_023726 | AF179296 | 129388697 | 2 | 82057 | 0 | 242 | 82299 |
| S/G/Y/R/B/O |
NT_023726 | AC083976 | 129488836 | 1 | chr8 | NT_023726 | AF252829 | 129553785 | 3 | 60105 | 0 | 0 | 60105 |
| S/G/Y/R/B/O |
NT_023726 | AC083976 | 129488836 | 1 | chr8 | NT_023726 | AF295013 | 129495311 | 1 | 30508 | 18272 | 24541 | 73321 |
| S/G/Y/R/B/O |
NT_023726 | AC083976 | 129488836 | 1 |   |   | AC019218 | 129495311 | 1 | 60168 | 0 | 0 | 60168 |
| S/G/Y/R/B/O |
NT_023726 | AC083976 | 129488836 | 1 |   |   | AC091562 | 129480848 | 1 | 36639 | 0 | 0 | 36639 |
| S/G/Y/R/B/O |
NT_023726 | AC104319 | 129489550 | 1 | chr8 | NT_023726 | AF295013 | 129495311 | 1 | 27224 | 16671 | 21794 | 65689 |
| S/G/Y/R/B/O |
NT_023726 | AC104319 | 129489550 | 1 | chr8 | NT_023726 | AC084083 | 129263190 | 1 | 30460 | 1951 | 0 | 32411 |
| S/G/Y/R/B/O |
NT_023726 | AC104319 | 129489550 | 1 | chr8 | NT_023726 | AC091114 | 129480848 | 1 | 109964 | 5810 | 47001 | 162775 |
| S/G/Y/R/B/O |
NT_023726 | AC104319 | 129489550 | 1 | chr8 | NT_023726 | AC104431 | 129235333 | 1 | 31643 | 1949 | 0 | 33592 |
| S/G/Y/R/B/O |
NT_023726 | AC104319 | 129489550 | 1 | chr8 | NT_023726 | AF179296 | 129388697 | 2 | 81911 | 1950 | 0 | 83861 |
| S/G/Y/R/B/O |
NT_023726 | AC104319 | 129489550 | 1 | chr8 | NT_023726 | AF252829 | 129553785 | 3 | 60155 | 0 | 344 | 60499 |
| S/G/Y/R/B/O |
NT_023726 | AC104319 | 129489550 | 1 |   |   | AC019218 | 129495311 | 1 | 60218 | 0 | 344 | 60562 |
| S/G/Y/R/B/O |
NT_023726 | AC104319 | 129489550 | 1 |   |   | AC091562 | 129480848 | 1 | 56225 | 2858 | 1046 | 60129 |
| S/G/Y/R/B/O |
NT_023726 | AF295013 | 129495311 | 1 | chr8 | NT_023726 | AF252829 | 129553785 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023726 | AF295013 | 129495311 | 1 | chr8 | NT_023726 | AC083976 | 129488836 | 1 | 30508 | 18272 | 24541 | 73321 |
| S/G/Y/R/B/O |
NT_023726 | AF295013 | 129495311 | 1 | chr8 | NT_023726 | AC091114 | 129480848 | 1 | 31359 | 9873 | 20161 | 61393 |
| S/G/Y/R/B/O |
NT_023726 | AF295013 | 129495311 | 1 | chr8 | NT_023726 | AF179296 | 129388697 | 2 | 13246 | 7905 | 13552 | 34703 |
| S/G/Y/R/B/O |
NT_023726 | AF252829 | 129553785 | 3 | chr8 | NT_023726 | AC016074 | 129753435 | 3 | 22533 | 0 | 0 | 22533 |
| S/G/Y/R/B/O |
NT_023726 | AF252829 | 129553785 | 3 | chr8 | NT_023726 | AC083976 | 129488836 | 1 | 60105 | 0 | 0 | 60105 |
| S/G/Y/R/B/O |
NT_023726 | AF252829 | 129553785 | 3 | chr8 | NT_023726 | AC091114 | 129480848 | 1 | 51908 | 0 | 0 | 51908 |
| S/G/Y/R/B/O |
NT_023726 | AF252829 | 129553785 | 3 | chr8 | NT_023726 | AC104319 | 129489550 | 1 | 60155 | 0 | 344 | 60499 |
| S/G/Y/R/B/O |
NT_023726 | AF252829 | 129553785 | 3 |   |   | AC019218 | 129753435 | 1 | 61930 | 0 | 137589 | 199519 |
| S/G/Y/R/B/O |
NT_023726 | AF252829 | 129553785 | 3 |   |   | AC091562 | 129480848 | 1 | 158268 | 1812 | 27794 | 187874 |
| S/G/Y/R/B/O |
NT_023726 | AC016074 | 129753435 | 3 | chr8 | NT_023726 | AC036138 | 129917072 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023726 | AC016074 | 129753435 | 3 |   |   | AC116547 | 129489550 | 3 | 145160 | 0 | 0 | 145160 |
| S/G/Y/R/B/O |
NT_023726 | AC036138 | 129917072 | 1 | chr8 | NT_023726 | AC090921 | 129925816 | 1 | 102939 | 0 | 78604 | 181543 |
| S/G/Y/R/B/O |
NT_023726 | AC036138 | 129917072 | 1 | chr8 | NT_023726 | AC012415 | 130104584 | 1 | 66418 | 0 | 0 | 66418 |
| S/G/Y/R/B/O |
NT_023726 | AC036138 | 129917072 | 1 | chr8 | NT_023726 | AC104317 | 128396481 | 1 | 14167 | 0 | 0 | 14167 |
| S/G/Y/R/B/O |
NT_023726 | AC036138 | 129917072 | 1 |   |   | AC018402 | 130104584 | 1 | 84506 | 2858 | 0 | 87364 |
| S/G/Y/R/B/O |
NT_023726 | AC036138 | 129917072 | 1 |   |   | AC090192 | 118596881 | 1 | 14168 | 0 | 0 | 14168 |
| S/G/Y/R/B/O |
NT_023726 | AC036138 | 129917072 | 1 |   |   | AF228660 | 128396481 | 1 | 178334 | 0 | 0 | 178334 |
| S/G/Y/R/B/O |
NT_023726 | AC090921 | 129925816 | 1 | chr8 | NT_023726 | AC012415 | 130104584 | 1 | 69854 | 0 | 0 | 69854 |
| S/G/Y/R/B/O |
NT_023726 | AC090921 | 129925816 | 1 |   |   | AC018402 | 130104584 | 1 | 84511 | 2858 | 0 | 87369 |
| S/G/Y/R/B/O |
NT_023726 | AC090921 | 129925816 | 1 |   |   | AF228660 | 128396481 | 1 | 181784 | 0 | 0 | 181784 |
| S/G/Y/R/B/O |
NT_023726 | AC012415 | 130104584 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_023726 | AC012415 | 130104584 | 1 | chr8 | NT_023726 | AC036138 | 129917072 | 1 | 66418 | 0 | 0 | 66418 |
| S/G/Y/R/B/O |
NT_023726 | AC012415 | 130104584 | 1 |   |   | AC018402 | 128396481 | 1 | 159409 | 0 | 0 | 159409 |
| S/G/Y/R/B/O |
NT_023726 | AC012415 | 130104584 | 1 |   |   | AF228660 | 129925816 | 1 | 66373 | 0 | 0 | 66373 |
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