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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033910 | AC040896 | 67940966 | 1 | chr18 | NT_033910 | AP001647 | 67954993 | 1 | 188367 | 0 | 6908 | 195275 |
| S/G/Y/R/B/O |
NT_033910 | AC040896 | 67940966 | 1 | chr18 | NT_033910 | AC022035 | 68597300 | 2 | 67119 | 0 | 0 | 67119 |
| S/G/Y/R/B/O |
NT_033910 | AC040896 | 67940966 | 1 | chr18 | NT_033910 | AC067819 | 68036616 | 1 | 63692 | 0 | 0 | 63692 |
| S/G/Y/R/B/O |
NT_033910 | AC040896 | 67940966 | 1 |   |   | AC013559 | 67217114 | 2 | 67108 | 0 | 0 | 67108 |
| S/G/Y/R/B/O |
NT_033910 | AP001647 | 67954993 | 1 | chr18 | NT_033910 | AC067819 | 68036616 | 1 | 29532 | 0 | 6879 | 36411 |
| S/G/Y/R/B/O |
NT_033910 | AP001647 | 67954993 | 1 | chr18 | NT_033910 | AC022035 | 68597300 | 2 | 28474 | 0 | 0 | 28474 |
| S/G/Y/R/B/O |
NT_033910 | AP001647 | 67954993 | 1 |   |   | AC013559 | 67954993 | 2 | 28412 | 0 | 0 | 28412 |
| S/G/Y/R/B/O |
NT_033910 | AC067819 | 68036616 | 1 | chr18 | NT_033910 | AC005909 | 68106494 | 3 | 81302 | 0 | 0 | 81302 |
| S/G/Y/R/B/O |
NT_033910 | AC067819 | 68036616 | 1 | chr18 | NT_033910 | AC040896 | 67940966 | 1 | 63692 | 0 | 0 | 63692 |
| S/G/Y/R/B/O |
NT_033910 | AC067819 | 68036616 | 1 |   |   | AP001570 | 67940966 | 1 | 104697 | 0 | 0 | 104697 |
| S/G/Y/R/B/O |
NT_033910 | AC067819 | 68036616 | 1 |   |   | AP002425 | 67954993 | 1 | 64057 | 2041 | 15342 | 81440 |
| S/G/Y/R/B/O |
NT_033910 | AC005909 | 68106494 | 3 | chr18 | NT_033910 | AC022968 | 68217840 | 3 | 26189 | 0 | 0 | 26189 |
| S/G/Y/R/B/O |
NT_033910 | AC005909 | 68106494 | 3 |   |   | AP001570 | 68036616 | 1 | 120690 | 0 | 0 | 120690 |
| S/G/Y/R/B/O |
NT_033910 | AC005909 | 68106494 | 3 |   |   | AP002425 | 68036616 | 1 | 115839 | 2039 | 0 | 117878 |
| S/G/Y/R/B/O |
NT_033910 | AC022968 | 68217840 | 3 | chr18 | NT_033910 | AC068112 | 68384989 | 3 | 20102 | 0 | 0 | 20102 |
| S/G/Y/R/B/O |
NT_033910 | AC022968 | 68217840 | 3 | chr18 | NT_033910 | AP002396 | 68552071 | 1 | 118016 | 10053 | 8656 | 136725 |
| S/G/Y/R/B/O |
NT_033910 | AC022968 | 68217840 | 3 |   |   | AP001587 | 68384989 | 1 | 133361 | 4674 | 1784 | 139819 |
| S/G/Y/R/B/O |
NT_033910 | AC068112 | 68384989 | 3 | chr18 | NT_033910 | AC021509 | 68550929 | 1 | 113264 | 0 | 0 | 113264 |
| S/G/Y/R/B/O |
NT_033910 | AC068112 | 68384989 | 3 | chr18 | NT_033910 | AP002396 | 68552071 | 1 | 66618 | 2681 | 0 | 69299 |
| S/G/Y/R/B/O |
NT_033910 | AC068112 | 68384989 | 3 |   |   | AP001587 | 68217840 | 1 | 37595 | 7146 | 0 | 44741 |
| S/G/Y/R/B/O |
NT_033910 | AC021509 | 68550929 | 1 | chr18 | NT_033910 | AP002396 | 68552071 | 1 | 100053 | 4308 | 1462 | 105823 |
