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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_023676 | AC022730 | 71031553 | 2 | chr8 | NT_023676 | AC021558 | 71187021 | 1 | 36173 | 0 | 0 | 36173 |
| S/G/Y/R/B/O |
NT_023676 | AC021558 | 71187021 | 1 | chr8 | NT_023676 | AC090731 | 71283244 | 3 | 38682 | 0 | 0 | 38682 |
| S/G/Y/R/B/O |
NT_023676 | AC021558 | 71187021 | 1 |   |   | AF207954 | 71283244 | 1 | 29092 | 0 | 0 | 29092 |
| S/G/Y/R/B/O |
NT_023676 | AC090731 | 71283244 | 3 | chr8 | NT_023676 | AC084251 | 71400275 | 1 | 7584 | 0 | 0 | 7584 |
| S/G/Y/R/B/O |
NT_023676 | AC090731 | 71283244 | 3 | chr8 | NT_023676 | AC090280 | 71454470 | 1 | 27785 | 0 | 0 | 27785 |
| S/G/Y/R/B/O |
NT_023676 | AC090731 | 71283244 | 3 | chr8 | NT_023676 | AF254984 | 71408314 | 1 | 17560 | 0 | 3139 | 20699 |
| S/G/Y/R/B/O |
NT_023676 | AC090731 | 71283244 | 3 |   |   | AF207954 | 71454470 | 1 | 82068 | 1527 | 0 | 83595 |
| S/G/Y/R/B/O |
NT_023676 | AC084251 | 71400275 | 1 | chr8 | NT_023676 | AF254984 | 71408314 | 1 | 30449 | 2212 | 7627 | 40288 |
| S/G/Y/R/B/O |
NT_023676 | AC084251 | 71400275 | 1 | chr8 | NT_023676 | AC013364 | 72439364 | 1 | 36451 | 0 | 23127 | 59578 |
| S/G/Y/R/B/O |
NT_023676 | AC084251 | 71400275 | 1 | chr8 | NT_023676 | AC018740 | 71485887 | 1 | 73519 | 0 | 6460 | 79979 |
| S/G/Y/R/B/O |
NT_023676 | AC084251 | 71400275 | 1 | chr8 | NT_023676 | AC090280 | 71454470 | 1 | 60840 | 0 | 0 | 60840 |
| S/G/Y/R/B/O |
NT_023676 | AF254984 | 71408314 | 1 | chr8 | NT_023676 | AC090280 | 71454470 | 1 | 20731 | 0 | 12919 | 33650 |
| S/G/Y/R/B/O |
NT_023676 | AF254984 | 71408314 | 1 | chr8 | NT_023676 | AC090731 | 71283244 | 3 | 17560 | 0 | 3139 | 20699 |
| S/G/Y/R/B/O |
NT_023676 | AF254984 | 71408314 | 1 |   |   | AF207954 | 71283244 | 1 | 17556 | 0 | 3093 | 20649 |
| S/G/Y/R/B/O |
NT_023676 | AC090280 | 71454470 | 1 | chr8 | NT_023676 | AC018740 | 71485887 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023676 | AC090280 | 71454470 | 1 | chr8 | NT_023676 | AC084251 | 71400275 | 1 | 60840 | 0 | 0 | 60840 |
| S/G/Y/R/B/O |
NT_023676 | AC090280 | 71454470 | 1 | chr8 | NT_023676 | AC090731 | 71283244 | 3 | 27785 | 0 | 0 | 27785 |
| S/G/Y/R/B/O |
NT_023676 | AC090280 | 71454470 | 1 |   |   | AF207954 | 71283244 | 1 | 15256 | 0 | 0 | 15256 |
| S/G/Y/R/B/O |
NT_023676 | AC018740 | 71485887 | 1 | chr8 | NT_023676 | AC105082 | 71488344 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023676 | AC018740 | 71485887 | 1 | chr8 | NT_023676 | AC013364 | 72439364 | 1 | 83239 | 5848 | 36824 | 125911 |
| S/G/Y/R/B/O |
