|
| |
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
| |
| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_030854 | AP001025 | 3237594 | 1 | chr18 | NT_030854 | AC015945 | 3252970 | 1 | 99667 | 1471 | 5047 | 106185 |
| S/G/Y/R/B/O |
NT_030854 | AP001025 | 3237594 | 1 | chr18 | NT_030854 | AC006211 | 3393087 | 3 | 33051 | 2915 | 2360 | 38326 |
| S/G/Y/R/B/O |
NT_030854 | AP001025 | 3237594 | 1 | chr18 | NT_030854 | AC037483 | 3386899 | 1 | 78139 | 8738 | 1033 | 87910 |
| S/G/Y/R/B/O |
NT_030854 | AP001025 | 3237594 | 1 | chr18 | NT_030854 | AP001500 | 3610608 | 1 | 25791 | 3965 | 3231 | 32987 |
| S/G/Y/R/B/O |
NT_030854 | AP001025 | 3237594 | 1 | chr18 | NT_030854 | AP002471 | 3297368 | 1 | 79629 | 2138 | 2610 | 84377 |
| S/G/Y/R/B/O |
NT_030854 | AP001025 | 3237594 | 1 |   |   | AP001495 | 3386899 | 1 | 14061 | 2627 | 3795 | 20483 |
| S/G/Y/R/B/O |
NT_030854 | AP001025 | 3237594 | 1 |   |   | AP002472 | 3297368 | 1 | 23549 | 4983 | 6024 | 34556 |
| S/G/Y/R/B/O |
NT_030854 | AC015945 | 3252970 | 1 | chr18 | NT_030854 | AP002471 | 3297368 | 1 | 48845 | 2107 | 9158 | 60110 |
| S/G/Y/R/B/O |
NT_030854 | AC015945 | 3252970 | 1 | chr18 | NT_030854 | AC006211 | 3393087 | 3 | 10908 | 0 | 0 | 10908 |
| S/G/Y/R/B/O |
NT_030854 | AC015945 | 3252970 | 1 | chr18 | NT_030854 | AC037483 | 3386899 | 1 | 60651 | 15152 | 1034 | 76837 |
| S/G/Y/R/B/O |
NT_030854 | AP002471 | 3297368 | 1 | chr18 | NT_030854 | AC037483 | 3386899 | 1 | 15694 | 6870 | 0 | 22564 |
| S/G/Y/R/B/O |
NT_030854 | AP002471 | 3297368 | 1 | chr18 | NT_030854 | AP001025 | 3237594 | 1 | 79629 | 2138 | 2610 | 84377 |
| S/G/Y/R/B/O |
NT_030854 | AC037483 | 3386899 | 1 | chr18 | NT_030854 | AC006211 | 3393087 | 3 | 39262 | 4483 | 4660 | 48405 |
| S/G/Y/R/B/O |
NT_030854 | AC037483 | 3386899 | 1 | chr18 | NT_030854 | AC015945 | 3252970 | 1 | 60651 | 15152 | 1034 | 76837 |
| S/G/Y/R/B/O |
NT_030854 | AC037483 | 3386899 | 1 | chr18 | NT_030854 | AP001025 | 3237594 | 1 | 78139 | 8738 | 1033 | 87910 |
| S/G/Y/R/B/O |
NT_030854 | AC037483 | 3386899 | 1 | chr18 | NT_030854 | AP001500 | 3610608 | 1 | 33021 | 1382 | 1453 | 35856 |
| S/G/Y/R/B/O |
NT_030854 | AC037483 | 3386899 | 1 |   |   | AP001495 | 3695019 | 1 | 22153 | 7791 | 1196 | 31140 |
| S/G/Y/R/B/O |
NT_030854 | AC037483 | 3386899 | 1 |   |   | AP002472 | 3297368 | 1 | 25101 | 3298 | 7924 | 36323 |
| S/G/Y/R/B/O |
NT_030854 | AC006211 | 3393087 | 3 | chr18 | NT_030854 | AP001500 | 3610608 | 1 | 68930 | 2553 | 7162 | 78645 |
| S/G/Y/R/B/O |
NT_030854 | AC006211 | 3393087 | 3 | chr18 | NT_030854 | AC015945 | 3252970 | 1 | 10908 | 0 | 0 | 10908 |
| S/G/Y/R/B/O |
NT_030854 | AC006211 | 3393087 | 3 | chr18 | NT_030854 | AC021527 | 3704084 | 1 | 55384 | 5069 | 2915 | 63368 |
| S/G/Y/R/B/O |
NT_030854 | AC006211 | 3393087 | 3 | chr18 | NT_030854 | AP001025 | 3237594 | 1 | 33051 | 2915 | 2360 | 38326 |
| S/G/Y/R/B/O |
NT_030854 | AC006211 | 3393087 | 3 | chr18 | NT_030854 | AP001031 | 3695019 | 1 | 71958 | 22012 | 11948 | 105918 |
| S/G/Y/R/B/O |
NT_030854 | AC006211 | 3393087 | 3 | chr18 | NT_030854 | AP002478 | 3705689 | 1 | 25009 | 0 | 8828 | 33837 |
| S/G/Y/R/B/O |
NT_030854 | AC006211 | 3393087 | 3 |   |   | AP001495 | 3695019 | 1 | 55799 | 17329 | 17692 | 90820 |
