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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_008101 | AC083971 | 54414025 | 1 | chr8 | NT_008101 | AC017038 | 54416345 | 1 | 81132 | 9887 | 13766 | 104785 |
| S/G/Y/R/B/O |
NT_008101 | AC083971 | 54414025 | 1 | chr8 | NT_008101 | AC027250 | 54647415 | 2 | 98550 | 0 | 0 | 98550 |
| S/G/Y/R/B/O |
NT_008101 | AC083971 | 54414025 | 1 | chr8 | NT_008101 | AC044836 | 54590414 | 1 | 44498 | 0 | 0 | 44498 |
| S/G/Y/R/B/O |
NT_008101 | AC083971 | 54414025 | 1 | chr8 | NT_008101 | AC090145 | 54596280 | 1 | 142373 | 2430 | 0 | 144803 |
| S/G/Y/R/B/O |
NT_008101 | AC083971 | 54414025 | 1 |   |   | AF295016 | 54596280 | 1 | 36528 | 5825 | 11706 | 54059 |
| S/G/Y/R/B/O |
NT_008101 | AC017038 | 54416345 | 1 | chr8 | NT_008101 | AC060764 | 54419038 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008101 | AC017038 | 54416345 | 1 | chr8 | NT_008101 | AC027250 | 54647415 | 2 | 87637 | 2035 | 17743 | 107415 |
| S/G/Y/R/B/O |
NT_008101 | AC017038 | 54416345 | 1 | chr8 | NT_008101 | AC044836 | 54590414 | 1 | 38585 | 2677 | 3545 | 44807 |
| S/G/Y/R/B/O |
NT_008101 | AC017038 | 54416345 | 1 | chr8 | NT_008101 | AC090145 | 54596280 | 1 | 95599 | 7602 | 21243 | 124444 |
| S/G/Y/R/B/O |
NT_008101 | AC017038 | 54416345 | 1 |   |   | AF295016 | 54596280 | 1 | 38016 | 2554 | 14634 | 55204 |
| S/G/Y/R/B/O |
NT_008101 | AC060764 | 54419038 | 1 | chr8 | NT_008101 | AC044836 | 54590414 | 1 | 0 | 0 | 111075 | 111075 |
| S/G/Y/R/B/O |
NT_008101 | AC044836 | 54590414 | 1 | chr8 | NT_008101 | AC090145 | 54596280 | 1 | 50963 | 1825 | 2310 | 55098 |
| S/G/Y/R/B/O |
NT_008101 | AC044836 | 54590414 | 1 | chr8 | NT_008101 | AC017038 | 54416345 | 1 | 38585 | 2677 | 3545 | 44807 |
| S/G/Y/R/B/O |
NT_008101 | AC044836 | 54590414 | 1 | chr8 | NT_008101 | AC083971 | 54414025 | 1 | 44498 | 0 | 0 | 44498 |
| S/G/Y/R/B/O |
NT_008101 | AC090145 | 54596280 | 1 | chr8 | NT_008101 | AC027250 | 54647415 | 2 | 126987 | 0 | 0 | 126987 |
| S/G/Y/R/B/O |
NT_008101 | AC090145 | 54596280 | 1 | chr8 | NT_008101 | AC017038 | 54416345 | 1 | 95599 | 7602 | 21243 | 124444 |
| S/G/Y/R/B/O |
NT_008101 | AC090145 | 54596280 | 1 | chr8 | NT_008101 | AC083971 | 54414025 | 1 | 142373 | 2430 | 0 | 144803 |
| S/G/Y/R/B/O |
NT_008101 | AC090145 | 54596280 | 1 |   |   | AF295016 | 54414025 | 1 | 44538 | 4045 | 38984 | 87567 |
| S/G/Y/R/B/O |
NT_008101 | AC027250 | 54647415 | 2 | chr8 | NT_008101 | AC091076 | 54821881 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008101 | AC027250 | 54647415 | 2 | chr8 | NT_008101 | AC017038 | 54416345 | 1 | 87637 | 2035 | 17743 | 107415 |
| S/G/Y/R/B/O |
NT_008101 | AC027250 | 54647415 | 2 | chr8 | NT_008101 | AC083971 | 54414025 | 1 | 98550 | 0 | 0 | 98550 |
| S/G/Y/R/B/O |
NT_008101 | AC027250 | 54647415 | 2 |   |   | AF295016 | 54596280 | 1 | 68159 | 5733 | 29039 | 102931 |
