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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010902 | AC021763 | 44715425 | 1 | chr18 | NT_010902 | AP001379 | 44719073 | 1 | 99676 | 7518 | 35344 | 142538 |
| S/G/Y/R/B/O |
NT_010902 | AC021763 | 44715425 | 1 | chr18 | NT_010902 | AC015959 | 44857603 | 2 | 67242 | 0 | 0 | 67242 |
| S/G/Y/R/B/O |
NT_010902 | AC021763 | 44715425 | 1 |   |   | AP002438 | 44719073 | 1 | 53584 | 3968 | 4136 | 61688 |
| S/G/Y/R/B/O |
NT_010902 | AP001379 | 44719073 | 1 | chr18 | NT_010902 | AP001590 | 44741131 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010902 | AP001379 | 44719073 | 1 | chr18 | NT_010902 | AC015959 | 44857603 | 2 | 55121 | 2387 | 0 | 57508 |
| S/G/Y/R/B/O |
NT_010902 | AP001379 | 44719073 | 1 |   |   | AP002438 | 39207514 | 1 | 42531 | 10918 | 8352 | 61801 |
| S/G/Y/R/B/O |
NT_010902 | AP001590 | 44741131 | 1 | chr18 | NT_010902 | AC018567 | 44748878 | 1 | 10015 | 4686 | 31199 | 45900 |
| S/G/Y/R/B/O |
NT_010902 | AP001590 | 44741131 | 1 | chr18 | NT_010902 | AC018931 | 44934299 | 3 | 43043 | 5803 | 53573 | 102419 |
| S/G/Y/R/B/O |
NT_010902 | AP001590 | 44741131 | 1 | chr18 | NT_010902 | AC021934 | 45256945 | 1 | 46166 | 2715 | 46462 | 95343 |
| S/G/Y/R/B/O |
NT_010902 | AP001590 | 44741131 | 1 | chr18 | NT_010902 | AC064800 | 45129063 | 3 | 22485 | 0 | 40135 | 62620 |
| S/G/Y/R/B/O |
NT_010902 | AP001590 | 44741131 | 1 | chr18 | NT_010902 | AC090311 | 45256952 | 1 | 13895 | 0 | 22639 | 36534 |
| S/G/Y/R/B/O |
NT_010902 | AP001590 | 44741131 | 1 | chr18 | NT_010902 | AC091139 | 45119416 | 1 | 77081 | 8518 | 98916 | 184515 |
| S/G/Y/R/B/O |
NT_010902 | AC018567 | 44748878 | 1 | chr18 | NT_010902 | AC015959 | 44857603 | 2 | 49399 | 0 | 0 | 49399 |
| S/G/Y/R/B/O |
NT_010902 | AC018567 | 44748878 | 1 | chr18 | NT_010902 | AC018931 | 44934299 | 3 | 126487 | 3511 | 954 | 130952 |
| S/G/Y/R/B/O |
NT_010902 | AC018567 | 44748878 | 1 | chr18 | NT_010902 | AC021934 | 45256945 | 1 | 11350 | 0 | 0 | 11350 |
| S/G/Y/R/B/O |
NT_010902 | AC018567 | 44748878 | 1 | chr18 | NT_010902 | AC091139 | 45119416 | 1 | 89094 | 3511 | 605 | 93210 |
| S/G/Y/R/B/O |
NT_010902 | AC015959 | 44857603 | 2 | chr18 | NT_010902 | AC018931 | 44934299 | 3 | 57189 | 0 | 0 | 57189 |
| S/G/Y/R/B/O |
NT_010902 | AC015959 | 44857603 | 2 | chr18 | NT_010902 | AC021763 | 44715425 | 1 | 67242 | 0 | 0 | 67242 |
| S/G/Y/R/B/O |
NT_010902 | AC015959 | 44857603 | 2 | chr18 | NT_010902 | AP001379 | 44719073 | 1 | 55121 | 2387 | 0 | 57508 |
| S/G/Y/R/B/O |
NT_010902 | AC015959 | 44857603 | 2 |   |   | AP002438 | 44719073 | 1 | 120645 | 19233 | 8713 | 148591 |
| S/G/Y/R/B/O |
NT_010902 | AC018931 | 44934299 | 3 | chr18 | NT_010902 | AC091139 | 45119416 | 1 | 123474 | 0 | 0 | 123474 |
| S/G/Y/R/B/O |
NT_010902 | AC018931 | 44934299 | 3 | chr18 | NT_010902 | AC018567 | 44748878 | 1 | 126487 | 3511 | 954 | 130952 |
| S/G/Y/R/B/O |
NT_010902 | AC018931 | 44934299 | 3 | chr18 | NT_010902 | AC021934 | 45256945 | 1 | 36468 | 0 | 0 | 36468 |
| S/G/Y/R/B/O |
NT_010902 | AC018931 | 44934299 | 3 | chr18 | NT_010902 | AP001590 | 44741131 | 1 | 43043 | 5803 | 53573 | 102419 |
