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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_028380 | AC021766 | 43093272 | 3 | chr18 | NT_028380 | AC015954 | 43244830 | 2 | 42764 | 0 | 0 | 42764 |
| S/G/Y/R/B/O |
NT_028380 | AC021766 | 43093272 | 3 |   |   | AP002753 | 43244830 | 1 | 68565 | 7574 | 8642 | 84781 |
| S/G/Y/R/B/O |
NT_028380 | AC015954 | 43244830 | 2 | chr18 | NT_028380 | AC105074 | 43342410 | 2 | 0 | 0 | 97085 | 97085 |
| S/G/Y/R/B/O |
NT_028380 | AC015954 | 43244830 | 2 | chr18 | NT_028380 | AP001898 | 43438386 | 1 | 94673 | 1853 | 0 | 96526 |
| S/G/Y/R/B/O |
NT_028380 | AC015954 | 43244830 | 2 |   |   | AP002753 | 43438386 | 1 | 14927 | 0 | 0 | 14927 |
| S/G/Y/R/B/O |
NT_028380 | AC105074 | 43342410 | 2 | chr18 | NT_028380 | AP001898 | 43438386 | 1 | 155915 | 2686 | 1323 | 159924 |
| S/G/Y/R/B/O |
NT_028380 | AP001898 | 43438386 | 1 | chr18 | NT_028380 | AC090376 | 43461190 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028380 | AP001898 | 43438386 | 1 | chr18 | NT_028380 | AC015954 | 43244830 | 2 | 94673 | 1853 | 0 | 96526 |
| S/G/Y/R/B/O |
NT_028380 | AC090376 | 43461190 | 2 | chr18 | NT_028380 | AC018626 | 43472751 | 2 | 193331 | 0 | 0 | 193331 |
| S/G/Y/R/B/O |
NT_028380 | AC090376 | 43461190 | 2 |   |   | AC018621 | 43342410 | 1 | 137780 | 9511 | 15851 | 163142 |
| S/G/Y/R/B/O |
NT_028380 | AC090376 | 43461190 | 2 |   |   | AP001497 | 43472751 | 1 | 111174 | 0 | 16678 | 127852 |
| S/G/Y/R/B/O |
NT_028380 | AC018626 | 43472751 | 2 | chr18 | NT_028380 | AC021810 | 43634925 | 2 | 37970 | 0 | 0 | 37970 |
| S/G/Y/R/B/O |
NT_028380 | AC018626 | 43472751 | 2 |   |   | AC018621 | 43472751 | 1 | 162079 | 9511 | 23761 | 195351 |
| S/G/Y/R/B/O |
NT_028380 | AC018626 | 43472751 | 2 |   |   | AP001497 | 43461190 | 1 | 120203 | 0 | 38828 | 159031 |
| S/G/Y/R/B/O |
NT_028380 | AC021810 | 43634925 | 2 | chr18 | NT_028380 | AC021517 | 43827025 | 2 | 14862 | 0 | 0 | 14862 |
| S/G/Y/R/B/O |
NT_028380 | AC021810 | 43634925 | 2 |   |   | AC018621 | 43461190 | 1 | 23860 | 0 | 0 | 23860 |
| S/G/Y/R/B/O |
NT_028380 | AC021810 | 43634925 | 2 |   |   | AP001497 | 43827025 | 1 | 24297 | 0 | 0 | 24297 |
| S/G/Y/R/B/O |
NT_028380 | AC021517 | 43827025 | 2 | chr18 | NT_028380 | AC091151 | 43973047 | 2 | 0 | 0 | 84809 | 84809 |
| S/G/Y/R/B/O |
NT_028380 | AC021517 | 43827025 | 2 | chr18 | NT_028380 | AP002473 | 44041080 | 1 | 65783 | 2720 | 0 | 68503 |
