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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_023742 | AC021548 | 114920127 | 1 | chr8 | NT_023742 | AC105038 | 114994023 | 2 | 90817 | 1637 | 1119 | 93573 |
| S/G/Y/R/B/O |
NT_023742 | AC021548 | 114920127 | 1 | chr8 | NT_008289 | AC040965 | 114683294 | 2 | 89037 | 6788 | 1114 | 96939 |
| S/G/Y/R/B/O |
NT_023742 | AC021548 | 114920127 | 1 | chr8 | NT_023742 | AC068954 | 115080654 | 3 | 20954 | 0 | 0 | 20954 |
| S/G/Y/R/B/O |
NT_023742 | AC105038 | 114994023 | 2 | chr8 | NT_023742 | AC068954 | 115080654 | 3 | 9010 | 0 | 0 | 9010 |
| S/G/Y/R/B/O |
NT_023742 | AC105038 | 114994023 | 2 | chr8 | NT_008289 | AC040965 | 114683294 | 2 | 27795 | 0 | 0 | 27795 |
| S/G/Y/R/B/O |
NT_023742 | AC068954 | 115080654 | 3 | chr8 | NT_023742 | AC007719 | 115244195 | 3 | 14996 | 0 | 0 | 14996 |
| S/G/Y/R/B/O |
NT_023742 | AC068954 | 115080654 | 3 | chr8 | NT_023742 | AC021548 | 114920127 | 1 | 20954 | 0 | 0 | 20954 |
| S/G/Y/R/B/O |
NT_023742 | AC007719 | 115244195 | 3 | chr8 | NT_023742 | AC024996 | 115379932 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023742 | AC024996 | 115379932 | 3 | chr8 | NT_023742 | AC087710 | 115556391 | 2 | 81907 | 0 | 0 | 81907 |
| S/G/Y/R/B/O |
NT_023742 | AC024996 | 115379932 | 3 |   |   | AC019042 | 115080654 | 1 | 71287 | 0 | 0 | 71287 |
| S/G/Y/R/B/O |
NT_023742 | AC087710 | 115556391 | 2 | chr8 | NT_023742 | AP002979 | 115572076 | 3 | 0 | 0 | 70484 | 70484 |
| S/G/Y/R/B/O |
NT_023742 | AC087710 | 115556391 | 2 |   |   | AC019042 | 115556391 | 1 | 157576 | 0 | 10348 | 167924 |
| S/G/Y/R/B/O |
NT_023742 | AP002979 | 115572076 | 3 | chr8 | NT_023742 | AC104380 | 115725723 | 3 | 87547 | 0 | 0 | 87547 |
| S/G/Y/R/B/O |
NT_023742 | AP002979 | 115572076 | 3 |   |   | AC019042 | 115572076 | 1 | 42308 | 0 | 10317 | 52625 |
| S/G/Y/R/B/O |
NT_023742 | AC104380 | 115725723 | 3 | chr8 | NT_023742 | AP003470 | 115797579 | 3 | 45790 | 0 | 0 | 45790 |
| S/G/Y/R/B/O |
NT_023742 | AC104380 | 115725723 | 3 |   |   | AP002846 | 115556391 | 3 | 28049 | 0 | 0 | 28049 |
| S/G/Y/R/B/O |
NT_023742 | AC104380 | 115725723 | 3 |   |   | AP005017 | 115797579 | 3 | 39070 | 0 | 0 | 39070 |
| S/G/Y/R/B/O |
NT_023742 | AP003470 | 115797579 | 3 | chr8 | NT_023742 | AC009424 | 115909448 | 3 | 120934 | 0 | 0 | 120934 |
| S/G/Y/R/B/O |
NT_023742 | AP003470 | 115797579 | 3 |   |   | AP002846 | 115725723 | 3 | 139928 | 0 | 0 | 139928 |
| S/G/Y/R/B/O |
NT_023742 | AC009424 | 115909448 | 3 | chr8 | NT_023742 | AC021264 | 115927926 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023742 | AC009424 | 115909448 | 3 |   |   | AP002846 | 115725723 | 3 | 139385 | 0 | 0 | 139385 |
