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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008150 | AC090275 | 135913855 | 1 | chr8 | NT_008150 | AF215843 | 135917465 | 1 | 72026 | 0 | 1104 | 73130 |
| S/G/Y/R/B/O |
NT_008150 | AC090275 | 135913855 | 1 | chr8 | NT_008150 | AC011200 | 135941583 | 3 | 64606 | 0 | 1397 | 66003 |
| S/G/Y/R/B/O |
NT_008150 | AC090275 | 135913855 | 1 |   |   | AC090262 | 135941583 | 1 | 64606 | 0 | 2425 | 67031 |
| S/G/Y/R/B/O |
NT_008150 | AF215843 | 135917465 | 1 | chr8 | NT_008150 | AC011200 | 135941583 | 3 | 77404 | 0 | 0 | 77404 |
| S/G/Y/R/B/O |
NT_008150 | AF215843 | 135917465 | 1 |   |   | AC090262 | 135941583 | 1 | 62568 | 0 | 0 | 62568 |
| S/G/Y/R/B/O |
NT_008150 | AC011200 | 135941583 | 3 | chr8 | NT_008150 | AC021093 | 136102854 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008150 | AC011200 | 135941583 | 3 | chr8 | NT_008150 | AC090275 | 135913855 | 1 | 64606 | 0 | 1397 | 66003 |
| S/G/Y/R/B/O |
NT_008150 | AC011200 | 135941583 | 3 |   |   | AC090262 | 135913855 | 1 | 145022 | 4284 | 0 | 149306 |
| S/G/Y/R/B/O |
NT_008150 | AC021093 | 136102854 | 3 | chr8 | NT_008150 | AC084170 | 136256283 | 1 | 17652 | 0 | 0 | 17652 |
| S/G/Y/R/B/O |
NT_008150 | AC021093 | 136102854 | 3 | chr8 | NT_008150 | AC063940 | 136362274 | 1 | 16237 | 0 | 14298 | 30535 |
| S/G/Y/R/B/O |
NT_008150 | AC084170 | 136256283 | 1 | chr8 | NT_008150 | AC018540 | 136259913 | 1 | 124049 | 1860 | 0 | 125909 |
| S/G/Y/R/B/O |
NT_008150 | AC084170 | 136256283 | 1 | chr8 | NT_008150 | AC063940 | 136362274 | 1 | 62979 | 0 | 28435 | 91414 |
| S/G/Y/R/B/O |
NT_008150 | AC018540 | 136259913 | 1 | chr8 | NT_008150 | AC063940 | 136362274 | 1 | 64789 | 0 | 64548 | 129337 |
| S/G/Y/R/B/O |
NT_008150 | AC018540 | 136259913 | 1 | chr8 | NT_008150 | AF216667 | 136395056 | 3 | 53887 | 0 | 0 | 53887 |
| S/G/Y/R/B/O |
NT_008150 | AC018540 | 136259913 | 1 |   |   | AC090508 | 136256283 | 1 | 30448 | 1887 | 1425 | 33760 |
| S/G/Y/R/B/O |
NT_008150 | AC063940 | 136362274 | 1 | chr8 | NT_008150 | AF216667 | 136395056 | 3 | 11256 | 0 | 32234 | 43490 |
| S/G/Y/R/B/O |
NT_008150 | AC063940 | 136362274 | 1 | chr8 | NT_008150 | AC021093 | 136102854 | 3 | 16237 | 0 | 14298 | 30535 |
| S/G/Y/R/B/O |
NT_008150 | AC063940 | 136362274 | 1 | chr8 | NT_008150 | AC084170 | 136256283 | 1 | 62979 | 0 | 28435 | 91414 |
| S/G/Y/R/B/O |
NT_008150 | AF216667 | 136395056 | 3 | chr8 | NT_008150 | AF257497 | 136573838 | 3 | 72313 | 0 | 0 | 72313 |
| S/G/Y/R/B/O |
NT_008150 | AF216667 | 136395056 | 3 | chr8 | NT_008150 | AC018540 | 136259913 | 1 | 53887 | 0 | 0 | 53887 |
| S/G/Y/R/B/O |
NT_008150 | AF216667 | 136395056 | 3 |   |   | AC009622 | 136395056 | 3 | 50193 | 0 | 0 | 50193 |
| S/G/Y/R/B/O |
NT_008150 | AF216667 | 136395056 | 3 |   |   | AC090508 | 136256283 | 1 | 156451 | 0 | 1424 | 157875 |
| S/G/Y/R/B/O |
NT_008150 | AF257497 | 136573838 | 3 | chr8 | NT_008150 | AF228727 | 136588747 | 3 | 5746 | 0 | 0 | 5746 |
| S/G/Y/R/B/O |
NT_008150 | AF257497 | 136573838 | 3 |   |   | AC090508 | 136573838 | 1 | 19368 | 0 | 0 | 19368 |
| S/G/Y/R/B/O |
NT_008150 | AF228727 | 136588747 | 3 | chr8 | NT_008150 | AF230666 | 136704356 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008150 | AF228727 | 136588747 | 3 |   |   | AC009622 | 136588747 | 3 | 121104 | 0 | 0 | 121104 |
| S/G/Y/R/B/O |
NT_008150 | AF228727 | 136588747 | 3 |   |   | AC087820 | 136588747 | 1 | 97747 | 2123 | 0 | 99870 |
| S/G/Y/R/B/O |