| S/G/Y/R/B/O |
NT_028380 | AC021517 | 43827025 | 2 |   |   | AC007989 | 43827025 | 1 | 142937 | 0 | 0 | 142937 |
| S/G/Y/R/B/O |
NT_028380 | AC021517 | 43827025 | 2 |   |   | AC079204 | 43634925 | 1 | 17469 | 11371 | 5606 | 34446 |
| S/G/Y/R/B/O |
NT_028380 | AC091151 | 43973047 | 2 | chr18 | NT_028380 | AP002473 | 44041080 | 1 | 36496 | 5885 | 105176 | 147557 |
| S/G/Y/R/B/O |
NT_028380 | AC091151 | 43973047 | 2 |   |   | AC079204 | 44041503 | 1 | 13104 | 4788 | 75080 | 92972 |
| S/G/Y/R/B/O |
NT_028380 | AP002473 | 44041080 | 1 | chr18 | NT_028380 | AC023421 | 44041503 | 1 | 12456 | 2600 | 0 | 15056 |
| S/G/Y/R/B/O |
NT_028380 | AP002473 | 44041080 | 1 | chr18 | NT_028380 | AC021517 | 43827025 | 2 | 65783 | 2720 | 0 | 68503 |
| S/G/Y/R/B/O |
NT_028380 | AP002473 | 44041080 | 1 |   |   | AC007989 | 44041080 | 1 | 98915 | 7091 | 0 | 106006 |
| S/G/Y/R/B/O |
NT_028380 | AP002473 | 44041080 | 1 |   |   | AC079204 | 44041503 | 1 | 31322 | 20895 | 13354 | 65571 |
| S/G/Y/R/B/O |
NT_028380 | AC023421 | 44041503 | 1 | chr18 | NT_028380 | AP001907 | 44155334 | 1 | 83450 | 0 | 0 | 83450 |
| S/G/Y/R/B/O |
NT_028380 | AC023421 | 44041503 | 1 | chr18 | NT_028380 | AC090759 | 44155522 | 1 | 49545 | 0 | 49382 | 98927 |
| S/G/Y/R/B/O |
NT_028380 | AC023421 | 44041503 | 1 |   |   | AC087685 | 43973047 | 2 | 25762 | 0 | 0 | 25762 |
| S/G/Y/R/B/O |
NT_028380 | AC023421 | 44041503 | 1 |   |   | AP002384 | 44155334 | 1 | 24088 | 0 | 0 | 24088 |
| S/G/Y/R/B/O |
NT_028380 | AP001907 | 44155334 | 1 | chr18 | NT_028380 | AC090759 | 44155522 | 1 | 100399 | 7896 | 9559 | 117854 |
| S/G/Y/R/B/O |
NT_028380 | AP001907 | 44155334 | 1 | chr18 | NT_028380 | AC013659 | 44272655 | 1 | 16076 | 2553 | 0 | 18629 |
| S/G/Y/R/B/O |
NT_028380 | AP001907 | 44155334 | 1 | chr18 | NT_028380 | AC090355 | 44324010 | 1 | 14141 | 2553 | 0 | 16694 |
| S/G/Y/R/B/O |
NT_028380 | AP001907 | 44155334 | 1 | chr18 | NT_028380 | AP001563 | 44322689 | 1 | 20542 | 2553 | 7223 | 30318 |
| S/G/Y/R/B/O |
NT_028380 | AP001907 | 44155334 | 1 |   |   | AC087685 | 44041503 | 2 | 52924 | 2421 | 18974 | 74319 |
| S/G/Y/R/B/O |
NT_028380 | AP001907 | 44155334 | 1 |   |   | AP002384 | 44322689 | 1 | 85322 | 4457 | 4041 | 93820 |
| S/G/Y/R/B/O |
NT_028380 | AC090759 | 44155522 | 1 | chr18 | NT_028380 | AC013659 | 44272655 | 1 | 34854 | 0 | 2334 | 37188 |
