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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010988 | AC009266 | 41535594 | 1 | chr18 | NT_010988 | AC091039 | 41536999 | 2 | 128957 | 0 | 0 | 128957 |
| S/G/Y/R/B/O |
NT_010988 | AC009266 | 41535594 | 1 | chr18 | NT_010988 | AC015570 | 41768570 | 1 | 37854 | 2329 | 0 | 40183 |
| S/G/Y/R/B/O |
NT_010988 | AC009266 | 41535594 | 1 | chr18 | NT_010988 | AC087507 | 41743936 | 1 | 55318 | 0 | 0 | 55318 |
| S/G/Y/R/B/O |
NT_010988 | AC009266 | 41535594 | 1 | chr18 | NT_010988 | AP001797 | 41873034 | 1 | 44546 | 2342 | 994 | 47882 |
| S/G/Y/R/B/O |
NT_010988 | AC009266 | 41535594 | 1 |   |   | AC068125 | 41768570 | 1 | 82264 | 0 | 18461 | 100725 |
| S/G/Y/R/B/O |
NT_010988 | AC091039 | 41536999 | 2 | chr18 | NT_010988 | AC087507 | 41743936 | 1 | 16553 | 0 | 0 | 16553 |
| S/G/Y/R/B/O |
NT_010988 | AC091039 | 41536999 | 2 | chr18 | NT_010988 | AP001797 | 41873034 | 1 | 15360 | 0 | 844 | 16204 |
| S/G/Y/R/B/O |
NT_010988 | AC091039 | 41536999 | 2 |   |   | AC068125 | 41535594 | 1 | 124780 | 0 | 36030 | 160810 |
| S/G/Y/R/B/O |
NT_010988 | AC087507 | 41743936 | 1 | chr18 | NT_010988 | AC015570 | 41768570 | 1 | 97939 | 0 | 4311 | 102250 |
| S/G/Y/R/B/O |
NT_010988 | AC087507 | 41743936 | 1 | chr18 | NT_010988 | AC009266 | 41535594 | 1 | 55318 | 0 | 0 | 55318 |
| S/G/Y/R/B/O |
NT_010988 | AC087507 | 41743936 | 1 | chr18 | NT_010988 | AC022743 | 41882786 | 1 | 61034 | 0 | 0 | 61034 |
| S/G/Y/R/B/O |
NT_010988 | AC087507 | 41743936 | 1 | chr18 | NT_010988 | AP001797 | 41873034 | 1 | 120444 | 3427 | 1795 | 125666 |
| S/G/Y/R/B/O |
NT_010988 | AC087507 | 41743936 | 1 |   |   | AC011947 | 41535594 | 1 | 110720 | 0 | 790 | 111510 |
| S/G/Y/R/B/O |
NT_010988 | AC087507 | 41743936 | 1 |   |   | AC011949 | 41535594 | 1 | 60541 | 0 | 3324 | 63865 |
| S/G/Y/R/B/O |
NT_010988 | AC087507 | 41743936 | 1 |   |   | AC068125 | 41882786 | 1 | 12631 | 0 | 0 | 12631 |
| S/G/Y/R/B/O |
NT_010988 | AC015570 | 41768570 | 1 | chr18 | NT_010988 | AP001797 | 41873034 | 1 | 83548 | 2176 | 9485 | 95209 |
| S/G/Y/R/B/O |
NT_010988 | AC015570 | 41768570 | 1 | chr18 | NT_010988 | AC009266 | 41535594 | 1 | 37854 | 2329 | 0 | 40183 |
| S/G/Y/R/B/O |
NT_010988 | AC015570 | 41768570 | 1 | chr18 | NT_010988 | AC022743 | 41882786 | 1 | 15775 | 0 | 9292 | 25067 |
| S/G/Y/R/B/O |
NT_010988 | AC015570 | 41768570 | 1 |   |   | AC011947 | 41535594 | 1 | 49065 | 0 | 0 | 49065 |
| S/G/Y/R/B/O |
NT_010988 | AC015570 | 41768570 | 1 |   |   | AC011949 | 41535594 | 1 | 40090 | 0 | 0 | 40090 |
| S/G/Y/R/B/O |
NT_010988 | AP001797 | 41873034 | 1 | chr18 | NT_010988 | AC022743 | 41882786 | 1 | 44517 | 0 | 946 | 45463 |