| S/G/Y/R/B/O |
NT_008101 | AC091076 | 54821881 | 2 | chr8 | NT_008101 | AF128525 | 54975527 | 3 | 8932 | 0 | 0 | 8932 |
| S/G/Y/R/B/O |
NT_008101 | AC091076 | 54821881 | 2 |   |   | AF215846 | 54975527 | 1 | 78902 | 0 | 80487 | 159389 |
| S/G/Y/R/B/O |
NT_008101 | AF128525 | 54975527 | 3 | chr8 | NT_008101 | AC090151 | 55072873 | 3 | 80978 | 0 | 0 | 80978 |
| S/G/Y/R/B/O |
NT_008101 | AF128525 | 54975527 | 3 |   |   | AC012461 | 54975527 | 1 | 62172 | 1544 | 0 | 63716 |
| S/G/Y/R/B/O |
NT_008101 | AF128525 | 54975527 | 3 |   |   | AC108921 | 54821881 | 2 | 45019 | 0 | 0 | 45019 |
| S/G/Y/R/B/O |
NT_008101 | AF128525 | 54975527 | 3 |   |   | AF198095 | 54821881 | 2 | 45005 | 0 | 0 | 45005 |
| S/G/Y/R/B/O |
NT_008101 | AC090151 | 55072873 | 3 | chr8 | NT_008101 | AC026032 | 55154067 | 1 | 8019 | 0 | 7412 | 15431 |
| S/G/Y/R/B/O |
NT_008101 | AC090151 | 55072873 | 3 |   |   | AC012461 | 54821881 | 1 | 136518 | 1546 | 22085 | 160149 |
| S/G/Y/R/B/O |
NT_008101 | AC090151 | 55072873 | 3 |   |   | AC036232 | 55154067 | 1 | 20604 | 0 | 0 | 20604 |
| S/G/Y/R/B/O |
NT_008101 | AC090151 | 55072873 | 3 |   |   | AC108921 | 55159114 | 2 | 59189 | 0 | 0 | 59189 |
| S/G/Y/R/B/O |
NT_008101 | AC090151 | 55072873 | 3 |   |   | AF198095 | 54975527 | 2 | 59172 | 0 | 0 | 59172 |
| S/G/Y/R/B/O |
NT_008101 | AC026032 | 55154067 | 1 | chr8 | NT_008101 | AC090137 | 55159114 | 1 | 112745 | 0 | 22309 | 135054 |
| S/G/Y/R/B/O |
NT_008101 | AC026032 | 55154067 | 1 | chr8 | NT_008101 | AC025236 | 55248135 | 1 | 79325 | 0 | 0 | 79325 |
| S/G/Y/R/B/O |
NT_008101 | AC026032 | 55154067 | 1 |   |   | AC036232 | 55248135 | 1 | 146395 | 0 | 16981 | 163376 |
| S/G/Y/R/B/O |
NT_008101 | AC026032 | 55154067 | 1 |   |   | AC091049 | 55072873 | 2 | 14513 | 0 | 14016 | 28529 |
| S/G/Y/R/B/O |
NT_008101 | AC090137 | 55159114 | 1 | chr8 | NT_008101 | AC025236 | 55248135 | 1 | 72201 | 2930 | 1686 | 76817 |
| S/G/Y/R/B/O |
NT_008101 | AC090137 | 55159114 | 1 |   |   | AC036232 | 55154067 | 1 | 164081 | 4280 | 941 | 169302 |
| S/G/Y/R/B/O |
NT_008101 | AC090137 | 55159114 | 1 |   |   | AC091049 | 55072873 | 2 | 37756 | 0 | 0 | 37756 |
| S/G/Y/R/B/O |
NT_008101 | AC025236 | 55248135 | 1 | chr8 | NT_008101 | AC084834 | 55317388 | 3 | 20898 | 0 | 0 | 20898 |
| S/G/Y/R/B/O |
NT_008101 | AC025236 | 55248135 | 1 | chr8 | NT_008101 | AC026032 | 55154067 | 1 | 79325 | 0 | 0 | 79325 |
| S/G/Y/R/B/O |
NT_008101 | AC025236 | 55248135 | 1 |   |   | AC036232 | 55154067 | 1 | 127776 | 5442 | 0 | 133218 |
| S/G/Y/R/B/O |
NT_008101 | AC025236 | 55248135 | 1 |   |   | AC091049 | 55159114 | 2 | 50064 | 0 | 1686 | 51750 |
| S/G/Y/R/B/O |
NT_008101 | AC084834 | 55317388 | 3 | chr8 | NT_008101 | AC022679 | 55470692 | 2 | 55527 | 0 | 0 | 55527 |
| S/G/Y/R/B/O |