NT_008150 | AF230666 | 136704356 | 3 | chr8 | NT_008150 | AF230667 | 136768272 | 3 | 23835 | 0 | 0 | 23835 |
| S/G/Y/R/B/O |
NT_008150 | AF230666 | 136704356 | 3 |   |   | AC009622 | 136573838 | 3 | 26022 | 0 | 0 | 26022 |
| S/G/Y/R/B/O |
NT_008150 | AF230666 | 136704356 | 3 |   |   | AC069434 | 136573838 | 1 | 29985 | 0 | 0 | 29985 |
| S/G/Y/R/B/O |
NT_008150 | AF230666 | 136704356 | 3 |   |   | AC087820 | 136573838 | 1 | 86790 | 0 | 0 | 86790 |
| S/G/Y/R/B/O |
NT_008150 | AF230666 | 136704356 | 3 |   |   | AF305873 | 136768272 | 3 | 86614 | 0 | 0 | 86614 |
| S/G/Y/R/B/O |
NT_008150 | AF230667 | 136768272 | 3 | chr8 | NT_008150 | AF305872 | 136841582 | 3 | 20421 | 0 | 0 | 20421 |
| S/G/Y/R/B/O |
NT_008150 | AF230667 | 136768272 | 3 |   |   | AC069434 | 136768272 | 1 | 43981 | 0 | 5229 | 49210 |
| S/G/Y/R/B/O |
NT_008150 | AF230667 | 136768272 | 3 |   |   | AC087820 | 136768272 | 1 | 38794 | 0 | 0 | 38794 |
| S/G/Y/R/B/O |
NT_008150 | AF305872 | 136841582 | 3 | chr8 | NT_008150 | AF235100 | 136955297 | 3 | 30927 | 0 | 0 | 30927 |
| S/G/Y/R/B/O |
NT_008150 | AF305872 | 136841582 | 3 |   |   | AC069434 | 136841582 | 1 | 83781 | 0 | 3937 | 87718 |
| S/G/Y/R/B/O |
NT_008150 | AF305872 | 136841582 | 3 |   |   | AC079020 | 136841582 | 1 | 89038 | 14676 | 8915 | 112629 |
| S/G/Y/R/B/O |
NT_008150 | AF305872 | 136841582 | 3 |   |   | AC090798 | 136841582 | 1 | 60118 | 0 | 1346 | 61464 |
| S/G/Y/R/B/O |
NT_008150 | AF235100 | 136955297 | 3 | chr8 | NT_008150 | AF192304 | 137053801 | 3 | 11716 | 0 | 0 | 11716 |
| S/G/Y/R/B/O |
NT_008150 | AF235100 | 136955297 | 3 |   |   | AC079020 | 136955297 | 1 | 45204 | 2849 | 3109 | 51162 |
| S/G/Y/R/B/O |
NT_008150 | AF235100 | 136955297 | 3 |   |   | AC090798 | 136955297 | 1 | 77991 | 0 | 2551 | 80542 |
| S/G/Y/R/B/O |
NT_008150 | AF192304 | 137053801 | 3 | chr8 | NT_008150 | AF186190 | 137219062 | 3 | 87515 | 0 | 0 | 87515 |
| S/G/Y/R/B/O |
NT_008150 | AF192304 | 137053801 | 3 |   |   | AC023088 | 136841582 | 1 | 124612 | 3648 | 0 | 128260 |
| S/G/Y/R/B/O |
NT_008150 | AF192304 | 137053801 | 3 |   |   | AC090768 | 136841582 | 2 | 159254 | 2124 | 8208 | 169586 |
| S/G/Y/R/B/O |
NT_008150 | AF186190 | 137219062 | 3 | chr8 | NT_008150 | AF186191 | 137283902 | 1 | 32029 | 0 | 0 | 32029 |
| S/G/Y/R/B/O |
NT_008150 | AF186190 | 137219062 | 3 |   |   | AC023088 | 136955297 | 1 | 68960 | 2656 | 589 | 72205 |
| S/G/Y/R/B/O |
NT_008150 | AF186190 | 137219062 | 3 |   |   | AC090768 | 136955297 | 2 | 68300 | 0 | 0 | 68300 |
| S/G/Y/R/B/O |
NT_008150 | AF186191 | 137283902 | 1 | chr8 | NT_008150 | AF155238 | 137292494 | 3 | 63129 | 0 | 0 | 63129 |
| S/G/Y/R/B/O |
NT_008150 | AF155238 | 137292494 | 3 | chr8 | NT_008150 | AC103706 | 137397399 | 3 | 62698 | 0 | 0 | 62698 |
| S/G/Y/R/B/O |
NT_008150 | AC103706 | 137397399 | 3 | chr8 | NT_008150 | AC068301 | 137523840 | 1 | 94011 | 3710 | 28542 | 126263 |
| S/G/Y/R/B/O |
NT_008150 | AC103706 | 137397399 | 3 |   |   | AC017097 | 137283902 | 1 | 55119 | 3430 | 1347 | 59896 |
| S/G/Y/R/B/O |
NT_008150 | AC103706 | 137397399 | 3 |   |   | AF212832 | 137292494 | 1 | 69485 | 0 | 3982 | 73467 |
| S/G/Y/R/B/O |
NT_008150 | AC068301 | 137523840 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008150 | AC068301 | 137523840 | 1 |   |   | AC017097 | 137292494 | 1 | 41900 | 3054 | 5936 | 50890 |
| S/G/Y/R/B/O |
NT_008150 | AC068301 | 137523840 | 1 |   |   | AF212832 | 137397399 | 1 | 14957 | 0 | 11989 | 26946 |
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