| S/G/Y/R/B/O |
NT_010988 | AP001797 | 41873034 | 1 | chr18 | NT_010988 | AC009266 | 41535594 | 1 | 44546 | 2342 | 994 | 47882 |
| S/G/Y/R/B/O |
NT_010988 | AP001797 | 41873034 | 1 | chr18 | NT_010988 | AC087507 | 41743936 | 1 | 120444 | 3427 | 1795 | 125666 |
| S/G/Y/R/B/O |
NT_010988 | AP001797 | 41873034 | 1 | chr18 | NT_010988 | AC091039 | 41536999 | 2 | 15360 | 0 | 844 | 16204 |
| S/G/Y/R/B/O |
NT_010988 | AP001797 | 41873034 | 1 |   |   | AC011947 | 41535594 | 1 | 93676 | 3425 | 2013 | 99114 |
| S/G/Y/R/B/O |
NT_010988 | AP001797 | 41873034 | 1 |   |   | AC011949 | 41535594 | 1 | 64977 | 3989 | 1036 | 70002 |
| S/G/Y/R/B/O |
NT_010988 | AP001797 | 41873034 | 1 |   |   | AC068125 | 41882786 | 1 | 12631 | 0 | 0 | 12631 |
| S/G/Y/R/B/O |
NT_010988 | AC022743 | 41882786 | 1 | chr18 | NT_010988 | AC073843 | 41997736 | 1 | 52125 | 1890 | 0 | 54015 |
| S/G/Y/R/B/O |
NT_010988 | AC022743 | 41882786 | 1 | chr18 | NT_010988 | AC015570 | 41768570 | 1 | 15775 | 0 | 9292 | 25067 |
| S/G/Y/R/B/O |
NT_010988 | AC022743 | 41882786 | 1 | chr18 | NT_010988 | AC087507 | 41743936 | 1 | 61034 | 0 | 0 | 61034 |
| S/G/Y/R/B/O |
NT_010988 | AC022743 | 41882786 | 1 |   |   | AC011947 | 41536999 | 1 | 124690 | 0 | 0 | 124690 |
| S/G/Y/R/B/O |
NT_010988 | AC022743 | 41882786 | 1 |   |   | AC011949 | 41536999 | 1 | 92213 | 0 | 3324 | 95537 |
| S/G/Y/R/B/O |
NT_010988 | AC073843 | 41997736 | 1 | chr18 | NT_010988 | AC080085 | 42014130 | 1 | 0 | 2482 | 2461 | 4943 |
| S/G/Y/R/B/O |
NT_010988 | AC073843 | 41997736 | 1 | chr18 | NT_010988 | AC018517 | 42017459 | 3 | 88023 | 5165 | 9687 | 102875 |
| S/G/Y/R/B/O |
NT_010988 | AC073843 | 41997736 | 1 |   |   | AC013532 | 41873034 | 1 | 66221 | 5165 | 9682 | 81068 |
| S/G/Y/R/B/O |
NT_010988 | AC080085 | 42014130 | 1 | chr18 | NT_010988 | AC018517 | 42017459 | 3 | 54925 | 1686 | 45917 | 102528 |
| S/G/Y/R/B/O |
NT_010988 | AC080085 | 42014130 | 1 | chr18 | NT_010988 | AC021538 | 42198376 | 3 | 35994 | 0 | 8510 | 44504 |
| S/G/Y/R/B/O |
NT_010988 | AC080085 | 42014130 | 1 |   |   | AC013532 | 42014130 | 1 | 59989 | 1686 | 35934 | 97609 |
| S/G/Y/R/B/O |
NT_010988 | AC018517 | 42017459 | 3 | chr18 | NT_010988 | AC021538 | 42198376 | 3 | 3506 | 0 | 0 | 3506 |
| S/G/Y/R/B/O |
NT_010988 | AC018517 | 42017459 | 3 | chr18 | NT_010988 | AC073843 | 41997736 | 1 | 88023 | 5165 | 9687 | 102875 |
| S/G/Y/R/B/O |
NT_010988 | AC018517 | 42017459 | 3 |   |   | AC013532 | 41997736 | 1 | 179235 | 0 | 0 | 179235 |
| S/G/Y/R/B/O |
NT_010988 | AC021538 | 42198376 | 3 | chr18 | NT_010988 | AC113559 | 42364010 | 2 | 64744 | 0 | 0 | 64744 |
| S/G/Y/R/B/O |
NT_010988 | AC021538 | 42198376 | 3 | chr18 | NT_010988 | AC080085 | 42014130 | 1 | 35994 | 0 | 8510 | 44504 |
