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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008300 | AC087363 | 21834835 | 1 | chr8 | NT_008300 | AC022270 | 21893138 | 1 | 127804 | 11782 | 24005 | 163591 |
| S/G/Y/R/B/O |
NT_008300 | AC087363 | 21834835 | 1 | chr8 | NT_008300 | AC087819 | 22044274 | 1 | 29317 | 0 | 0 | 29317 |
| S/G/Y/R/B/O |
NT_008300 | AC087363 | 21834835 | 1 | chr8 | NT_008300 | AC090442 | 21925671 | 1 | 89279 | 0 | 0 | 89279 |
| S/G/Y/R/B/O |
NT_008300 | AC087363 | 21834835 | 1 | chr8 | NT_008300 | AC090471 | 22009394 | 1 | 93568 | 0 | 0 | 93568 |
| S/G/Y/R/B/O |
NT_008300 | AC022270 | 21893138 | 1 | chr8 | NT_008300 | AC090442 | 21925671 | 1 | 42893 | 4435 | 16398 | 63726 |
| S/G/Y/R/B/O |
NT_008300 | AC022270 | 21893138 | 1 | chr8 | NT_008300 | AC090471 | 22009394 | 1 | 43566 | 6960 | 16401 | 66927 |
| S/G/Y/R/B/O |
NT_008300 | AC090442 | 21925671 | 1 | chr8 | NT_008300 | AC090471 | 22009394 | 1 | 111718 | 2810 | 19351 | 133879 |
| S/G/Y/R/B/O |
NT_008300 | AC090442 | 21925671 | 1 | chr8 | NT_008300 | AC023288 | 22072978 | 1 | 32255 | 1931 | 32453 | 66639 |
| S/G/Y/R/B/O |
NT_008300 | AC090442 | 21925671 | 1 | chr8 | NT_008300 | AC087363 | 21834835 | 1 | 89279 | 0 | 0 | 89279 |
| S/G/Y/R/B/O |
NT_008300 | AC090442 | 21925671 | 1 | chr8 | NT_008300 | AC087819 | 22044274 | 1 | 45907 | 1934 | 0 | 47841 |
| S/G/Y/R/B/O |
NT_008300 | AC090442 | 21925671 | 1 | chr8 | NT_008300 | AC091171 | 22043582 | 1 | 62027 | 1967 | 0 | 63994 |
| S/G/Y/R/B/O |
NT_008300 | AC090471 | 22009394 | 1 | chr8 | NT_008300 | AC091171 | 22043582 | 1 | 64603 | 0 | 0 | 64603 |
| S/G/Y/R/B/O |
NT_008300 | AC090471 | 22009394 | 1 | chr8 | NT_008300 | AC022270 | 21893138 | 1 | 43566 | 6960 | 16401 | 66927 |
| S/G/Y/R/B/O |
NT_008300 | AC090471 | 22009394 | 1 | chr8 | NT_008300 | AC023288 | 22072978 | 1 | 37153 | 0 | 34804 | 71957 |
| S/G/Y/R/B/O |
NT_008300 | AC090471 | 22009394 | 1 | chr8 | NT_008300 | AC087363 | 21834835 | 1 | 93568 | 0 | 0 | 93568 |
| S/G/Y/R/B/O |
NT_008300 | AC090471 | 22009394 | 1 | chr8 | NT_008300 | AC087819 | 22044274 | 1 | 65609 | 0 | 0 | 65609 |
| S/G/Y/R/B/O |
NT_008300 | AC091171 | 22043582 | 1 | chr8 | NT_008300 | AC087819 | 22044274 | 1 | 95412 | 2305 | 5286 | 103003 |
| S/G/Y/R/B/O |
NT_008300 | AC091171 | 22043582 | 1 | chr8 | NT_008300 | AC023288 | 22072978 | 1 | 32550 | 0 | 76344 | 108894 |
| S/G/Y/R/B/O |
NT_008300 | AC091171 | 22043582 | 1 | chr8 | NT_008300 | AC090442 | 21925671 | 1 | 62027 | 1967 | 0 | 63994 |
| S/G/Y/R/B/O |