| S/G/Y/R/B/O |
NT_028380 | AC090759 | 44155522 | 1 | chr18 | NT_028380 | AC023421 | 44041503 | 1 | 49545 | 0 | 49382 | 98927 |
| S/G/Y/R/B/O |
NT_028380 | AC090759 | 44155522 | 1 | chr18 | NT_028380 | AC090355 | 44324010 | 1 | 19122 | 0 | 0 | 19122 |
| S/G/Y/R/B/O |
NT_028380 | AC090759 | 44155522 | 1 | chr18 | NT_028380 | AP001563 | 44322689 | 1 | 19021 | 0 | 0 | 19021 |
| S/G/Y/R/B/O |
NT_028380 | AC090759 | 44155522 | 1 |   |   | AC087685 | 44041503 | 2 | 93468 | 0 | 18183 | 111651 |
| S/G/Y/R/B/O |
NT_028380 | AC090759 | 44155522 | 1 |   |   | AP002384 | 44155334 | 1 | 76383 | 2240 | 1148 | 79771 |
| S/G/Y/R/B/O |
NT_028380 | AC013659 | 44272655 | 1 | chr18 | NT_028380 | AP001563 | 44322689 | 1 | 90482 | 0 | 4355 | 94837 |
| S/G/Y/R/B/O |
NT_028380 | AC013659 | 44272655 | 1 | chr18 | NT_028380 | AC090355 | 44324010 | 1 | 92765 | 0 | 2181 | 94946 |
| S/G/Y/R/B/O |
NT_028380 | AC013659 | 44272655 | 1 | chr18 | NT_028380 | AP001907 | 44155334 | 1 | 16076 | 2553 | 0 | 18629 |
| S/G/Y/R/B/O |
NT_028380 | AC013659 | 44272655 | 1 |   |   | AC087685 | 17782229 | 2 | 47253 | 0 | 1444 | 48697 |
| S/G/Y/R/B/O |
NT_028380 | AC013659 | 44272655 | 1 |   |   | AP002384 | 44155334 | 1 | 29557 | 0 | 2508 | 32065 |
| S/G/Y/R/B/O |
NT_028380 | AP001563 | 44322689 | 1 | chr18 | NT_028380 | AC090355 | 44324010 | 1 | 166598 | 0 | 6369 | 172967 |
| S/G/Y/R/B/O |
NT_028380 | AP001563 | 44322689 | 1 | chr18 | NT_028380 | AC012569 | 44448823 | 1 | 36870 | 2637 | 6357 | 45864 |
| S/G/Y/R/B/O |
NT_028380 | AP001563 | 44322689 | 1 | chr18 | NT_028380 | AC087744 | 44445742 | 1 | 15017 | 0 | 1142 | 16159 |
| S/G/Y/R/B/O |
NT_028380 | AP001563 | 44322689 | 1 | chr18 | NT_028380 | AC090759 | 44155522 | 1 | 19021 | 0 | 0 | 19021 |
| S/G/Y/R/B/O |
NT_028380 | AP001563 | 44322689 | 1 | chr18 | NT_028380 | AP001895 | 44532393 | 1 | 17906 | 5561 | 5170 | 28637 |
| S/G/Y/R/B/O |
NT_028380 | AP001563 | 44322689 | 1 | chr18 | NT_028380 | AP001907 | 44155334 | 1 | 20542 | 2553 | 7223 | 30318 |
| S/G/Y/R/B/O |
NT_028380 | AP001563 | 44322689 | 1 |   |   | AC087685 | 44272655 | 2 | 39505 | 0 | 0 | 39505 |
| S/G/Y/R/B/O |
NT_028380 | AP001563 | 44322689 | 1 |   |   | AP002384 | 44155334 | 1 | 49487 | 0 | 3912 | 53399 |
| S/G/Y/R/B/O |
NT_028380 | AC090355 | 44324010 | 1 | chr18 | NT_028380 | AC087744 | 44445742 | 1 | 25218 | 0 | 8900 | 34118 |
| S/G/Y/R/B/O |
