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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_023666 | AC024958 | 23191499 | 3 | chr8 | NT_023666 | AC018422 | 23382033 | 2 | 64643 | 0 | 0 | 64643 |
| S/G/Y/R/B/O |
NT_023666 | AC018422 | 23382033 | 2 | chr8 | NT_023666 | AC084091 | 23474897 | 3 | 26188 | 0 | 0 | 26188 |
| S/G/Y/R/B/O |
NT_023666 | AC018422 | 23382033 | 2 |   |   | AC079972 | 23191499 | 1 | 36789 | 0 | 0 | 36789 |
| S/G/Y/R/B/O |
NT_023666 | AC084091 | 23474897 | 3 | chr8 | NT_023666 | AF106564 | 23632186 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023666 | AC084091 | 23474897 | 3 |   |   | AC021000 | 23382033 | 3 | 59963 | 0 | 0 | 59963 |
| S/G/Y/R/B/O |
NT_023666 | AC084091 | 23474897 | 3 |   |   | AC079972 | 23382033 | 1 | 120919 | 2917 | 0 | 123836 |
| S/G/Y/R/B/O |
NT_023666 | AF106564 | 23632186 | 3 | chr8 | NT_023666 | AC105359 | 23769208 | 3 | 90243 | 0 | 0 | 90243 |
| S/G/Y/R/B/O |
NT_023666 | AF106564 | 23632186 | 3 |   |   | AC021000 | 2549922 | 3 | 138440 | 0 | 0 | 138440 |
| S/G/Y/R/B/O |
NT_023666 | AF106564 | 23632186 | 3 |   |   | AF260013 | 23769208 | 1 | 56936 | 1763 | 2556 | 61255 |
| S/G/Y/R/B/O |
NT_023666 | AC105359 | 23769208 | 3 | chr8 | NT_023666 | AC107373 | 23800726 | 2 | 38030 | 0 | 0 | 38030 |
| S/G/Y/R/B/O |
NT_023666 | AC105359 | 23769208 | 3 |   |   | AC021000 | 23769208 | 3 | 85709 | 0 | 0 | 85709 |
| S/G/Y/R/B/O |
NT_023666 | AC105359 | 23769208 | 3 |   |   | AF260013 | 23632186 | 1 | 65163 | 1763 | 6343 | 73269 |
| S/G/Y/R/B/O |
NT_023666 | AC107373 | 23800726 | 2 | chr8 | NT_023666 | AC073581 | 23843267 | 3 | 35647 | 0 | 0 | 35647 |
| S/G/Y/R/B/O |
NT_023666 | AC107373 | 23800726 | 2 |   |   | AF176680 | 23769208 | 1 | 47855 | 0 | 25589 | 73444 |
| S/G/Y/R/B/O |
NT_023666 | AC107373 | 23800726 | 2 |   |   | AF260013 | 23769208 | 1 | 27538 | 0 | 5143 | 32681 |
| S/G/Y/R/B/O |
NT_023666 | AC073581 | 23843267 | 3 | chr8 | NT_023666 | AC041005 | 23999764 | 2 | 14901 | 0 | 0 | 14901 |
| S/G/Y/R/B/O |
NT_023666 | AC073581 | 23843267 | 3 |   |   | AF267908 | 23800726 | 1 | 72806 | 4101 | 1453 | 78360 |
| S/G/Y/R/B/O |
NT_023666 | AC041005 | 23999764 | 2 | chr8 | NT_023666 | AC091185 | 24140521 | 1 | 14752 | 0 | 0 | 14752 |
| S/G/Y/R/B/O |
NT_023666 | AC041005 | 23999764 | 2 | chr8 | NT_023666 | AC090104 | 24165400 | 1 | 123703 | 0 | 0 | 123703 |
| S/G/Y/R/B/O |
NT_023666 | AC041005 | 23999764 | 2 |   |   | AC079783 | 23843267 | 1 | 65912 | 1740 | 9225 | 76877 |
| S/G/Y/R/B/O |
NT_023666 | AC041005 | 23999764 | 2 |   |   | AF267908 | 24140521 | 1 | 24395 | 6217 | 0 | 30612 |
| S/G/Y/R/B/O |
NT_023666 | AC091185 | 24140521 | 1 | chr8 | NT_023666 | AC090104 | 24165400 | 1 | 72620 | 0 | 1450 | 74070 |