NT_008300 | AC087819 | 22044274 | 1 | chr8 | NT_008300 | AC023288 | 22072978 | 1 | 58716 | 0 | 45645 | 104361 |
| S/G/Y/R/B/O |
NT_008300 | AC087819 | 22044274 | 1 | chr8 | NT_008300 | AC087363 | 21834835 | 1 | 29317 | 0 | 0 | 29317 |
| S/G/Y/R/B/O |
NT_008300 | AC087819 | 22044274 | 1 | chr8 | NT_008300 | AC090442 | 21925671 | 1 | 45907 | 1934 | 0 | 47841 |
| S/G/Y/R/B/O |
NT_008300 | AC087819 | 22044274 | 1 | chr8 | NT_008300 | AC090471 | 22009394 | 1 | 65609 | 0 | 0 | 65609 |
| S/G/Y/R/B/O |
NT_008300 | AC087819 | 22044274 | 1 | chr8 | NT_008300 | AC105206 | 23030377 | 2 | 23620 | 0 | 0 | 23620 |
| S/G/Y/R/B/O |
NT_008300 | AC023288 | 22072978 | 1 | chr8 | NT_008300 | AC018736 | 22107190 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008300 | AC023288 | 22072978 | 1 | chr8 | NT_008300 | AC090442 | 21925671 | 1 | 32255 | 1931 | 32453 | 66639 |
| S/G/Y/R/B/O |
NT_008300 | AC023288 | 22072978 | 1 | chr8 | NT_008300 | AC090471 | 22009394 | 1 | 37153 | 0 | 34804 | 71957 |
| S/G/Y/R/B/O |
NT_008300 | AC023288 | 22072978 | 1 | chr8 | NT_008300 | AC091171 | 22043582 | 1 | 32550 | 0 | 76344 | 108894 |
| S/G/Y/R/B/O |
NT_008300 | AC023288 | 22072978 | 1 | chr8 | NT_008300 | AC105206 | 23030377 | 2 | 18374 | 2621 | 11904 | 32899 |
| S/G/Y/R/B/O |
NT_008300 | AC018736 | 22107190 | 1 | chr8 | NT_008300 | AC069217 | 22109277 | 1 | 70851 | 4287 | 13835 | 88973 |
| S/G/Y/R/B/O |
NT_008300 | AC018736 | 22107190 | 1 | chr8 | NT_008300 | AC022930 | 22521398 | 2 | 61857 | 0 | 0 | 61857 |
| S/G/Y/R/B/O |
NT_008300 | AC018736 | 22107190 | 1 | chr8 | NT_008300 | AC037459 | 22698016 | 1 | 43433 | 0 | 0 | 43433 |
| S/G/Y/R/B/O |
NT_008300 | AC018736 | 22107190 | 1 | chr8 | NT_008300 | AC090279 | 22692042 | 1 | 13962 | 0 | 0 | 13962 |
| S/G/Y/R/B/O |
NT_008300 | AC018736 | 22107190 | 1 | chr8 | NT_008300 | AC105910 | 22157979 | 2 | 41217 | 10074 | 4394 | 55685 |
| S/G/Y/R/B/O |
NT_008300 | AC018736 | 22107190 | 1 |   |   | AF238376 | 22157979 | 1 | 19195 | 0 | 0 | 19195 |
| S/G/Y/R/B/O |
NT_008300 | AC069217 | 22109277 | 1 | chr8 | NT_008300 | AC105046 | 22121876 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008300 | AC069217 | 22109277 | 1 | chr8 | NT_008300 | AC022930 | 22521398 | 2 | 44409 | 2424 | 24591 | 71424 |
| S/G/Y/R/B/O |
NT_008300 | AC069217 | 22109277 | 1 | chr8 | NT_008300 | AC037459 | 22698016 | 1 | 29696 | 0 | 26773 | 56469 |
| S/G/Y/R/B/O |
NT_008300 | AC069217 | 22109277 | 1 | chr8 | NT_008300 | AC105910 | 22157979 | 2 | 14146 | 0 | 5506 | 19652 |
| S/G/Y/R/B/O |