| S/G/Y/R/B/O |
NT_010988 | AC021538 | 42198376 | 3 |   |   | AC016195 | 42014130 | 1 | 36917 | 2996 | 0 | 39913 |
| S/G/Y/R/B/O |
NT_010988 | AC113559 | 42364010 | 2 | chr18 | NT_010988 | AC083760 | 42381633 | 2 | 62789 | 0 | 0 | 62789 |
| S/G/Y/R/B/O |
NT_010988 | AC113559 | 42364010 | 2 |   |   | AC016195 | 42483473 | 1 | 89735 | 2988 | 0 | 92723 |
| S/G/Y/R/B/O |
NT_010988 | AC083760 | 42381633 | 2 | chr18 | NT_010988 | AC024301 | 42491484 | 3 | 16134 | 0 | 0 | 16134 |
| S/G/Y/R/B/O |
NT_010988 | AC083760 | 42381633 | 2 |   |   | AC016195 | 42381633 | 1 | 77740 | 0 | 0 | 77740 |
| S/G/Y/R/B/O |
NT_010988 | AC083760 | 42381633 | 2 |   |   | AP001489 | 42364010 | 1 | 11078 | 0 | 0 | 11078 |
| S/G/Y/R/B/O |
NT_010988 | AC024301 | 42491484 | 3 | chr18 | NT_010988 | AC110014 | 42670615 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010988 | AC024301 | 42491484 | 3 | chr18 | NT_010988 | AC020722 | 42679961 | 1 | 35808 | 0 | 0 | 35808 |
| S/G/Y/R/B/O |
NT_010988 | AC024301 | 42491484 | 3 |   |   | AC067801 | 42679961 | 3 | 174932 | 0 | 0 | 174932 |
| S/G/Y/R/B/O |
NT_010988 | AC024301 | 42491484 | 3 |   |   | AP001489 | 42381633 | 1 | 158979 | 0 | 0 | 158979 |
| S/G/Y/R/B/O |
NT_010988 | AC110014 | 42670615 | 2 | chr18 | NT_010988 | AC020722 | 42679961 | 1 | 97712 | 2515 | 45280 | 145507 |
| S/G/Y/R/B/O |
NT_010988 | AC020722 | 42679961 | 1 | chr18 | NT_010988 | AC046181 | 42785849 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010988 | AC020722 | 42679961 | 1 | chr18 | NT_010988 | AC024301 | 42491484 | 3 | 35808 | 0 | 0 | 35808 |
| S/G/Y/R/B/O |
NT_010988 | AC020722 | 42679961 | 1 | chr18 | NT_010988 | AC103676 | 42810149 | 3 | 20784 | 0 | 0 | 20784 |
| S/G/Y/R/B/O |
NT_010988 | AC020722 | 42679961 | 1 |   |   | AC091555 | 42491484 | 3 | 21455 | 0 | 0 | 21455 |
| S/G/Y/R/B/O |
NT_010988 | AC020722 | 42679961 | 1 |   |   | AP001489 | 42670615 | 1 | 11436 | 0 | 0 | 11436 |
| S/G/Y/R/B/O |
NT_010988 | AC046181 | 42785849 | 3 | chr18 | NT_010988 | AC103676 | 42810149 | 3 | 147513 | 0 | 0 | 147513 |
| S/G/Y/R/B/O |
NT_010988 | AC046181 | 42785849 | 3 |   |   | AC091555 | 42670615 | 3 | 34344 | 0 | 0 | 34344 |
| S/G/Y/R/B/O |
NT_010988 | AC046181 | 42785849 | 3 |   |   | AP002753 | 30562128 | 1 | 12341 | 0 | 0 | 12341 |
| S/G/Y/R/B/O |
NT_010988 | AC103676 | 42810149 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010988 | AC103676 | 42810149 | 3 | chr18 | NT_010988 | AC020722 | 42679961 | 1 | 20784 | 0 | 0 | 20784 |
| S/G/Y/R/B/O |
NT_010988 | AC103676 | 42810149 | 3 |   |   | AC091555 | 42785849 | 3 | 86243 | 0 | 0 | 86243 |
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