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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010874 | AC027572 | 47063721 | 1 | chr18 | NT_010874 | AC090329 | 47131607 | 1 | 71659 | 0 | 7153 | 78812 |
| S/G/Y/R/B/O |
NT_010874 | AC027572 | 47063721 | 1 | chr18 | NT_010874 | AC044840 | 47273379 | 1 | 45397 | 0 | 0 | 45397 |
| S/G/Y/R/B/O |
NT_010874 | AC027572 | 47063721 | 1 | chr18 | NT_010874 | AP001567 | 47152226 | 1 | 79499 | 2013 | 8009 | 89521 |
| S/G/Y/R/B/O |
NT_010874 | AC090329 | 47131607 | 1 | chr18 | NT_010874 | AP001567 | 47152226 | 1 | 134140 | 2014 | 11929 | 148083 |
| S/G/Y/R/B/O |
NT_010874 | AC090329 | 47131607 | 1 | chr18 | NT_010874 | AC044840 | 47273379 | 1 | 27050 | 0 | 95573 | 122623 |
| S/G/Y/R/B/O |
NT_010874 | AP001567 | 47152226 | 1 | chr18 | NT_010874 | AC044840 | 47273379 | 1 | 103162 | 2014 | 6641 | 111817 |
| S/G/Y/R/B/O |
NT_010874 | AP001567 | 47152226 | 1 | chr18 | NT_010874 | AC027572 | 47063721 | 1 | 79499 | 2013 | 8009 | 89521 |
| S/G/Y/R/B/O |
NT_010874 | AC044840 | 47273379 | 1 | chr18 | NT_010874 | AC016866 | 47315193 | 3 | 50632 | 0 | 0 | 50632 |
| S/G/Y/R/B/O |
NT_010874 | AC044840 | 47273379 | 1 | chr18 | NT_010874 | AC015669 | 47408916 | 2 | 10280 | 0 | 0 | 10280 |
| S/G/Y/R/B/O |
NT_010874 | AC044840 | 47273379 | 1 | chr18 | NT_010874 | AC027572 | 47063721 | 1 | 45397 | 0 | 0 | 45397 |
| S/G/Y/R/B/O |
NT_010874 | AC044840 | 47273379 | 1 | chr18 | NT_010874 | AC090329 | 47131607 | 1 | 27050 | 0 | 95573 | 122623 |
| S/G/Y/R/B/O |
NT_010874 | AC044840 | 47273379 | 1 | chr18 | NT_010874 | AP001388 | 47518306 | 1 | 31201 | 0 | 1412 | 32613 |
| S/G/Y/R/B/O |
NT_010874 | AC016866 | 47315193 | 3 | chr18 | NT_010874 | AC015669 | 47408916 | 2 | 53460 | 0 | 77279 | 130739 |
| S/G/Y/R/B/O |
NT_010874 | AC016866 | 47315193 | 3 | chr18 | NT_010874 | AP001388 | 47518306 | 1 | 121970 | 9426 | 2780 | 134176 |
| S/G/Y/R/B/O |
NT_010874 | AC016866 | 47315193 | 3 |   |   | AC090364 | 47273379 | 1 | 116056 | 5595 | 2073 | 123724 |
| S/G/Y/R/B/O |
NT_010874 | AC015669 | 47408916 | 2 | chr18 | NT_010874 | AC024384 | 47488460 | 1 | 26249 | 0 | 0 | 26249 |
| S/G/Y/R/B/O |
NT_010874 | AC015669 | 47408916 | 2 | chr18 | NT_010874 | AC044840 | 47273379 | 1 | 10280 | 0 | 0 | 10280 |
| S/G/Y/R/B/O |
NT_010874 | AC015669 | 47408916 | 2 | chr18 | NT_010874 | AP001388 | 47518306 | 1 | 90467 | 9433 | 1366 | 101266 |
| S/G/Y/R/B/O |
NT_010874 | AC015669 | 47408916 | 2 |   |   | AC090364 | 47273379 | 1 | 30100 | 5593 | 21203 | 56896 |
| S/G/Y/R/B/O |