| S/G/Y/R/B/O |
NT_023742 | AC021264 | 115927926 | 3 | chr8 | NT_023742 | AC027189 | 116043008 | 3 | 24580 | 0 | 0 | 24580 |
| S/G/Y/R/B/O |
NT_023742 | AC021264 | 115927926 | 3 |   |   | AP002846 | 116043008 | 3 | 20568 | 0 | 0 | 20568 |
| S/G/Y/R/B/O |
NT_023742 | AC027189 | 116043008 | 3 | chr8 | NT_023742 | AC022605 | 116175752 | 2 | 90612 | 0 | 0 | 90612 |
| S/G/Y/R/B/O |
NT_023742 | AC027189 | 116043008 | 3 | chr8 | NT_023742 | AC067903 | 116254015 | 3 | 22298 | 0 | 0 | 22298 |
| S/G/Y/R/B/O |
NT_023742 | AC027189 | 116043008 | 3 | chr8 | NT_023742 | AC069181 | 116508402 | 1 | 17506 | 0 | 0 | 17506 |
| S/G/Y/R/B/O |
NT_023742 | AC022605 | 116175752 | 2 | chr8 | NT_023742 | AC067903 | 116254015 | 3 | 100560 | 0 | 0 | 100560 |
| S/G/Y/R/B/O |
NT_023742 | AC022605 | 116175752 | 2 | chr8 | NT_023742 | AC069181 | 116508402 | 1 | 64958 | 4113 | 1020 | 70091 |
| S/G/Y/R/B/O |
NT_023742 | AC022605 | 116175752 | 2 |   |   | AP004713 | 116508402 | 2 | 117973 | 0 | 0 | 117973 |
| S/G/Y/R/B/O |
NT_023742 | AC067903 | 116254015 | 3 | chr8 | NT_023742 | AC107890 | 116351865 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023742 | AC067903 | 116254015 | 3 | chr8 | NT_023742 | AC027189 | 116043008 | 3 | 22298 | 0 | 0 | 22298 |
| S/G/Y/R/B/O |
NT_023742 | AC067903 | 116254015 | 3 | chr8 | NT_023742 | AC069181 | 116508402 | 1 | 112006 | 10678 | 9926 | 132610 |
| S/G/Y/R/B/O |
NT_023742 | AC067903 | 116254015 | 3 |   |   | AP004713 | 116508402 | 2 | 127236 | 0 | 0 | 127236 |
| S/G/Y/R/B/O |
NT_023742 | AC067903 | 116254015 | 3 |   |   | AP005015 | 116508402 | 3 | 71758 | 0 | 0 | 71758 |
| S/G/Y/R/B/O |
NT_023742 | AC107890 | 116351865 | 3 | chr8 | NT_023742 | AC055788 | 116484385 | 2 | 72629 | 0 | 0 | 72629 |
| S/G/Y/R/B/O |
NT_023742 | AC107890 | 116351865 | 3 | chr8 | NT_023742 | AC069181 | 116508402 | 1 | 19638 | 0 | 5504 | 25142 |
| S/G/Y/R/B/O |
NT_023742 | AC107890 | 116351865 | 3 |   |   | AC022204 | 116508402 | 1 | 103856 | 0 | 14996 | 118852 |
| S/G/Y/R/B/O |
NT_023742 | AC107890 | 116351865 | 3 |   |   | AP005015 | 116508402 | 3 | 107471 | 0 | 0 | 107471 |
| S/G/Y/R/B/O |
NT_023742 | AC055788 | 116484385 | 2 | chr8 | NT_023742 | AC084341 | 116508293 | 1 | 72525 | 0 | 0 | 72525 |
| S/G/Y/R/B/O |
NT_023742 | AC055788 | 116484385 | 2 |   |   | AC022204 | 116508402 | 1 | 99271 | 0 | 0 | 99271 |
| S/G/Y/R/B/O |
NT_023742 | AC084341 | 116508293 | 1 | chr8 | NT_023742 | AC069181 | 116508402 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023742 | AC084341 | 116508293 | 1 | chr8 | NT_023742 | AC103993 | 116647944 | 2 | 21875 | 0 | 0 | 21875 |