| S/G/Y/R/B/O |
NT_030854 | AC006211 | 3393087 | 3 |   |   | AP002472 | 3610608 | 1 | 72945 | 5542 | 18087 | 96574 |
| S/G/Y/R/B/O |
NT_030854 | AP001500 | 3610608 | 1 | chr18 | NT_030854 | AP001031 | 3695019 | 1 | 22064 | 8188 | 34057 | 64309 |
| S/G/Y/R/B/O |
NT_030854 | AP001500 | 3610608 | 1 | chr18 | NT_030854 | AC021527 | 3704084 | 1 | 15325 | 0 | 1959 | 17284 |
| S/G/Y/R/B/O |
NT_030854 | AP001500 | 3610608 | 1 | chr18 | NT_030854 | AC037483 | 3386899 | 1 | 33021 | 1382 | 1453 | 35856 |
| S/G/Y/R/B/O |
NT_030854 | AP001500 | 3610608 | 1 | chr18 | NT_030854 | AP001025 | 3237594 | 1 | 25791 | 3965 | 3231 | 32987 |
| S/G/Y/R/B/O |
NT_030854 | AP001500 | 3610608 | 1 |   |   | AP001495 | 3695019 | 1 | 36630 | 5747 | 35961 | 78338 |
| S/G/Y/R/B/O |
NT_030854 | AP001500 | 3610608 | 1 |   |   | AP002472 | 3695019 | 1 | 48482 | 2004 | 25066 | 75552 |
| S/G/Y/R/B/O |
NT_030854 | AP001031 | 3695019 | 1 | chr18 | NT_030854 | AC021527 | 3704084 | 1 | 11186 | 9444 | 1368 | 21998 |
| S/G/Y/R/B/O |
NT_030854 | AP001031 | 3695019 | 1 | chr18 | NT_030854 | AC006211 | 3393087 | 3 | 71958 | 22012 | 11948 | 105918 |
| S/G/Y/R/B/O |
NT_030854 | AP001031 | 3695019 | 1 |   |   | AP001495 | 3386899 | 1 | 34110 | 12314 | 11418 | 57842 |
| S/G/Y/R/B/O |
NT_030854 | AP001031 | 3695019 | 1 |   |   | AP002472 | 3610608 | 1 | 32105 | 6342 | 13414 | 51861 |
| S/G/Y/R/B/O |
NT_030854 | AC021527 | 3704084 | 1 | chr18 | NT_030854 | AP002478 | 3705689 | 1 | 21021 | 17178 | 2156 | 40355 |
| S/G/Y/R/B/O |
NT_030854 | AC021527 | 3704084 | 1 | chr18 | NT_030854 | AC006211 | 3393087 | 3 | 55384 | 5069 | 2915 | 63368 |
| S/G/Y/R/B/O |
NT_030854 | AC021527 | 3704084 | 1 | chr18 | NT_030854 | AC007832 | 3819377 | 1 | 28392 | 5672 | 320 | 34384 |
| S/G/Y/R/B/O |
NT_030854 | AC021527 | 3704084 | 1 | chr18 | NT_030854 | AP001500 | 3610608 | 1 | 15325 | 0 | 1959 | 17284 |
| S/G/Y/R/B/O |
NT_030854 | AC021527 | 3704084 | 1 |   |   | AP001495 | 3695019 | 1 | 17363 | 4807 | 7289 | 29459 |
| S/G/Y/R/B/O |
NT_030854 | AP002478 | 3705689 | 1 | chr18 | NT_030854 | AC015571 | 3715902 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_030854 | AP002478 | 3705689 | 1 | chr18 | NT_030854 | AC006211 | 3393087 | 3 | 25009 | 0 | 8828 | 33837 |
| S/G/Y/R/B/O |
NT_030854 | AP002478 | 3705689 | 1 | chr18 | NT_030854 | AC007832 | 3819377 | 1 | 61205 | 12966 | 21627 | 95798 |
| S/G/Y/R/B/O |
NT_030854 | AP002478 | 3705689 | 1 | chr18 | NT_030854 | AC044911 | 3736637 | 1 | 32313 | 7905 | 1055 | 41273 |
| S/G/Y/R/B/O |
NT_030854 | AC015571 | 3715902 | 1 | chr18 | NT_030854 | AC044911 | 3736637 | 1 | 12870 | 6625 | 1485 | 20980 |
| S/G/Y/R/B/O |
NT_030854 | AC044911 | 3736637 | 1 | chr18 | NT_030854 | AC007832 | 3819377 | 1 | 94973 | 7416 | 2353 | 104742 |
| S/G/Y/R/B/O |
NT_030854 | AC044911 | 3736637 | 1 | chr18 | NT_030854 | AP002478 | 3705689 | 1 | 32313 | 7905 | 1055 | 41273 |
| S/G/Y/R/B/O |
NT_030854 | AC007832 | 3819377 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_030854 | AC007832 | 3819377 | 1 | chr18 | NT_030854 | AC021527 | 3704084 | 1 | 28392 | 5672 | 320 | 34384 |
| S/G/Y/R/B/O |
NT_030854 | AC007832 | 3819377 | 1 | chr18 | NT_030854 | AP002478 | 3705689 | 1 | 61205 | 12966 | 21627 | 95798 |
| |
|
|
|