| S/G/Y/R/B/O |
NT_010902 | AC018931 | 44934299 | 3 |   |   | AP002438 | 44741131 | 1 | 43641 | 0 | 1624 | 45265 |
| S/G/Y/R/B/O |
NT_010902 | AC091139 | 45119416 | 1 | chr18 | NT_010902 | AC064800 | 45129063 | 3 | 82627 | 0 | 0 | 82627 |
| S/G/Y/R/B/O |
NT_010902 | AC091139 | 45119416 | 1 | chr18 | NT_010902 | AC018567 | 44748878 | 1 | 89094 | 3511 | 605 | 93210 |
| S/G/Y/R/B/O |
NT_010902 | AC091139 | 45119416 | 1 | chr18 | NT_010902 | AC021934 | 45256945 | 1 | 99750 | 2536 | 0 | 102286 |
| S/G/Y/R/B/O |
NT_010902 | AC091139 | 45119416 | 1 | chr18 | NT_010902 | AP001590 | 44741131 | 1 | 77081 | 8518 | 98916 | 184515 |
| S/G/Y/R/B/O |
NT_010902 | AC091139 | 45119416 | 1 |   |   | AC090412 | 45129063 | 1 | 22363 | 2178 | 18222 | 42763 |
| S/G/Y/R/B/O |
NT_010902 | AC091139 | 45119416 | 1 |   |   | AP001354 | 45129063 | 1 | 25223 | 0 | 0 | 25223 |
| S/G/Y/R/B/O |
NT_010902 | AC064800 | 45129063 | 3 | chr18 | NT_010902 | AC021934 | 45256945 | 1 | 102385 | 0 | 0 | 102385 |
| S/G/Y/R/B/O |
NT_010902 | AC064800 | 45129063 | 3 | chr18 | NT_010902 | AC090311 | 45256952 | 1 | 98528 | 0 | 0 | 98528 |
| S/G/Y/R/B/O |
NT_010902 | AC064800 | 45129063 | 3 | chr18 | NT_010902 | AP001590 | 44741131 | 1 | 22485 | 0 | 40135 | 62620 |
| S/G/Y/R/B/O |
NT_010902 | AC064800 | 45129063 | 3 |   |   | AC090412 | 45256952 | 1 | 34915 | 4624 | 0 | 39539 |
| S/G/Y/R/B/O |
NT_010902 | AC064800 | 45129063 | 3 |   |   | AP001354 | 45119416 | 1 | 87677 | 2625 | 0 | 90302 |
| S/G/Y/R/B/O |
NT_010902 | AC021934 | 45256945 | 1 | chr18 | NT_010902 | AC090311 | 45256952 | 1 | 84042 | 0 | 0 | 84042 |
| S/G/Y/R/B/O |
NT_010902 | AC021934 | 45256945 | 1 | chr18 | NT_010902 | AC018567 | 44748878 | 1 | 11350 | 0 | 0 | 11350 |
| S/G/Y/R/B/O |
NT_010902 | AC021934 | 45256945 | 1 | chr18 | NT_010902 | AC018931 | 44934299 | 3 | 36468 | 0 | 0 | 36468 |
| S/G/Y/R/B/O |
NT_010902 | AC021934 | 45256945 | 1 | chr18 | NT_010902 | AC091139 | 45119416 | 1 | 99750 | 2536 | 0 | 102286 |
| S/G/Y/R/B/O |
NT_010902 | AC021934 | 45256945 | 1 | chr18 | NT_010902 | AP001590 | 44741131 | 1 | 46166 | 2715 | 46462 | 95343 |
| S/G/Y/R/B/O |
NT_010902 | AC021934 | 45256945 | 1 |   |   | AC090412 | 45256952 | 1 | 16274 | 4412 | 18203 | 38889 |
| S/G/Y/R/B/O |
NT_010902 | AC021934 | 45256945 | 1 |   |   | AP001354 | 45119416 | 1 | 32764 | 0 | 0 | 32764 |
| S/G/Y/R/B/O |
NT_010902 | AC090311 | 45256952 | 1 | chr18 | NT_010902 | AC090216 | 45272331 | 1 | 46641 | 0 | 3300 | 49941 |
| S/G/Y/R/B/O |
NT_010902 | AC090311 | 45256952 | 1 | chr18 | NT_010902 | AC064800 | 45129063 | 3 | 98528 | 0 | 0 | 98528 |
| S/G/Y/R/B/O |
NT_010902 | AC090311 | 45256952 | 1 | chr18 | NT_010902 | AP001590 | 44741131 | 1 | 13895 | 0 | 22639 | 36534 |
| S/G/Y/R/B/O |
NT_010902 | AC090311 | 45256952 | 1 | chr18 | NT_010902 | AP001813 | 45542762 | 1 | 36838 | 0 | 0 | 36838 |
| S/G/Y/R/B/O |
NT_010902 | AC090311 | 45256952 | 1 |   |   | AC090412 | 45327392 | 1 | 104434 | 6651 | 29035 | 140120 |
| S/G/Y/R/B/O |
NT_010902 | AC090311 | 45256952 | 1 |   |   | AP001354 | 45327392 | 1 | 117300 | 6885 | 9837 | 134022 |
| S/G/Y/R/B/O |
