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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010859 | AP001198 | 12956207 | 1 | chr18 | NT_010859 | AP001357 | 12979271 | 1 | 119927 | 1908 | 2325 | 124160 |
| S/G/Y/R/B/O |
NT_010859 | AP001198 | 12956207 | 1 | chr18 | NT_010859 | AP002505 | 13477011 | 1 | 25325 | 2624 | 0 | 27949 |
| S/G/Y/R/B/O |
NT_010859 | AP001357 | 12979271 | 1 | chr18 | NT_010859 | AC067860 | 13059348 | 1 | 42119 | 0 | 0 | 42119 |
| S/G/Y/R/B/O |
NT_010859 | AP001357 | 12979271 | 1 | chr18 | NT_010859 | AC069433 | 14054909 | 1 | 21926 | 0 | 23283 | 45209 |
| S/G/Y/R/B/O |
NT_010859 | AP001357 | 12979271 | 1 | chr18 | NT_010859 | AP002449 | 13082925 | 1 | 19066 | 13468 | 2126 | 34660 |
| S/G/Y/R/B/O |
NT_010859 | AC067860 | 13059348 | 1 | chr18 | NT_010859 | AP002449 | 13082925 | 1 | 44663 | 17911 | 13704 | 76278 |
| S/G/Y/R/B/O |
NT_010859 | AC067860 | 13059348 | 1 | chr18 | NT_010859 | AC069433 | 14054909 | 1 | 106763 | 2830 | 44489 | 154082 |
| S/G/Y/R/B/O |
NT_010859 | AP002449 | 13082925 | 1 | chr18 | NT_010859 | AP001010 | 13087235 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010859 | AP002449 | 13082925 | 1 | chr18 | NT_010859 | AC069433 | 14054909 | 1 | 38952 | 20343 | 30076 | 89371 |
| S/G/Y/R/B/O |
NT_010859 | AP002449 | 13082925 | 1 | chr18 | NT_010859 | AP001077 | 14404884 | 1 | 14367 | 0 | 3049 | 17416 |
| S/G/Y/R/B/O |
NT_010859 | AP002449 | 13082925 | 1 | chr18 | NT_010859 | AP001357 | 12979271 | 1 | 19066 | 13468 | 2126 | 34660 |
| S/G/Y/R/B/O |
NT_010859 | AP001010 | 13087235 | 1 | chr18 | NT_010859 | AC009827 | 13124336 | 1 | 23768 | 26307 | 9171 | 59246 |
| S/G/Y/R/B/O |
NT_010859 | AP001010 | 13087235 | 1 | chr18 | NT_010859 | AP001013 | 13172984 | 1 | 93417 | 18461 | 18999 | 130877 |
| S/G/Y/R/B/O |
NT_010859 | AP001010 | 13087235 | 1 | chr18 | NT_010859 | AP001268 | 13336241 | 1 | 45913 | 16076 | 20390 | 82379 |
| S/G/Y/R/B/O |
NT_010859 | AC009827 | 13124336 | 1 | chr18 | NT_010859 | AP001013 | 13172984 | 1 | 8236 | 7421 | 16410 | 32067 |
| S/G/Y/R/B/O |
NT_010859 | AP001013 | 13172984 | 1 | chr18 | NT_010859 | AP001009 | 13173107 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010859 | AP001013 | 13172984 | 1 | chr18 | NT_010859 | AP001010 | 13087235 | 1 | 93417 | 18461 | 18999 | 130877 |
| S/G/Y/R/B/O |
NT_010859 | AP001013 | 13172984 | 1 | chr18 | NT_010859 | AP001268 | 13336241 | 1 | 41154 | 10444 | 0 | 51598 |
| S/G/Y/R/B/O |
NT_010859 | AP001013 | 13172984 | 1 | chr18 | NT_010859 | AP001525 | 13176684 | 1 | 18961 | 2146 | 0 | 21107 |
| S/G/Y/R/B/O |
NT_010859 | AP001009 | 13173107 | 1 | chr18 | NT_010859 | AP001525 | 13176684 | 1 | 52673 | 7992 | 8392 | 69057 |
| S/G/Y/R/B/O |
NT_010859 | AP001009 | 13173107 | 1 | chr18 | NT_010859 | AP001086 | 13295265 | 1 | 55811 | 3502 | 15016 | 74329 |
| S/G/Y/R/B/O |
NT_010859 | AP001009 | 13173107 | 1 | chr18 | NT_010859 | AP002443 | 13552283 | 1 | 17244 | 955 | 3010 | 21209 |
| S/G/Y/R/B/O |
NT_010859 | AP001525 | 13176684 | 1 | chr18 | NT_010859 | AP001086 | 13295265 | 1 | 10649 | 603 | 1385 | 12637 |
| S/G/Y/R/B/O |
NT_010859 | AP001525 | 13176684 | 1 | chr18 | NT_010859 | AP001013 | 13172984 | 1 | 18961 | 2146 | 0 | 21107 |
| S/G/Y/R/B/O |
NT_010859 | AP001525 | 13176684 | 1 | chr18 | NT_010859 | AP001268 | 13336241 | 1 | 48496 | 4458 | 1068 | 54022 |
| S/G/Y/R/B/O |
NT_010859 | AP001086 | 13295265 | 1 | chr18 | NT_010859 | AP001268 | 13336241 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010859 | AP001086 | 13295265 | 1 | chr18 | NT_010859 | AP001009 | 13173107 | 1 | 55811 | 3502 | 15016 | 74329 |