| S/G/Y/R/B/O |
NT_033910 | AC021509 | 68550929 | 1 |   |   | AP001587 | 68384989 | 1 | 47549 | 7145 | 0 | 54694 |
| S/G/Y/R/B/O |
NT_033910 | AP002396 | 68552071 | 1 | chr18 | NT_033910 | AC022035 | 68597300 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033910 | AP002396 | 68552071 | 1 | chr18 | NT_033910 | AC022968 | 68217840 | 3 | 118016 | 10053 | 8656 | 136725 |
| S/G/Y/R/B/O |
NT_033910 | AP002396 | 68552071 | 1 | chr18 | NT_033910 | AC068112 | 68384989 | 3 | 66618 | 2681 | 0 | 69299 |
| S/G/Y/R/B/O |
NT_033910 | AP002396 | 68552071 | 1 |   |   | AP001587 | 68384989 | 1 | 118774 | 12533 | 11177 | 142484 |
| S/G/Y/R/B/O |
NT_033910 | AC022035 | 68597300 | 2 | chr18 | NT_033910 | AC096708 | 68772724 | 2 | 8494 | 0 | 0 | 8494 |
| S/G/Y/R/B/O |
NT_033910 | AC022035 | 68597300 | 2 | chr18 | NT_033910 | AC040896 | 67940966 | 1 | 67119 | 0 | 0 | 67119 |
| S/G/Y/R/B/O |
NT_033910 | AC022035 | 68597300 | 2 | chr18 | NT_033910 | AP001647 | 67954993 | 1 | 28474 | 0 | 0 | 28474 |
| S/G/Y/R/B/O |
NT_033910 | AC022035 | 68597300 | 2 |   |   | AC013559 | 68384989 | 2 | 175215 | 0 | 0 | 175215 |
| S/G/Y/R/B/O |
NT_033910 | AC022035 | 68597300 | 2 |   |   | AP001402 | 68772724 | 1 | 66837 | 3816 | 35938 | 106591 |
| S/G/Y/R/B/O |
NT_033910 | AC096708 | 68772724 | 2 | chr18 | NT_033910 | AC011087 | 68944026 | 1 | 37482 | 0 | 0 | 37482 |
| S/G/Y/R/B/O |
NT_033910 | AC096708 | 68772724 | 2 | chr18 | NT_033910 | AP002421 | 69058021 | 1 | 134928 | 20503 | 8317 | 163748 |
| S/G/Y/R/B/O |
NT_033910 | AC096708 | 68772724 | 2 |   |   | AP001402 | 68597300 | 1 | 63708 | 0 | 16896 | 80604 |
| S/G/Y/R/B/O |
NT_033910 | AC011087 | 68944026 | 1 | chr18 | NT_033910 | AP002421 | 69058021 | 1 | 24407 | 3896 | 0 | 28303 |
| S/G/Y/R/B/O |
NT_033910 | AP002421 | 69058021 | 1 | chr18 | NT_033910 | AC090337 | 69062888 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033910 | AP002421 | 69058021 | 1 | chr18 | NT_033910 | AC096708 | 68772724 | 2 | 134928 | 20503 | 8317 | 163748 |
| S/G/Y/R/B/O |
NT_033910 | AP002421 | 69058021 | 1 |   |   | AP001402 | 42823615 | 1 | 42677 | 16141 | 7917 | 66735 |
| S/G/Y/R/B/O |
NT_033910 | AC090337 | 69062888 | 3 | chr18 | NT_033910 | AC026585 | 69217795 | 3 | 28879 | 0 | 0 | 28879 |
| S/G/Y/R/B/O |
NT_033910 | AC090337 | 69062888 | 3 |   |   | AC032026 | 69217795 | 2 | 141254 | 0 | 0 | 141254 |
| S/G/Y/R/B/O |
NT_033910 | AC090337 | 69062888 | 3 |   |   | AP001556 | 69217795 | 1 | 183707 | 0 | 0 | 183707 |
| S/G/Y/R/B/O |
NT_033910 | AC026585 | 69217795 | 3 | chr18 | NT_033910 | AC015673 | 69379020 | 1 | 55031 | 0 | 0 | 55031 |
| S/G/Y/R/B/O |
NT_033910 | AC026585 | 69217795 | 3 |   |   | AC032026 | 69379020 | 2 | 47122 | 0 | 0 | 47122 |
