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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008048 | AC025519 | 110424185 | 3 | chr8 | NT_008048 | AC012346 | 110595649 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008048 | AC025519 | 110424185 | 3 | chr8 | NT_008144 | AC053479 | 109924517 | 2 | 114885 | 0 | 0 | 114885 |
| S/G/Y/R/B/O |
NT_008048 | AC025519 | 110424185 | 3 |   |   | AC083966 | 109924517 | 1 | 111557 | 0 | 0 | 111557 |
| S/G/Y/R/B/O |
NT_008048 | AC012346 | 110595649 | 2 | chr8 | NT_008048 | AC025508 | 110733644 | 2 | 40636 | 0 | 0 | 40636 |
| S/G/Y/R/B/O |
NT_008048 | AC012346 | 110595649 | 2 |   |   | AC083966 | 110733644 | 1 | 41239 | 0 | 0 | 41239 |
| S/G/Y/R/B/O |
NT_008048 | AC025508 | 110733644 | 2 | chr8 | NT_008048 | AP003479 | 110886596 | 3 | 10161 | 0 | 0 | 10161 |
| S/G/Y/R/B/O |
NT_008048 | AP003479 | 110886596 | 3 | chr8 | NT_008048 | AP001331 | 111022751 | 3 | 48747 | 0 | 0 | 48747 |
| S/G/Y/R/B/O |
NT_008048 | AP003479 | 110886596 | 3 |   |   | AC011813 | 110886596 | 3 | 74223 | 0 | 0 | 74223 |
| S/G/Y/R/B/O |
NT_008048 | AP003479 | 110886596 | 3 |   |   | AC018588 | 231456236 | 1 | 34690 | 0 | 0 | 34690 |
| S/G/Y/R/B/O |
NT_008048 | AP003479 | 110886596 | 3 |   |   | AC018885 | 231456236 | 1 | 75004 | 2992 | 20046 | 98042 |
| S/G/Y/R/B/O |
NT_008048 | AP001331 | 111022751 | 3 | chr8 | NT_008048 | AC087620 | 111181606 | 3 | 62867 | 0 | 0 | 62867 |
| S/G/Y/R/B/O |
NT_008048 | AP001331 | 111022751 | 3 |   |   | AC016997 | 111022751 | 1 | 33577 | 0 | 15879 | 49456 |
| S/G/Y/R/B/O |
NT_008048 | AP001331 | 111022751 | 3 |   |   | AC018588 | 111022751 | 1 | 144102 | 0 | 0 | 144102 |
| S/G/Y/R/B/O |
NT_008048 | AP001331 | 111022751 | 3 |   |   | AC018885 | 111022751 | 1 | 92213 | 0 | 17565 | 109778 |
| S/G/Y/R/B/O |
NT_008048 | AP001331 | 111022751 | 3 |   |   | AC020991 | 111022751 | 1 | 62867 | 0 | 0 | 62867 |
| S/G/Y/R/B/O |
NT_008048 | AP001331 | 111022751 | 3 |   |   | AC083931 | 111022751 | 1 | 70887 | 0 | 0 | 70887 |
| S/G/Y/R/B/O |
NT_008048 | AC087620 | 111181606 | 3 | chr8 | NT_008048 | AP002088 | 111272761 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008048 | AC087620 | 111181606 | 3 |   |   | AC016997 | 110886596 | 1 | 99850 | 3936 | 45061 | 148847 |
| S/G/Y/R/B/O |
NT_008048 | AC087620 | 111181606 | 3 |   |   | AC020991 | 110886596 | 1 | 154034 | 0 | 0 | 154034 |
| S/G/Y/R/B/O |
NT_008048 | AC087620 | 111181606 | 3 |   |   | AC083931 | 110886596 | 1 | 141221 | 2896 | 0 | 144117 |
| S/G/Y/R/B/O |
NT_008048 | AP002088 | 111272761 | 3 | chr8 | NT_008048 | AC022634 | 111446755 | 3 | 92361 | 0 | 0 | 92361 |
| S/G/Y/R/B/O |
NT_008048 | AC022634 | 111446755 | 3 | chr8 | NT_008048 | AC025962 | 111515978 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008048 | AC022634 | 111446755 | 3 |   |   | AP003697 | 111272761 | 3 | 15346 | 0 | 0 | 15346 |
| S/G/Y/R/B/O |
NT_008048 | AC025962 | 111515978 | 2 | chr8 | NT_008048 | AP003788 | 111671731 | 3 | 17426 | 0 | 0 | 17426 |
| S/G/Y/R/B/O |
NT_008048 | AC025962 | 111515978 | 2 |   |   | AC104247 | 111272761 | 2 | 68680 | 0 | 0 | 68680 |
| S/G/Y/R/B/O |
NT_008048 | AC025962 | 111515978 | 2 |   |   | AP003697 | 111272761 | 3 | 166776 | 0 | 0 | 166776 |
| S/G/Y/R/B/O |
NT_008048 | AP003788 | 111671731 | 3 | chr8 | NT_008048 | AP004580 | 111796531 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008048 | AP003788 | 111671731 | 3 |   |   | AC104247 | 111515978 | 2 | 117107 | 0 | 886 | 117993 |
| S/G/Y/R/B/O |