NT_008300 | AC105046 | 22121876 | 2 | chr8 | NT_008300 | AC105910 | 22157979 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008300 | AC105046 | 22121876 | 2 | chr8 | NT_008300 | AC037459 | 22698016 | 1 | 15810 | 0 | 0 | 15810 |
| S/G/Y/R/B/O |
NT_008300 | AC105046 | 22121876 | 2 | chr8 | NT_008300 | AC055854 | 22171141 | 1 | 58608 | 0 | 0 | 58608 |
| S/G/Y/R/B/O |
NT_008300 | AC105910 | 22157979 | 2 | chr8 | NT_008300 | AC055854 | 22171141 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008300 | AC105910 | 22157979 | 2 | chr8 | NT_008300 | AC018736 | 22107190 | 1 | 41217 | 10074 | 4394 | 55685 |
| S/G/Y/R/B/O |
NT_008300 | AC105910 | 22157979 | 2 | chr8 | NT_008300 | AC069217 | 22109277 | 1 | 14146 | 0 | 5506 | 19652 |
| S/G/Y/R/B/O |
NT_008300 | AC105910 | 22157979 | 2 | chr8 | NT_008300 | AC105141 | 22909132 | 2 | 79320 | 0 | 0 | 79320 |
| S/G/Y/R/B/O |
NT_008300 | AC105910 | 22157979 | 2 | chr8 | NT_008300 | AC105206 | 23030377 | 2 | 69396 | 0 | 873 | 70269 |
| S/G/Y/R/B/O |
NT_008300 | AC055854 | 22171141 | 1 | chr8 | NT_008300 | AC037441 | 22293989 | 3 | 80128 | 0 | 0 | 80128 |
| S/G/Y/R/B/O |
NT_008300 | AC055854 | 22171141 | 1 | chr8 | NT_008300 | AC105046 | 22121876 | 2 | 58608 | 0 | 0 | 58608 |
| S/G/Y/R/B/O |
NT_008300 | AC037441 | 22293989 | 3 | chr8 | NT_008300 | AC007868 | 22393717 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008300 | AC037441 | 22293989 | 3 | chr8 | NT_008300 | AC084081 | 22482839 | 1 | 64848 | 0 | 434 | 65282 |
| S/G/Y/R/B/O |
NT_008300 | AC007868 | 22393717 | 3 | chr8 | NT_008300 | AC084081 | 22482839 | 1 | 54235 | 0 | 0 | 54235 |
| S/G/Y/R/B/O |
NT_008300 | AC007868 | 22393717 | 3 | chr8 | NT_008300 | AC073431 | 22487247 | 1 | 59962 | 0 | 0 | 59962 |
| S/G/Y/R/B/O |
NT_008300 | AC007868 | 22393717 | 3 |   |   | AF315385 | 22482839 | 3 | 21069 | 0 | 0 | 21069 |
| S/G/Y/R/B/O |
NT_008300 | AC084081 | 22482839 | 1 | chr8 | NT_008300 | AC073431 | 22487247 | 1 | 63857 | 0 | 11798 | 75655 |
| S/G/Y/R/B/O |
NT_008300 | AC084081 | 22482839 | 1 | chr8 | NT_008300 | AC037441 | 22293989 | 3 | 64848 | 0 | 434 | 65282 |
| S/G/Y/R/B/O |
NT_008300 | AC084081 | 22482839 | 1 |   |   | AF315385 | 22487247 | 3 | 21039 | 0 | 0 | 21039 |
| S/G/Y/R/B/O |
NT_008300 | AC073431 | 22487247 | 1 | chr8 | NT_008300 | AC022930 | 22521398 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008300 | AC073431 | 22487247 | 1 | chr8 | NT_008300 | AC007868 | 22393717 | 3 | 59962 | 0 | 0 | 59962 |
| S/G/Y/R/B/O |
NT_008300 | AC073431 | 22487247 | 1 |   |   | AF315385 | 22482839 | 3 | 21069 | 0 | 0 | 21069 |
