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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008176 | AF271408 | 40310367 | 1 | chr8 | NT_008176 | AC007991 | 40315933 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008176 | AF271408 | 40310367 | 1 | chr3 | NT_022411 | AC026957 | 128967595 | 1 | 12753 | 0 | 0 | 12753 |
| S/G/Y/R/B/O |
NT_008176 | AF271408 | 40310367 | 1 | chr3 | NT_022411 | AC069047 | 128713734 | 1 | 80700 | 3498 | 2264 | 86462 |
| S/G/Y/R/B/O |
NT_008176 | AF271408 | 40310367 | 1 | chr3 | NT_022411 | AC092902 | 128642548 | 1 | 83874 | 0 | 0 | 83874 |
| S/G/Y/R/B/O |
NT_008176 | AF271408 | 40310367 | 1 | chr3 | NT_022411 | AC092903 | 128783858 | 1 | 23667 | 0 | 0 | 23667 |
| S/G/Y/R/B/O |
NT_008176 | AF271408 | 40310367 | 1 | chr3 | NT_022411 | AF061779 | 128660452 | 3 | 32934 | 0 | 0 | 32934 |
| S/G/Y/R/B/O |
NT_008176 | AC007991 | 40315933 | 3 | chr8 | NT_008176 | AC087518 | 40464941 | 1 | 57433 | 0 | 0 | 57433 |
| S/G/Y/R/B/O |
NT_008176 | AC007991 | 40315933 | 3 |   |   | AF302687 | 40464941 | 1 | 26961 | 0 | 0 | 26961 |
| S/G/Y/R/B/O |
NT_008176 | AC087518 | 40464941 | 1 | chr8 | NT_008176 | AC022733 | 40512890 | 3 | 53827 | 1791 | 0 | 55618 |
| S/G/Y/R/B/O |
NT_008176 | AC087518 | 40464941 | 1 |   |   | AF302687 | 40512890 | 1 | 91929 | 0 | 0 | 91929 |
| S/G/Y/R/B/O |
NT_008176 | AC022733 | 40512890 | 3 | chr8 | NT_008176 | AC091560 | 40633847 | 3 | 31285 | 0 | 0 | 31285 |
| S/G/Y/R/B/O |
NT_008176 | AC022733 | 40512890 | 3 |   |   | AC019331 | 40512890 | 1 | 24393 | 1641 | 0 | 26034 |
| S/G/Y/R/B/O |
NT_008176 | AC022733 | 40512890 | 3 |   |   | AF290942 | 40633847 | 1 | 46715 | 0 | 0 | 46715 |
| S/G/Y/R/B/O |
NT_008176 | AC022733 | 40512890 | 3 |   |   | AF302687 | 40633847 | 1 | 46728 | 1698 | 0 | 48426 |
| S/G/Y/R/B/O |
NT_008176 | AC091560 | 40633847 | 3 | chr8 | NT_008176 | AF165142 | 40824130 | 3 | 68729 | 0 | 0 | 68729 |
| S/G/Y/R/B/O |
NT_008176 | AC091560 | 40633847 | 3 |   |   | AC019331 | 40633847 | 1 | 174979 | 1641 | 2042 | 178662 |
| S/G/Y/R/B/O |
NT_008176 | AC091560 | 40633847 | 3 |   |   | AC105999 | 40512890 | 2 | 68741 | 0 | 0 | 68741 |
| S/G/Y/R/B/O |
NT_008176 | AC091560 | 40633847 | 3 |   |   | AF290942 | 40824130 | 1 | 128247 | 0 | 0 | 128247 |
| S/G/Y/R/B/O |
NT_008176 | AF165142 | 40824130 | 3 | chr8 | NT_008176 | AC010857 | 40827322 | 3 | 33397 | 0 | 0 | 33397 |
| S/G/Y/R/B/O |