| S/G/Y/R/B/O |
NT_023666 | AC091185 | 24140521 | 1 | chr8 | NT_023666 | AC027630 | 24252809 | 1 | 49194 | 1507 | 16381 | 67082 |
| S/G/Y/R/B/O |
NT_023666 | AC091185 | 24140521 | 1 |   |   | AC079783 | 23999764 | 1 | 58219 | 4130 | 55205 | 117554 |
| S/G/Y/R/B/O |
NT_023666 | AC090104 | 24165400 | 1 | chr8 | NT_023666 | AC027630 | 24252809 | 1 | 0 | 0 | 3428 | 3428 |
| S/G/Y/R/B/O |
NT_023666 | AC090104 | 24165400 | 1 | chr8 | NT_023666 | AC041005 | 23999764 | 2 | 123703 | 0 | 0 | 123703 |
| S/G/Y/R/B/O |
NT_023666 | AC090104 | 24165400 | 1 |   |   | AC079783 | 23999764 | 1 | 75014 | 5959 | 32330 | 113303 |
| S/G/Y/R/B/O |
NT_023666 | AC027630 | 24252809 | 1 | chr8 | NT_023666 | AF263550 | 24323568 | 3 | 17685 | 1880 | 22370 | 41935 |
| S/G/Y/R/B/O |
NT_023666 | AC027630 | 24252809 | 1 | chr8 | NT_023666 | AC091185 | 24140521 | 1 | 49194 | 1507 | 16381 | 67082 |
| S/G/Y/R/B/O |
NT_023666 | AC027630 | 24252809 | 1 |   |   | AC079783 | 24140521 | 1 | 20720 | 1500 | 6789 | 29009 |
| S/G/Y/R/B/O |
NT_023666 | AC027630 | 24252809 | 1 |   |   | AC104562 | 24140521 | 2 | 27687 | 1880 | 22410 | 51977 |
| S/G/Y/R/B/O |
NT_023666 | AF263550 | 24323568 | 3 | chr8 | NT_023666 | AC087755 | 24410954 | 1 | 17282 | 0 | 1332 | 18614 |
| S/G/Y/R/B/O |
NT_023666 | AF263550 | 24323568 | 3 |   |   | AC104562 | 24410954 | 2 | 108518 | 0 | 0 | 108518 |
| S/G/Y/R/B/O |
NT_023666 | AC087755 | 24410954 | 1 | chr8 | NT_023666 | AC009623 | 24457554 | 3 | 121058 | 0 | 0 | 121058 |
| S/G/Y/R/B/O |
NT_023666 | AC087755 | 24410954 | 1 |   |   | AC104562 | 24457554 | 2 | 17298 | 0 | 1334 | 18632 |
| S/G/Y/R/B/O |
NT_023666 | AC009623 | 24457554 | 3 | chr8 | NT_023666 | AC090103 | 24654507 | 2 | 20400 | 0 | 0 | 20400 |
| S/G/Y/R/B/O |
NT_023666 | AC090103 | 24654507 | 2 | chr8 | NT_023666 | AC080043 | 24796032 | 3 | 83146 | 0 | 0 | 83146 |
| S/G/Y/R/B/O |
NT_023666 | AC080043 | 24796032 | 3 | chr8 | NT_023666 | AC023566 | 24874329 | 2 | 134667 | 0 | 0 | 134667 |
| S/G/Y/R/B/O |
NT_023666 | AC080043 | 24796032 | 3 | chr8 | NT_023666 | AC113186 | 24924198 | 2 | 43153 | 0 | 434 | 43587 |
| S/G/Y/R/B/O |
NT_023666 | AC023566 | 24874329 | 2 | chr8 | NT_023666 | AC113186 | 24924198 | 2 | 42817 | 0 | 75579 | 118396 |
| S/G/Y/R/B/O |
NT_023666 | AC113186 | 24924198 | 2 | chr8 | NT_023666 | AC079097 | 24963042 | 1 | 13895 | 0 | 38724 | 52619 |
| S/G/Y/R/B/O |
NT_023666 | AC113186 | 24924198 | 2 | chr8 | NT_023666 | AC080043 | 24796032 | 3 | 43153 | 0 | 434 | 43587 |
| S/G/Y/R/B/O |
NT_023666 | AC113186 | 24924198 | 2 | chr8 | NT_023666 | AF172273 | 24973962 | 1 | 34094 | 0 | 6285 | 40379 |
| S/G/Y/R/B/O |
NT_023666 | AC079097 | 24963042 | 1 | chr8 | NT_023666 | AF172273 | 24973962 | 1 | 29910 | 0 | 28827 | 58737 |