| S/G/Y/R/B/O |
NT_008300 | AC022930 | 22521398 | 2 | chr8 | NT_008300 | AC090279 | 22692042 | 1 | 84113 | 8632 | 869 | 93614 |
| S/G/Y/R/B/O |
NT_008300 | AC022930 | 22521398 | 2 | chr8 | NT_008300 | AC018736 | 22107190 | 1 | 61857 | 0 | 0 | 61857 |
| S/G/Y/R/B/O |
NT_008300 | AC022930 | 22521398 | 2 | chr8 | NT_008300 | AC037459 | 22698016 | 1 | 167538 | 0 | 0 | 167538 |
| S/G/Y/R/B/O |
NT_008300 | AC022930 | 22521398 | 2 | chr8 | NT_008300 | AC069217 | 22109277 | 1 | 44409 | 2424 | 24591 | 71424 |
| S/G/Y/R/B/O |
NT_008300 | AC022930 | 22521398 | 2 |   |   | AF238376 | 22121876 | 1 | 118645 | 0 | 0 | 118645 |
| S/G/Y/R/B/O |
NT_008300 | AC090279 | 22692042 | 1 | chr8 | NT_008300 | AC037459 | 22698016 | 1 | 109574 | 8603 | 869 | 119046 |
| S/G/Y/R/B/O |
NT_008300 | AC090279 | 22692042 | 1 | chr8 | NT_008300 | AC018736 | 22107190 | 1 | 13962 | 0 | 0 | 13962 |
| S/G/Y/R/B/O |
NT_008300 | AC090279 | 22692042 | 1 |   |   | AF238376 | 22109277 | 1 | 34735 | 4441 | 0 | 39176 |
| S/G/Y/R/B/O |
NT_008300 | AC037459 | 22698016 | 1 | chr8 | NT_008300 | AC105141 | 22909132 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008300 | AC037459 | 22698016 | 1 | chr8 | NT_008300 | AC018736 | 22107190 | 1 | 43433 | 0 | 0 | 43433 |
| S/G/Y/R/B/O |
NT_008300 | AC037459 | 22698016 | 1 | chr8 | NT_008300 | AC022930 | 22521398 | 2 | 167538 | 0 | 0 | 167538 |
| S/G/Y/R/B/O |
NT_008300 | AC037459 | 22698016 | 1 | chr8 | NT_008300 | AC069217 | 22109277 | 1 | 29696 | 0 | 26773 | 56469 |
| S/G/Y/R/B/O |
NT_008300 | AC037459 | 22698016 | 1 | chr8 | NT_008300 | AC105046 | 22121876 | 2 | 15810 | 0 | 0 | 15810 |
| S/G/Y/R/B/O |
NT_008300 | AC037459 | 22698016 | 1 |   |   | AF238376 | 22121876 | 1 | 111069 | 0 | 0 | 111069 |
| S/G/Y/R/B/O |
NT_008300 | AC105141 | 22909132 | 2 | chr8 | NT_008300 | AC105206 | 23030377 | 2 | 127469 | 0 | 2345 | 129814 |
| S/G/Y/R/B/O |
NT_008300 | AC105141 | 22909132 | 2 | chr8 | NT_008300 | AC105910 | 22157979 | 2 | 79320 | 0 | 0 | 79320 |
| S/G/Y/R/B/O |
NT_008300 | AC105206 | 23030377 | 2 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008300 | AC105206 | 23030377 | 2 | chr8 | NT_008300 | AC023288 | 22072978 | 1 | 18374 | 2621 | 11904 | 32899 |
| S/G/Y/R/B/O |
NT_008300 | AC105206 | 23030377 | 2 | chr8 | NT_008300 | AC087819 | 22044274 | 1 | 23620 | 0 | 0 | 23620 |
| S/G/Y/R/B/O |
NT_008300 | AC105206 | 23030377 | 2 | chr8 | NT_008300 | AC105910 | 22157979 | 2 | 69396 | 0 | 873 | 70269 |
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