NT_008176 | AF165142 | 40824130 | 3 |   |   | AC019331 | 40827322 | 1 | 45920 | 0 | 0 | 45920 |
| S/G/Y/R/B/O |
NT_008176 | AF165142 | 40824130 | 3 |   |   | AC105999 | 40633847 | 2 | 105450 | 0 | 0 | 105450 |
| S/G/Y/R/B/O |
NT_008176 | AC010857 | 40827322 | 3 | chr8 | NT_008176 | AC018796 | 40982386 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008176 | AC010857 | 40827322 | 3 |   |   | AC084224 | 41128574 | 1 | 53317 | 3724 | 0 | 57041 |
| S/G/Y/R/B/O |
NT_008176 | AC010857 | 40827322 | 3 |   |   | AC087754 | 41128574 | 1 | 59288 | 2597 | 912 | 62797 |
| S/G/Y/R/B/O |
NT_008176 | AC010857 | 40827322 | 3 |   |   | AC105999 | 41128574 | 2 | 33401 | 0 | 0 | 33401 |
| S/G/Y/R/B/O |
NT_008176 | AC018796 | 40982386 | 2 | chr8 | NT_008176 | AC016344 | 41128574 | 1 | 101535 | 8468 | 2342 | 112345 |
| S/G/Y/R/B/O |
NT_008176 | AC018796 | 40982386 | 2 | chr8 | NT_008176 | AC104864 | 41146117 | 2 | 27878 | 0 | 0 | 27878 |
| S/G/Y/R/B/O |
NT_008176 | AC018796 | 40982386 | 2 |   |   | AC084224 | 41128574 | 1 | 111976 | 0 | 2798 | 114774 |
| S/G/Y/R/B/O |
NT_008176 | AC016344 | 41128574 | 1 | chr8 | NT_008176 | AC104864 | 41146117 | 2 | 45146 | 0 | 0 | 45146 |
| S/G/Y/R/B/O |
NT_008176 | AC016344 | 41128574 | 1 |   |   | AC084224 | 40982386 | 1 | 71650 | 4678 | 15309 | 91637 |
| S/G/Y/R/B/O |
NT_008176 | AC104864 | 41146117 | 2 | chr8 | NT_008176 | AC048387 | 41382614 | 1 | 11321 | 0 | 0 | 11321 |
| S/G/Y/R/B/O |
NT_008176 | AC104864 | 41146117 | 2 | chr8 | NT_008176 | AC018796 | 40982386 | 2 | 27878 | 0 | 0 | 27878 |
| S/G/Y/R/B/O |
NT_008176 | AC048387 | 41382614 | 1 | chr8 | NT_008176 | AC020736 | 41570079 | 1 | 34903 | 0 | 12038 | 46941 |
| S/G/Y/R/B/O |
NT_008176 | AC020736 | 41570079 | 1 | chr8 | NT_008176 | AC087274 | 41653047 | 1 | 49636 | 1712 | 43391 | 94739 |
| S/G/Y/R/B/O |
NT_008176 | AC087274 | 41653047 | 1 | chr8 | NT_008176 | AC104393 | 41764791 | 2 | 7024 | 0 | 0 | 7024 |
| S/G/Y/R/B/O |
NT_008176 | AC104393 | 41764791 | 2 | chr8 | NT_008176 | AC016868 | 41927691 | 2 | 18509 | 0 | 0 | 18509 |
| S/G/Y/R/B/O |
NT_008176 | AC016868 | 41927691 | 2 | chr8 | NT_008176 | AC009630 | 42083382 | 3 | 18906 | 0 | 0 | 18906 |
| S/G/Y/R/B/O |
NT_008176 | AC009630 | 42083382 | 3 | chr8 | NT_008176 | AC015649 | 42284094 | 1 | 0 | 1795 | 42264 | 44059 |
| S/G/Y/R/B/O |
NT_008176 | AC009630 | 42083382 | 3 | chr8 | NT_008176 | AC024027 | 42295923 | 1 | 32370 | 0 | 1544 | 33914 |
| S/G/Y/R/B/O |