| S/G/Y/R/B/O |
NT_010859 | AP001086 | 13295265 | 1 | chr18 | NT_010859 | AP002443 | 13552283 | 1 | 86932 | 4600 | 17079 | 108611 |
| S/G/Y/R/B/O |
NT_010859 | AP001268 | 13336241 | 1 | chr18 | NT_010859 | AC019156 | 13408010 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010859 | AP001268 | 13336241 | 1 | chr18 | NT_010859 | AP001010 | 13087235 | 1 | 45913 | 16076 | 20390 | 82379 |
| S/G/Y/R/B/O |
NT_010859 | AP001268 | 13336241 | 1 | chr18 | NT_010859 | AP001013 | 13172984 | 1 | 41154 | 10444 | 0 | 51598 |
| S/G/Y/R/B/O |
NT_010859 | AP001268 | 13336241 | 1 | chr18 | NT_010859 | AP001525 | 13176684 | 1 | 48496 | 4458 | 1068 | 54022 |
| S/G/Y/R/B/O |
NT_010859 | AC019156 | 13408010 | 1 | chr18 | NT_010859 | AP002439 | 13450461 | 1 | 125490 | 8342 | 11153 | 144985 |
| S/G/Y/R/B/O |
NT_010859 | AC019156 | 13408010 | 1 | chr18 | NT_010859 | AP002505 | 13477011 | 1 | 18385 | 4430 | 8734 | 31549 |
| S/G/Y/R/B/O |
NT_010859 | AP002439 | 13450461 | 1 | chr18 | NT_010859 | AP002505 | 13477011 | 1 | 44395 | 5132 | 15978 | 65505 |
| S/G/Y/R/B/O |
NT_010859 | AP002505 | 13477011 | 1 | chr18 | NT_010859 | AP002443 | 13552283 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010859 | AP002505 | 13477011 | 1 | chr18 | NT_010859 | AC019156 | 13408010 | 1 | 18385 | 4430 | 8734 | 31549 |
| S/G/Y/R/B/O |
NT_010859 | AP002505 | 13477011 | 1 | chr18 | NT_010859 | AP001198 | 12956207 | 1 | 25325 | 2624 | 0 | 27949 |
| S/G/Y/R/B/O |
NT_010859 | AP002443 | 13552283 | 1 | chr18 | NT_010859 | AC006557 | 13704392 | 3 | 44595 | 6030 | 5337 | 55962 |
| S/G/Y/R/B/O |
NT_010859 | AP002443 | 13552283 | 1 | chr18 | NT_010859 | AP001009 | 13173107 | 1 | 17244 | 955 | 3010 | 21209 |
| S/G/Y/R/B/O |
NT_010859 | AP002443 | 13552283 | 1 | chr18 | NT_010859 | AP001086 | 13295265 | 1 | 86932 | 4600 | 17079 | 108611 |
| S/G/Y/R/B/O |
NT_010859 | AC006557 | 13704392 | 3 | chr18 | NT_010859 | AP001004 | 13828632 | 1 | 90788 | 0 | 0 | 90788 |
| S/G/Y/R/B/O |
NT_010859 | AP001004 | 13828632 | 1 | chr18 | NT_010859 | AC027800 | 13875834 | 1 | 55976 | 0 | 0 | 55976 |
| S/G/Y/R/B/O |
NT_010859 | AC027800 | 13875834 | 1 | chr18 | NT_010859 | AC069433 | 14054909 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010859 | AC027800 | 13875834 | 1 | chr18 | NT_010859 | AC053538 | 14161945 | 1 | 47268 | 20118 | 9005 | 76391 |
| S/G/Y/R/B/O |
NT_010859 | AC069433 | 14054909 | 1 | chr18 | NT_010859 | AC053538 | 14161945 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010859 | AC069433 | 14054909 | 1 | chr18 | NT_010859 | AC067860 | 13059348 | 1 | 106763 | 2830 | 44489 | 154082 |
| S/G/Y/R/B/O |
NT_010859 | AC069433 | 14054909 | 1 | chr18 | NT_010859 | AP001357 | 12979271 | 1 | 21926 | 0 | 23283 | 45209 |
| S/G/Y/R/B/O |
NT_010859 | AC069433 | 14054909 | 1 | chr18 | NT_010859 | AP002449 | 13082925 | 1 | 38952 | 20343 | 30076 | 89371 |
| S/G/Y/R/B/O |
NT_010859 | AC053538 | 14161945 | 1 | chr18 | NT_010859 | AP001077 | 14404884 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010859 | AC053538 | 14161945 | 1 | chr18 | NT_010859 | AC027800 | 13875834 | 1 | 47268 | 20118 | 9005 | 76391 |
| S/G/Y/R/B/O |
NT_010859 | AP001077 | 14404884 | 1 | chr18 | NT_010859 | AC007734 | 14458161 | 1 | 82653 | 8255 | 20209 | 111117 |
| S/G/Y/R/B/O |
NT_010859 | AP001077 | 14404884 | 1 | chr18 | NT_010859 | AP002449 | 13082925 | 1 | 14367 | 0 | 3049 | 17416 |
| S/G/Y/R/B/O |
NT_010859 | AC007734 | 14458161 | 1 |   |   |   |   |   |   |   |   |   |
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