NT_010902 | AC090216 | 45272331 | 1 | chr18 | NT_010902 | AC090241 | 45327392 | 2 | 131535 | 0 | 0 | 131535 |
| S/G/Y/R/B/O |
NT_010902 | AC090216 | 45272331 | 1 | chr18 | NT_010902 | AP001395 | 45425362 | 1 | 44274 | 0 | 0 | 44274 |
| S/G/Y/R/B/O |
NT_010902 | AC090216 | 45272331 | 1 | chr18 | NT_010902 | AP001813 | 45542762 | 1 | 135654 | 0 | 1144 | 136798 |
| S/G/Y/R/B/O |
NT_010902 | AC090216 | 45272331 | 1 | chr18 | NT_010902 | AP002391 | 45514753 | 1 | 100985 | 9361 | 2491 | 112837 |
| S/G/Y/R/B/O |
NT_010902 | AC090216 | 45272331 | 1 |   |   | AC090412 | 45256952 | 1 | 10482 | 2238 | 3950 | 16670 |
| S/G/Y/R/B/O |
NT_010902 | AC090216 | 45272331 | 1 |   |   | AP001354 | 45256952 | 1 | 59895 | 1687 | 0 | 61582 |
| S/G/Y/R/B/O |
NT_010902 | AC090241 | 45327392 | 2 | chr18 | NT_010902 | AP001395 | 45425362 | 1 | 78933 | 0 | 0 | 78933 |
| S/G/Y/R/B/O |
NT_010902 | AC090241 | 45327392 | 2 | chr18 | NT_010902 | AP001813 | 45542762 | 1 | 106319 | 0 | 2067 | 108386 |
| S/G/Y/R/B/O |
NT_010902 | AC090241 | 45327392 | 2 | chr18 | NT_010902 | AP002391 | 45514753 | 1 | 115399 | 15046 | 4380 | 134825 |
| S/G/Y/R/B/O |
NT_010902 | AC090241 | 45327392 | 2 |   |   | AC090412 | 45256952 | 1 | 36326 | 2780 | 893 | 39999 |
| S/G/Y/R/B/O |
NT_010902 | AC090241 | 45327392 | 2 |   |   | AP001354 | 45256952 | 1 | 30816 | 0 | 1377 | 32193 |
| S/G/Y/R/B/O |
NT_010902 | AP001395 | 45425362 | 1 | chr18 | NT_010902 | AP002391 | 45514753 | 1 | 51370 | 4981 | 2998 | 59349 |
| S/G/Y/R/B/O |
NT_010902 | AP001395 | 45425362 | 1 | chr18 | NT_010902 | AC090216 | 45272331 | 1 | 44274 | 0 | 0 | 44274 |
| S/G/Y/R/B/O |
NT_010902 | AP001395 | 45425362 | 1 | chr18 | NT_010902 | AP001813 | 45542762 | 1 | 31643 | 0 | 3319 | 34962 |
| S/G/Y/R/B/O |
NT_010902 | AP002391 | 45514753 | 1 | chr18 | NT_010902 | AP001813 | 45542762 | 1 | 72191 | 6967 | 5581 | 84739 |
| S/G/Y/R/B/O |
NT_010902 | AP002391 | 45514753 | 1 | chr18 | NT_010902 | AC090216 | 45272331 | 1 | 100985 | 9361 | 2491 | 112837 |
| S/G/Y/R/B/O |
NT_010902 | AP002391 | 45514753 | 1 | chr18 | NT_010902 | AC090241 | 45327392 | 2 | 115399 | 15046 | 4380 | 134825 |
| S/G/Y/R/B/O |
NT_010902 | AP002391 | 45514753 | 1 |   |   | AP001354 | 45256952 | 1 | 12880 | 2585 | 2721 | 18186 |
| S/G/Y/R/B/O |
NT_010902 | AP001813 | 45542762 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010902 | AP001813 | 45542762 | 1 | chr18 | NT_010902 | AC090216 | 45272331 | 1 | 135654 | 0 | 1144 | 136798 |
| S/G/Y/R/B/O |
NT_010902 | AP001813 | 45542762 | 1 | chr18 | NT_010902 | AC090241 | 45327392 | 2 | 106319 | 0 | 2067 | 108386 |
| S/G/Y/R/B/O |
NT_010902 | AP001813 | 45542762 | 1 | chr18 | NT_010902 | AC090311 | 45256952 | 1 | 36838 | 0 | 0 | 36838 |
| S/G/Y/R/B/O |
NT_010902 | AP001813 | 45542762 | 1 | chr18 | NT_010902 | AP001395 | 45425362 | 1 | 31643 | 0 | 3319 | 34962 |
| S/G/Y/R/B/O |
NT_010902 | AP001813 | 45542762 | 1 |   |   | AC090412 | 45256952 | 1 | 14542 | 2238 | 4996 | 21776 |
| S/G/Y/R/B/O |
NT_010902 | AP001813 | 45542762 | 1 |   |   | AP001354 | 45256952 | 1 | 37980 | 1495 | 0 | 39475 |
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