NT_023676 | AC018740 | 71485887 | 1 | chr8 | NT_023676 | AC084251 | 71400275 | 1 | 73519 | 0 | 6460 | 79979 |
| S/G/Y/R/B/O |
NT_023676 | AC105082 | 71488344 | 2 | chr8 | NT_023676 | AF201337 | 71624137 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023676 | AC105082 | 71488344 | 2 |   |   | AC009808 | 71400275 | 3 | 88365 | 0 | 0 | 88365 |
| S/G/Y/R/B/O |
NT_023676 | AC105082 | 71488344 | 2 |   |   | AF252827 | 71400275 | 1 | 70925 | 0 | 85630 | 156555 |
| S/G/Y/R/B/O |
NT_023676 | AC105082 | 71488344 | 2 |   |   | AF301237 | 71400275 | 1 | 169411 | 0 | 0 | 169411 |
| S/G/Y/R/B/O |
NT_023676 | AF201337 | 71624137 | 3 | chr8 | NT_023676 | AC021785 | 71717618 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023676 | AF201337 | 71624137 | 3 |   |   | AC009808 | 71400275 | 3 | 93198 | 0 | 0 | 93198 |
| S/G/Y/R/B/O |
NT_023676 | AF201337 | 71624137 | 3 |   |   | AF301237 | 71400275 | 1 | 34903 | 0 | 0 | 34903 |
| S/G/Y/R/B/O |
NT_023676 | AC021785 | 71717618 | 3 | chr8 | NT_023676 | AC022749 | 71857324 | 1 | 101764 | 0 | 0 | 101764 |
| S/G/Y/R/B/O |
NT_023676 | AC021785 | 71717618 | 3 | chr8 | NT_023676 | AC027114 | 71903781 | 1 | 54585 | 0 | 42273 | 96858 |
| S/G/Y/R/B/O |
NT_023676 | AC021785 | 71717618 | 3 |   |   | AC009808 | 71400275 | 3 | 42372 | 0 | 0 | 42372 |
| S/G/Y/R/B/O |
NT_023676 | AC022749 | 71857324 | 1 | chr8 | NT_023676 | AC027114 | 71903781 | 1 | 93581 | 0 | 21951 | 115532 |
| S/G/Y/R/B/O |
NT_023676 | AC022749 | 71857324 | 1 | chr8 | NT_023676 | AC079094 | 71942992 | 1 | 18490 | 0 | 0 | 18490 |
| S/G/Y/R/B/O |
NT_023676 | AC022749 | 71857324 | 1 |   |   | AC022790 | 71717618 | 2 | 87667 | 0 | 0 | 87667 |
| S/G/Y/R/B/O |
NT_023676 | AC027114 | 71903781 | 1 | chr8 | NT_023676 | AC079094 | 71942992 | 1 | 57639 | 0 | 0 | 57639 |
| S/G/Y/R/B/O |
NT_023676 | AC027114 | 71903781 | 1 | chr8 | NT_023676 | AC021785 | 71717618 | 3 | 54585 | 0 | 42273 | 96858 |
| S/G/Y/R/B/O |
NT_023676 | AC027114 | 71903781 | 1 | chr8 | NT_023676 | AC084707 | 72201562 | 1 | 32689 | 0 | 0 | 32689 |
| S/G/Y/R/B/O |
NT_023676 | AC027114 | 71903781 | 1 |   |   | AC022790 | 71857324 | 2 | 127245 | 0 | 0 | 127245 |
| S/G/Y/R/B/O |
NT_023676 | AC079094 | 71942992 | 1 | chr8 | NT_023676 | AC013746 | 71957341 | 3 | 119291 | 0 | 800 | 120091 |
| S/G/Y/R/B/O |
NT_023676 | AC079094 | 71942992 | 1 | chr8 | NT_023676 | AC022749 | 71857324 | 1 | 18490 | 0 | 0 | 18490 |
| S/G/Y/R/B/O |
NT_023676 | AC079094 | 71942992 | 1 | chr8 | NT_023676 | AC084707 | 72201562 | 1 | 158358 | 5227 | 4689 | 168274 |
| S/G/Y/R/B/O |