NT_010874 | AC024384 | 47488460 | 1 | chr18 | NT_010874 | AP001388 | 47518306 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010874 | AC024384 | 47488460 | 1 | chr18 | NT_010874 | AC093567 | 48109111 | 1 | 125720 | 0 | 0 | 125720 |
| S/G/Y/R/B/O |
NT_010874 | AP001388 | 47518306 | 1 | chr18 | NT_010874 | AP002403 | 47519482 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010874 | AP001388 | 47518306 | 1 | chr18 | NT_010874 | AC015669 | 47408916 | 2 | 90467 | 9433 | 1366 | 101266 |
| S/G/Y/R/B/O |
NT_010874 | AP001388 | 47518306 | 1 | chr18 | NT_010874 | AC016866 | 47315193 | 3 | 121970 | 9426 | 2780 | 134176 |
| S/G/Y/R/B/O |
NT_010874 | AP001388 | 47518306 | 1 | chr18 | NT_010874 | AC044840 | 47273379 | 1 | 31201 | 0 | 1412 | 32613 |
| S/G/Y/R/B/O |
NT_010874 | AP001388 | 47518306 | 1 |   |   | AC090364 | 47273379 | 1 | 41165 | 1689 | 1168 | 44022 |
| S/G/Y/R/B/O |
NT_010874 | AP002403 | 47519482 | 1 | chr18 | NT_010874 | AP001935 | 47520831 | 1 | 80230 | 6824 | 4517 | 91571 |
| S/G/Y/R/B/O |
NT_010874 | AP002403 | 47519482 | 1 | chr18 | NT_010874 | AC024288 | 47706146 | 3 | 19726 | 0 | 3412 | 23138 |
| S/G/Y/R/B/O |
NT_010874 | AP002403 | 47519482 | 1 | chr18 | NT_010874 | AC091150 | 47521489 | 1 | 150348 | 5138 | 4794 | 160280 |
| S/G/Y/R/B/O |
NT_010874 | AP001935 | 47520831 | 1 | chr18 | NT_010874 | AC091150 | 47521489 | 1 | 129081 | 5131 | 16420 | 150632 |
| S/G/Y/R/B/O |
NT_010874 | AP001935 | 47520831 | 1 | chr18 | NT_010874 | AC024288 | 47706146 | 3 | 42140 | 1639 | 792 | 44571 |
| S/G/Y/R/B/O |
NT_010874 | AC091150 | 47521489 | 1 | chr18 | NT_010874 | AC024288 | 47706146 | 3 | 23885 | 0 | 0 | 23885 |
| S/G/Y/R/B/O |
NT_010874 | AC091150 | 47521489 | 1 | chr18 | NT_010874 | AP002403 | 47519482 | 1 | 150348 | 5138 | 4794 | 160280 |
| S/G/Y/R/B/O |
NT_010874 | AC024288 | 47706146 | 3 | chr18 | NT_010874 | AC048380 | 47796855 | 2 | 54927 | 0 | 0 | 54927 |
| S/G/Y/R/B/O |
NT_010874 | AC024288 | 47706146 | 3 | chr18 | NT_010874 | AP001935 | 47520831 | 1 | 42140 | 1639 | 792 | 44571 |
| S/G/Y/R/B/O |
NT_010874 | AC024288 | 47706146 | 3 | chr18 | NT_010874 | AP002403 | 47519482 | 1 | 19726 | 0 | 3412 | 23138 |
| S/G/Y/R/B/O |
NT_010874 | AC048380 | 47796855 | 2 | chr18 | NT_010874 | AC022919 | 48021265 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010874 | AC022919 | 48021265 | 2 | chr18 | NT_010874 | AC093567 | 48109111 | 1 | 29113 | 0 | 0 | 29113 |
| S/G/Y/R/B/O |
NT_010874 | AC093567 | 48109111 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010874 | AC093567 | 48109111 | 1 | chr18 | NT_010874 | AC024384 | 47488460 | 1 | 125720 | 0 | 0 | 125720 |
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