NT_008101 | AC084834 | 55317388 | 3 |   |   | AC091049 | 55159114 | 2 | 126211 | 0 | 0 | 126211 |
| S/G/Y/R/B/O |
NT_008101 | AC022679 | 55470692 | 2 | chr8 | NT_008101 | AC068955 | 55575828 | 1 | 91021 | 0 | 64473 | 155494 |
| S/G/Y/R/B/O |
NT_008101 | AC022679 | 55470692 | 2 |   |   | AC091049 | 55317388 | 2 | 28621 | 0 | 0 | 28621 |
| S/G/Y/R/B/O |
NT_008101 | AC068955 | 55575828 | 1 | chr8 | NT_008101 | AF235101 | 55584389 | 1 | 2252 | 0 | 0 | 2252 |
| S/G/Y/R/B/O |
NT_008101 | AF235101 | 55584389 | 1 | chr8 | NT_008101 | AC103953 | 55596397 | 1 | 162253 | 1638 | 0 | 163891 |
| S/G/Y/R/B/O |
NT_008101 | AF235101 | 55584389 | 1 | chr8 | NT_008101 | AC022717 | 55750831 | 1 | 45753 | 1954 | 0 | 47707 |
| S/G/Y/R/B/O |
NT_008101 | AF235101 | 55584389 | 1 | chr8 | NT_008101 | AC027595 | 56032291 | 1 | 75764 | 0 | 0 | 75764 |
| S/G/Y/R/B/O |
NT_008101 | AF235101 | 55584389 | 1 | chr8 | NT_008101 | AF165144 | 55774713 | 3 | 17525 | 0 | 0 | 17525 |
| S/G/Y/R/B/O |
NT_008101 | AC103953 | 55596397 | 1 | chr8 | NT_008101 | AC022717 | 55750831 | 1 | 63913 | 1923 | 0 | 65836 |
| S/G/Y/R/B/O |
NT_008101 | AC103953 | 55596397 | 1 | chr8 | NT_008101 | AC027595 | 56032291 | 1 | 82896 | 0 | 2394 | 85290 |
| S/G/Y/R/B/O |
NT_008101 | AC022717 | 55750831 | 1 | chr8 | NT_008101 | AF165144 | 55774713 | 3 | 110265 | 0 | 0 | 110265 |
| S/G/Y/R/B/O |
NT_008101 | AC022717 | 55750831 | 1 | chr8 | NT_008101 | AC027595 | 56032291 | 1 | 165633 | 0 | 0 | 165633 |
| S/G/Y/R/B/O |
NT_008101 | AC022717 | 55750831 | 1 | chr8 | NT_008101 | AF235101 | 55584389 | 1 | 45753 | 1954 | 0 | 47707 |
| S/G/Y/R/B/O |
NT_008101 | AF165144 | 55774713 | 3 | chr8 | NT_008101 | AC090200 | 55885683 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_008101 | AF165144 | 55774713 | 3 | chr8 | NT_008101 | AC027595 | 56032291 | 1 | 110223 | 0 | 0 | 110223 |
| S/G/Y/R/B/O |
NT_008101 | AF165144 | 55774713 | 3 | chr8 | NT_008101 | AF235101 | 55584389 | 1 | 17525 | 0 | 0 | 17525 |
| S/G/Y/R/B/O |
NT_008101 | AC090200 | 55885683 | 3 | chr8 | NT_008101 | AC027595 | 56032291 | 1 | 18510 | 0 | 0 | 18510 |
| S/G/Y/R/B/O |
NT_008101 | AC090200 | 55885683 | 3 |   |   | AF254980 | 56032291 | 1 | 146309 | 0 | 1351 | 147660 |
| S/G/Y/R/B/O |
NT_008101 | AC027595 | 56032291 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_008101 | AC027595 | 56032291 | 1 | chr8 | NT_008101 | AC022717 | 55750831 | 1 | 165633 | 0 | 0 | 165633 |
| S/G/Y/R/B/O |
NT_008101 | AC027595 | 56032291 | 1 | chr8 | NT_008101 | AC103953 | 55596397 | 1 | 82896 | 0 | 2394 | 85290 |
| S/G/Y/R/B/O |
NT_008101 | AC027595 | 56032291 | 1 | chr8 | NT_008101 | AF165144 | 55774713 | 3 | 110223 | 0 | 0 | 110223 |
| S/G/Y/R/B/O |
NT_008101 | AC027595 | 56032291 | 1 | chr8 | NT_008101 | AF235101 | 55584389 | 1 | 75764 | 0 | 0 | 75764 |
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