NT_008176 | AC009630 | 42083382 | 3 |   |   | AC113133 | 42295923 | 2 | 26353 | 1722 | 0 | 28075 |
| S/G/Y/R/B/O |
NT_008176 | AC009630 | 42083382 | 3 |   |   | AF205590 | 42295923 | 1 | 58751 | 2575 | 9679 | 71005 |
| S/G/Y/R/B/O |
NT_008176 | AC015649 | 42284094 | 1 | chr8 | NT_008176 | AC024027 | 42295923 | 1 | 84466 | 7590 | 16989 | 109045 |
| S/G/Y/R/B/O |
NT_008176 | AC015649 | 42284094 | 1 |   |   | AC113133 | 176759771 | 2 | 145548 | 0 | 13540 | 159088 |
| S/G/Y/R/B/O |
NT_008176 | AC015649 | 42284094 | 1 |   |   | AF205590 | 176759771 | 1 | 21624 | 2579 | 0 | 24203 |
| S/G/Y/R/B/O |
NT_008176 | AC024027 | 42295923 | 1 | chr8 | NT_008176 | AC027702 | 42415840 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008176 | AC024027 | 42295923 | 1 | chr8 | NT_008176 | AC009630 | 42083382 | 3 | 32370 | 0 | 1544 | 33914 |
| S/G/Y/R/B/O |
NT_008176 | AC024027 | 42295923 | 1 |   |   | AC113133 | 146911770 | 2 | 92585 | 9086 | 14017 | 115688 |
| S/G/Y/R/B/O |
NT_008176 | AC027702 | 42415840 | 1 | chr8 | NT_008176 | AC008025 | 42501780 | 1 | 144203 | 0 | 2403 | 146606 |
| S/G/Y/R/B/O |
NT_008176 | AC027702 | 42415840 | 1 | chr8 | NT_008176 | AC023045 | 42715944 | 1 | 40289 | 6183 | 13090 | 59562 |
| S/G/Y/R/B/O |
NT_008176 | AC027702 | 42415840 | 1 | chr8 | NT_008176 | AC090571 | 42547863 | 2 | 78466 | 0 | 0 | 78466 |
| S/G/Y/R/B/O |
NT_008176 | AC008025 | 42501780 | 1 | chr8 | NT_008176 | AC090571 | 42547863 | 2 | 70069 | 0 | 0 | 70069 |
| S/G/Y/R/B/O |
NT_008176 | AC008025 | 42501780 | 1 | chr8 | NT_008176 | AC023045 | 42715944 | 1 | 40282 | 8028 | 12954 | 61264 |
| S/G/Y/R/B/O |
NT_008176 | AC008025 | 42501780 | 1 |   |   | AC113133 | 42547863 | 2 | 15141 | 0 | 0 | 15141 |
| S/G/Y/R/B/O |
NT_008176 | AC090571 | 42547863 | 2 | chr8 | NT_008176 | AC023045 | 42715944 | 1 | 129695 | 17630 | 27977 | 175302 |
| S/G/Y/R/B/O |
NT_008176 | AC090571 | 42547863 | 2 | chr8 | NT_008176 | AC027702 | 42415840 | 1 | 78466 | 0 | 0 | 78466 |
| S/G/Y/R/B/O |
NT_008176 | AC023045 | 42715944 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008176 | AC023045 | 42715944 | 1 | chr8 | NT_008176 | AC008025 | 42501780 | 1 | 40282 | 8028 | 12954 | 61264 |
| S/G/Y/R/B/O |
NT_008176 | AC023045 | 42715944 | 1 | chr8 | NT_008176 | AC027702 | 42415840 | 1 | 40289 | 6183 | 13090 | 59562 |
| S/G/Y/R/B/O |
NT_008176 | AC023045 | 42715944 | 1 |   |   | AF295015 | 42547863 | 1 | 12792 | 0 | 0 | 12792 |
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