| S/G/Y/R/B/O |
NT_033910 | AC015673 | 69379020 | 1 | chr18 | NT_033910 | AC068254 | 69442092 | 3 | 54584 | 0 | 0 | 54584 |
| S/G/Y/R/B/O |
NT_033910 | AC068254 | 69442092 | 3 | chr18 | NT_033910 | AC090231 | 69661352 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033910 | AC068254 | 69442092 | 3 |   |   | AC022711 | 69379020 | 1 | 100922 | 0 | 0 | 100922 |
| S/G/Y/R/B/O |
NT_033910 | AC090231 | 69661352 | 3 | chr18 | NT_033910 | AC090359 | 69829746 | 3 | 70088 | 0 | 0 | 70088 |
| S/G/Y/R/B/O |
NT_033910 | AC090231 | 69661352 | 3 | chr18 | NT_033910 | AP001566 | 70280730 | 1 | 48209 | 2749 | 0 | 50958 |
| S/G/Y/R/B/O |
NT_033910 | AC090231 | 69661352 | 3 |   |   | AC012148 | 69379020 | 3 | 167618 | 0 | 0 | 167618 |
| S/G/Y/R/B/O |
NT_033910 | AC090231 | 69661352 | 3 |   |   | AC022711 | 69379020 | 1 | 43317 | 0 | 0 | 43317 |
| S/G/Y/R/B/O |
NT_033910 | AC090231 | 69661352 | 3 |   |   | AC091137 | 69829746 | 2 | 48880 | 0 | 0 | 48880 |
| S/G/Y/R/B/O |
NT_033910 | AC090231 | 69661352 | 3 |   |   | AP001585 | 70280730 | 1 | 26655 | 0 | 0 | 26655 |
| S/G/Y/R/B/O |
NT_033910 | AC090231 | 69661352 | 3 |   |   | AP002416 | 70280730 | 1 | 142917 | 12896 | 1962 | 157775 |
| S/G/Y/R/B/O |
NT_033910 | AC090231 | 69661352 | 3 |   |   | AP002445 | 70280730 | 1 | 97192 | 3500 | 4059 | 104751 |
| S/G/Y/R/B/O |
NT_033910 | AC090359 | 69829746 | 3 | chr18 | NT_033910 | AC011930 | 69879907 | 3 | 100712 | 0 | 0 | 100712 |
| S/G/Y/R/B/O |
NT_033910 | AC090359 | 69829746 | 3 | chr18 | NT_033910 | AP001566 | 70280730 | 1 | 203047 | 0 | 5321 | 208368 |
| S/G/Y/R/B/O |
NT_033910 | AC090359 | 69829746 | 3 |   |   | AC019021 | 69879907 | 1 | 92441 | 0 | 0 | 92441 |
| S/G/Y/R/B/O |
NT_033910 | AC090359 | 69829746 | 3 |   |   | AC090217 | 69879907 | 1 | 128013 | 0 | 0 | 128013 |
| S/G/Y/R/B/O |
NT_033910 | AC090359 | 69829746 | 3 |   |   | AC091137 | 69661352 | 2 | 167958 | 0 | 0 | 167958 |
| S/G/Y/R/B/O |
NT_033910 | AC090359 | 69829746 | 3 |   |   | AC091574 | 69661352 | 1 | 23069 | 1506 | 0 | 24575 |
| S/G/Y/R/B/O |
NT_033910 | AC090359 | 69829746 | 3 |   |   | AP001585 | 70280730 | 1 | 97367 | 4794 | 0 | 102161 |
| S/G/Y/R/B/O |
NT_033910 | AC090359 | 69829746 | 3 |   |   | AP002415 | 70280730 | 1 | 108273 | 4750 | 0 | 113023 |
| S/G/Y/R/B/O |
NT_033910 | AC090359 | 69829746 | 3 |   |   | AP002416 | 70280730 | 1 | 58016 | 6228 | 469 | 64713 |
| S/G/Y/R/B/O |
NT_033910 | AC090359 | 69829746 | 3 |   |   | AP002445 | 70280730 | 1 | 77886 | 6245 | 0 | 84131 |
| S/G/Y/R/B/O |
NT_033910 | AC011930 | 69879907 | 3 | chr18 | NT_033910 | AC021701 | 70044075 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033910 | AC011930 | 69879907 | 3 | chr18 | NT_033910 | AP001566 | 70280730 | 1 | 96152 | 0 | 2608 | 98760 |