| S/G/Y/R/B/O |
NT_023742 | AC084341 | 116508293 | 1 |   |   | AC022204 | 116351865 | 1 | 48295 | 0 | 0 | 48295 |
| S/G/Y/R/B/O |
NT_023742 | AC069181 | 116508402 | 1 | chr8 | NT_023742 | AC103993 | 116647944 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023742 | AC069181 | 116508402 | 1 | chr8 | NT_023742 | AC022605 | 116175752 | 2 | 64958 | 4113 | 1020 | 70091 |
| S/G/Y/R/B/O |
NT_023742 | AC069181 | 116508402 | 1 | chr8 | NT_023742 | AC027189 | 116043008 | 3 | 17506 | 0 | 0 | 17506 |
| S/G/Y/R/B/O |
NT_023742 | AC069181 | 116508402 | 1 | chr8 | NT_023742 | AC067903 | 116254015 | 3 | 112006 | 10678 | 9926 | 132610 |
| S/G/Y/R/B/O |
NT_023742 | AC069181 | 116508402 | 1 | chr8 | NT_023742 | AC107890 | 116351865 | 3 | 19638 | 0 | 5504 | 25142 |
| S/G/Y/R/B/O |
NT_023742 | AC069181 | 116508402 | 1 |   |   | AP004713 | 116351865 | 2 | 92917 | 11367 | 5472 | 109756 |
| S/G/Y/R/B/O |
NT_023742 | AC069181 | 116508402 | 1 |   |   | AP005015 | 116351865 | 3 | 45499 | 1923 | 6557 | 53979 |
| S/G/Y/R/B/O |
NT_023742 | AC103993 | 116647944 | 2 | chr8 | NT_023742 | AC015866 | 116691188 | 3 | 82456 | 0 | 0 | 82456 |
| S/G/Y/R/B/O |
NT_023742 | AC103993 | 116647944 | 2 | chr8 | NT_023742 | AC046175 | 116841752 | 3 | 19326 | 0 | 0 | 19326 |
| S/G/Y/R/B/O |
NT_023742 | AC103993 | 116647944 | 2 | chr8 | NT_023742 | AC084341 | 116508293 | 1 | 21875 | 0 | 0 | 21875 |
| S/G/Y/R/B/O |
NT_023742 | AC103993 | 116647944 | 2 |   |   | AC018991 | 116691188 | 2 | 19326 | 0 | 0 | 19326 |
| S/G/Y/R/B/O |
NT_023742 | AC015866 | 116691188 | 3 | chr8 | NT_023742 | AC046175 | 116841752 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023742 | AC015866 | 116691188 | 3 |   |   | AC018991 | 54996188 | 2 | 135036 | 0 | 0 | 135036 |
| S/G/Y/R/B/O |
NT_023742 | AC046175 | 116841752 | 3 | chr8 | NT_023742 | AC046174 | 116927776 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_023742 | AC046175 | 116841752 | 3 | chr8 | NT_023742 | AC103993 | 116647944 | 2 | 19326 | 0 | 0 | 19326 |
| S/G/Y/R/B/O |
NT_023742 | AC046175 | 116841752 | 3 |   |   | AC018991 | 116647944 | 2 | 147929 | 0 | 0 | 147929 |
| S/G/Y/R/B/O |
NT_023742 | AC046175 | 116841752 | 3 |   |   | AC090102 | 116647944 | 1 | 86018 | 0 | 0 | 86018 |
| S/G/Y/R/B/O |
NT_023742 | AC046174 | 116927776 | 2 | chr8 | NT_023742 | AC104246 | 117082145 | 2 | 58546 | 0 | 0 | 58546 |
| S/G/Y/R/B/O |
NT_023742 | AC046174 | 116927776 | 2 |   |   | AC090102 | 116647944 | 1 | 85106 | 0 | 2617 | 87723 |
| S/G/Y/R/B/O |
NT_023742 | AC104246 | 117082145 | 2 |   |   |   |   |   |   |   |   |   |
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