| S/G/Y/R/B/O |
NT_023666 | AC079097 | 24963042 | 1 | chr8 | NT_023666 | AC022911 | 25055118 | 3 | 24069 | 0 | 5629 | 29698 |
| S/G/Y/R/B/O |
NT_023666 | AF172273 | 24973962 | 1 | chr8 | NT_023666 | AC022911 | 25055118 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023666 | AF172273 | 24973962 | 1 | chr8 | NT_023666 | AC113186 | 24924198 | 2 | 34094 | 0 | 6285 | 40379 |
| S/G/Y/R/B/O |
NT_023666 | AC022911 | 25055118 | 3 | chr8 | NT_023666 | AC011726 | 25231181 | 1 | 109424 | 0 | 0 | 109424 |
| S/G/Y/R/B/O |
NT_023666 | AC022911 | 25055118 | 3 | chr8 | NT_023666 | AC079097 | 24963042 | 1 | 24069 | 0 | 5629 | 29698 |
| S/G/Y/R/B/O |
NT_023666 | AC011726 | 25231181 | 1 | chr8 | NT_023666 | AC015743 | 25290247 | 2 | 50483 | 0 | 0 | 50483 |
| S/G/Y/R/B/O |
NT_023666 | AC015743 | 25290247 | 2 | chr8 | NT_023666 | AC015564 | 25469278 | 1 | 78980 | 0 | 0 | 78980 |
| S/G/Y/R/B/O |
NT_023666 | AC015564 | 25469278 | 1 | chr8 | NT_023666 | AC067904 | 25492278 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023666 | AC015564 | 25469278 | 1 | chr8 | NT_023666 | AC091675 | 25705286 | 2 | 26374 | 2112 | 964 | 29450 |
| S/G/Y/R/B/O |
NT_023666 | AC067904 | 25492278 | 1 | chr8 | NT_023666 | AC022839 | 25547282 | 3 | 10753 | 0 | 0 | 10753 |
| S/G/Y/R/B/O |
NT_023666 | AC067904 | 25492278 | 1 | chr8 | NT_023666 | AC025712 | 25755505 | 1 | 27618 | 0 | 0 | 27618 |
| S/G/Y/R/B/O |
NT_023666 | AC067904 | 25492278 | 1 | chr8 | NT_023666 | AC091675 | 25705286 | 2 | 10747 | 0 | 0 | 10747 |
| S/G/Y/R/B/O |
NT_023666 | AC067904 | 25492278 | 1 |   |   | AC041007 | 25755505 | 1 | 20067 | 2050 | 0 | 22117 |
| S/G/Y/R/B/O |
NT_023666 | AC022839 | 25547282 | 3 | chr8 | NT_023666 | AC091675 | 25705286 | 2 | 99927 | 2165 | 0 | 102092 |
| S/G/Y/R/B/O |
NT_023666 | AC022839 | 25547282 | 3 | chr8 | NT_023666 | AC025712 | 25755505 | 1 | 49211 | 4226 | 44707 | 98144 |
| S/G/Y/R/B/O |
NT_023666 | AC091675 | 25705286 | 2 | chr8 | NT_023666 | AC025712 | 25755505 | 1 | 74575 | 14405 | 65148 | 154128 |
| S/G/Y/R/B/O |
NT_023666 | AC091675 | 25705286 | 2 | chr8 | NT_023666 | AC015564 | 25469278 | 1 | 26374 | 2112 | 964 | 29450 |
| S/G/Y/R/B/O |
NT_023666 | AC091675 | 25705286 | 2 | chr8 | NT_023666 | AC067904 | 25492278 | 1 | 10747 | 0 | 0 | 10747 |
| S/G/Y/R/B/O |
NT_023666 | AC025712 | 25755505 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_023666 | AC025712 | 25755505 | 1 | chr8 | NT_023666 | AC022839 | 25547282 | 3 | 49211 | 4226 | 44707 | 98144 |
| S/G/Y/R/B/O |
NT_023666 | AC025712 | 25755505 | 1 | chr8 | NT_023666 | AC067904 | 25492278 | 1 | 27618 | 0 | 0 | 27618 |
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