NT_008048 | AP003788 | 111671731 | 3 |   |   | AC104248 | 111515978 | 2 | 20746 | 0 | 0 | 20746 |
| S/G/Y/R/B/O |
NT_008048 | AP003788 | 111671731 | 3 |   |   | AC109632 | 111515978 | 2 | 79722 | 0 | 0 | 79722 |
| S/G/Y/R/B/O |
NT_008048 | AP003788 | 111671731 | 3 |   |   | AP003697 | 111515978 | 3 | 16819 | 0 | 0 | 16819 |
| S/G/Y/R/B/O |
NT_008048 | AP004580 | 111796531 | 3 | chr8 | NT_008048 | AC087435 | 111868878 | 3 | 90565 | 0 | 0 | 90565 |
| S/G/Y/R/B/O |
NT_008048 | AP004580 | 111796531 | 3 |   |   | AC104248 | 111868878 | 2 | 87700 | 0 | 0 | 87700 |
| S/G/Y/R/B/O |
NT_008048 | AP004580 | 111796531 | 3 |   |   | AC109632 | 111868878 | 2 | 77485 | 0 | 0 | 77485 |
| S/G/Y/R/B/O |
NT_008048 | AC087435 | 111868878 | 3 | chr8 | NT_008048 | AP004284 | 111919623 | 3 | 107635 | 0 | 0 | 107635 |
| S/G/Y/R/B/O |
NT_008048 | AC087435 | 111868878 | 3 | chr8 | NT_008048 | AC104945 | 111943790 | 3 | 83531 | 0 | 0 | 83531 |
| S/G/Y/R/B/O |
NT_008048 | AC087435 | 111868878 | 3 |   |   | AC104248 | 111868878 | 2 | 90676 | 0 | 0 | 90676 |
| S/G/Y/R/B/O |
NT_008048 | AP004284 | 111919623 | 3 | chr8 | NT_008048 | AC104945 | 111943790 | 3 | 120995 | 0 | 0 | 120995 |
| S/G/Y/R/B/O |
NT_008048 | AC104945 | 111943790 | 3 | chr8 | NT_008048 | AC021237 | 112106901 | 3 | 18211 | 0 | 0 | 18211 |
| S/G/Y/R/B/O |
NT_008048 | AC104945 | 111943790 | 3 | chr8 | NT_008048 | AC087435 | 111868878 | 3 | 83531 | 0 | 0 | 83531 |
| S/G/Y/R/B/O |
NT_008048 | AC104945 | 111943790 | 3 |   |   | AP004388 | 111919623 | 3 | 68340 | 0 | 0 | 68340 |
| S/G/Y/R/B/O |
NT_008048 | AC021237 | 112106901 | 3 | chr8 | NT_008048 | AC021001 | 112282874 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008048 | AC021237 | 112106901 | 3 |   |   | AF286886 | 111943790 | 2 | 126921 | 0 | 1346 | 128267 |
| S/G/Y/R/B/O |
NT_008048 | AC021237 | 112106901 | 3 |   |   | AP004388 | 111943790 | 3 | 115582 | 0 | 0 | 115582 |
| S/G/Y/R/B/O |
NT_008048 | AC021001 | 112282874 | 3 | chr8 | NT_008048 | AP000427 | 112434107 | 3 | 95201 | 0 | 0 | 95201 |
| S/G/Y/R/B/O |
NT_008048 | AP000427 | 112434107 | 3 | chr8 | NT_008048 | AP004292 | 112525889 | 3 | 63706 | 0 | 0 | 63706 |
| S/G/Y/R/B/O |
NT_008048 | AP000427 | 112434107 | 3 | chr8 | NT_008048 | AC079061 | 112821519 | 1 | 77404 | 1648 | 766 | 79818 |
| S/G/Y/R/B/O |
NT_008048 | AP004292 | 112525889 | 3 | chr8 | NT_008048 | AP004281 | 112620545 | 3 | 58933 | 0 | 0 | 58933 |
| S/G/Y/R/B/O |
NT_008048 | AP004292 | 112525889 | 3 | chr8 | NT_008048 | AC079061 | 112821519 | 1 | 133848 | 0 | 0 | 133848 |
| S/G/Y/R/B/O |
NT_008048 | AP004281 | 112620545 | 3 | chr8 | NT_008048 | AC023245 | 112700225 | 2 | 53963 | 0 | 0 | 53963 |
| S/G/Y/R/B/O |
NT_008048 | AP004281 | 112620545 | 3 | chr8 | NT_008048 | AC079061 | 112821519 | 1 | 70828 | 0 | 0 | 70828 |
| S/G/Y/R/B/O |
NT_008048 | AC023245 | 112700225 | 2 | chr8 | NT_008048 | AC079061 | 112821519 | 1 | 0 | 1366 | 0 | 1366 |
| S/G/Y/R/B/O |
NT_008048 | AC023245 | 112700225 | 2 |   |   | AC027451 | 112525889 | 2 | 159542 | 0 | 0 | 159542 |
| S/G/Y/R/B/O |
NT_008048 | AC079061 | 112821519 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008048 | AC079061 | 112821519 | 1 | chr8 | NT_008048 | AP000427 | 112434107 | 3 | 77404 | 1648 | 766 | 79818 |
| S/G/Y/R/B/O |
NT_008048 | AC079061 | 112821519 | 1 | chr8 | NT_008048 | AP004281 | 112620545 | 3 | 70828 | 0 | 0 | 70828 |
| S/G/Y/R/B/O |
NT_008048 | AC079061 | 112821519 | 1 | chr8 | NT_008048 | AP004292 | 112525889 | 3 | 133848 | 0 | 0 | 133848 |
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