NT_023676 | AC079094 | 71942992 | 1 |   |   | AC022790 | 71857324 | 2 | 95771 | 0 | 0 | 95771 |
| S/G/Y/R/B/O |
NT_023676 | AC013746 | 71957341 | 3 | chr8 | NT_023676 | AC091047 | 72169678 | 1 | 36122 | 0 | 0 | 36122 |
| S/G/Y/R/B/O |
NT_023676 | AC013746 | 71957341 | 3 | chr8 | NT_023676 | AC084707 | 72201562 | 1 | 96226 | 5227 | 4731 | 106184 |
| S/G/Y/R/B/O |
NT_023676 | AC013746 | 71957341 | 3 | chr8 | NT_023676 | AC090690 | 72200901 | 1 | 145452 | 0 | 0 | 145452 |
| S/G/Y/R/B/O |
NT_023676 | AC013746 | 71957341 | 3 |   |   | AC022790 | 72200901 | 2 | 31465 | 0 | 0 | 31465 |
| S/G/Y/R/B/O |
NT_023676 | AC091047 | 72169678 | 1 | chr8 | NT_023676 | AC090690 | 72200901 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023676 | AC091047 | 72169678 | 1 | chr8 | NT_023676 | AC024680 | 72297331 | 1 | 64083 | 0 | 0 | 64083 |
| S/G/Y/R/B/O |
NT_023676 | AC090690 | 72200901 | 1 | chr8 | NT_023676 | AC084707 | 72201562 | 1 | 78864 | 5227 | 4731 | 88822 |
| S/G/Y/R/B/O |
NT_023676 | AC090690 | 72200901 | 1 | chr8 | NT_023676 | AC013746 | 71957341 | 3 | 145452 | 0 | 0 | 145452 |
| S/G/Y/R/B/O |
NT_023676 | AC090690 | 72200901 | 1 |   |   | AC022790 | 71957341 | 2 | 46615 | 0 | 560 | 47175 |
| S/G/Y/R/B/O |
NT_023676 | AC084707 | 72201562 | 1 | chr8 | NT_023676 | AC024680 | 72297331 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023676 | AC084707 | 72201562 | 1 | chr8 | NT_023676 | AC013746 | 71957341 | 3 | 96226 | 5227 | 4731 | 106184 |
| S/G/Y/R/B/O |
NT_023676 | AC084707 | 72201562 | 1 | chr8 | NT_023676 | AC027114 | 71903781 | 1 | 32689 | 0 | 0 | 32689 |
| S/G/Y/R/B/O |
NT_023676 | AC084707 | 72201562 | 1 | chr8 | NT_023676 | AC079094 | 71942992 | 1 | 158358 | 5227 | 4689 | 168274 |
| S/G/Y/R/B/O |
NT_023676 | AC084707 | 72201562 | 1 |   |   | AC022790 | 71857324 | 2 | 104321 | 5227 | 4730 | 114278 |
| S/G/Y/R/B/O |
NT_023676 | AC024680 | 72297331 | 1 | chr8 | NT_023676 | AC079089 | 72316610 | 3 | 83821 | 0 | 21615 | 105436 |
| S/G/Y/R/B/O |
NT_023676 | AC024680 | 72297331 | 1 | chr8 | NT_023676 | AC091047 | 72169678 | 1 | 64083 | 0 | 0 | 64083 |
| S/G/Y/R/B/O |
NT_023676 | AC079089 | 72316610 | 3 | chr8 | NT_023676 | AC013364 | 72439364 | 1 | 42797 | 0 | 0 | 42797 |
| S/G/Y/R/B/O |
NT_023676 | AC013364 | 72439364 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_023676 | AC013364 | 72439364 | 1 | chr8 | NT_023676 | AC018740 | 71485887 | 1 | 83239 | 5848 | 36824 | 125911 |
| S/G/Y/R/B/O |
NT_023676 | AC013364 | 72439364 | 1 | chr8 | NT_023676 | AC084251 | 71400275 | 1 | 36451 | 0 | 23127 | 59578 |
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