| S/G/Y/R/B/O |
NT_033910 | AC011930 | 69879907 | 3 |   |   | AC019021 | 70280730 | 1 | 116248 | 0 | 0 | 116248 |
| S/G/Y/R/B/O |
NT_033910 | AC011930 | 69879907 | 3 |   |   | AC090217 | 70280730 | 1 | 56287 | 0 | 0 | 56287 |
| S/G/Y/R/B/O |
NT_033910 | AC011930 | 69879907 | 3 |   |   | AC091137 | 69829746 | 2 | 69140 | 0 | 0 | 69140 |
| S/G/Y/R/B/O |
NT_033910 | AC011930 | 69879907 | 3 |   |   | AC091574 | 69829746 | 1 | 101149 | 0 | 0 | 101149 |
| S/G/Y/R/B/O |
NT_033910 | AC011930 | 69879907 | 3 |   |   | AP001585 | 70280730 | 1 | 64853 | 2145 | 0 | 66998 |
| S/G/Y/R/B/O |
NT_033910 | AC011930 | 69879907 | 3 |   |   | AP002415 | 70280730 | 1 | 107158 | 4053 | 16704 | 127915 |
| S/G/Y/R/B/O |
NT_033910 | AC021701 | 70044075 | 3 | chr18 | NT_033910 | AC023395 | 70182866 | 3 | 62233 | 0 | 0 | 62233 |
| S/G/Y/R/B/O |
NT_033910 | AC023395 | 70182866 | 3 | chr18 | NT_033910 | AP001566 | 70280730 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033910 | AC023395 | 70182866 | 3 | chr18 | NT_033909 | AC013558 | 70331073 | 3 | 53042 | 0 | 0 | 53042 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 | chr18 | NT_033910 | AC011930 | 69879907 | 3 | 96152 | 0 | 2608 | 98760 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 | chr18 | NT_033910 | AC090231 | 69661352 | 3 | 48209 | 2749 | 0 | 50958 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 | chr18 | NT_033910 | AC090359 | 69829746 | 3 | 203047 | 0 | 5321 | 208368 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 |   |   | AC012148 | 69879907 | 3 | 48209 | 2778 | 0 | 50987 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 |   |   | AC019021 | 69879907 | 1 | 48545 | 0 | 2613 | 51158 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 |   |   | AC090217 | 69879907 | 1 | 121669 | 0 | 2613 | 124282 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 |   |   | AC091137 | 69829746 | 2 | 145395 | 2782 | 0 | 148177 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 |   |   | AC091574 | 69829746 | 1 | 48504 | 0 | 2608 | 51112 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 |   |   | AP001585 | 69829746 | 1 | 41543 | 4864 | 0 | 46407 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 |   |   | AP002415 | 69829746 | 1 | 74989 | 2263 | 13150 | 90402 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 |   |   | AP002416 | 69829746 | 1 | 52599 | 6228 | 469 | 59296 |
| S/G/Y/R/B/O |
NT_033910 | AP001566 | 70280730 | 1 |   |   | AP002445 | 69829746 | 1 | 77722 | 6315 | 1356 | 85393 |
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