NT_028380 | AC090355 | 44324010 | 1 | chr18 | NT_028380 | AC012569 | 44448823 | 1 | 47031 | 0 | 0 | 47031 |
| S/G/Y/R/B/O |
NT_028380 | AC090355 | 44324010 | 1 | chr18 | NT_028380 | AC013659 | 44272655 | 1 | 92765 | 0 | 2181 | 94946 |
| S/G/Y/R/B/O |
NT_028380 | AC090355 | 44324010 | 1 | chr18 | NT_028380 | AC090759 | 44155522 | 1 | 19122 | 0 | 0 | 19122 |
| S/G/Y/R/B/O |
NT_028380 | AC090355 | 44324010 | 1 | chr18 | NT_028380 | AP001895 | 44532393 | 1 | 17911 | 2971 | 5384 | 26266 |
| S/G/Y/R/B/O |
NT_028380 | AC090355 | 44324010 | 1 | chr18 | NT_028380 | AP001907 | 44155334 | 1 | 14141 | 2553 | 0 | 16694 |
| S/G/Y/R/B/O |
NT_028380 | AC090355 | 44324010 | 1 |   |   | AC087685 | 44272655 | 2 | 50052 | 0 | 0 | 50052 |
| S/G/Y/R/B/O |
NT_028380 | AC090355 | 44324010 | 1 |   |   | AP002384 | 44155334 | 1 | 42246 | 0 | 3908 | 46154 |
| S/G/Y/R/B/O |
NT_028380 | AC087744 | 44445742 | 1 | chr18 | NT_028380 | AC012569 | 44448823 | 1 | 125451 | 8812 | 4581 | 138844 |
| S/G/Y/R/B/O |
NT_028380 | AC087744 | 44445742 | 1 | chr18 | NT_028380 | AP001563 | 44322689 | 1 | 15017 | 0 | 1142 | 16159 |
| S/G/Y/R/B/O |
NT_028380 | AC087744 | 44445742 | 1 | chr18 | NT_028380 | AP001895 | 44532393 | 1 | 42200 | 1959 | 7704 | 51863 |
| S/G/Y/R/B/O |
NT_028380 | AC087744 | 44445742 | 1 | chr18 | NT_028380 | AP002479 | 44589700 | 1 | 31632 | 4235 | 4127 | 39994 |
| S/G/Y/R/B/O |
NT_028380 | AC012569 | 44448823 | 1 | chr18 | NT_028380 | AP001895 | 44532393 | 1 | 94680 | 4923 | 9961 | 109564 |
| S/G/Y/R/B/O |
NT_028380 | AC012569 | 44448823 | 1 | chr18 | NT_028380 | AC090355 | 44324010 | 1 | 47031 | 0 | 0 | 47031 |
| S/G/Y/R/B/O |
NT_028380 | AC012569 | 44448823 | 1 | chr18 | NT_028380 | AP001563 | 44322689 | 1 | 36870 | 2637 | 6357 | 45864 |
| S/G/Y/R/B/O |
NT_028380 | AC012569 | 44448823 | 1 | chr18 | NT_028380 | AP002479 | 44589700 | 1 | 69665 | 11337 | 10858 | 91860 |
| S/G/Y/R/B/O |
NT_028380 | AC012569 | 44448823 | 1 |   |   | D28126 | 44589700 | 3 | 12597 | 0 | 0 | 12597 |
| S/G/Y/R/B/O |
NT_028380 | AP001895 | 44532393 | 1 | chr18 | NT_028380 | AP002479 | 44589700 | 1 | 41434 | 4233 | 0 | 45667 |
| S/G/Y/R/B/O |
NT_028380 | AP001895 | 44532393 | 1 | chr18 | NT_028380 | AC087744 | 44445742 | 1 | 42200 | 1959 | 7704 | 51863 |
| S/G/Y/R/B/O |
NT_028380 | AP001895 | 44532393 | 1 | chr18 | NT_028380 | AC090355 | 44324010 | 1 | 17911 | 2971 | 5384 | 26266 |
| S/G/Y/R/B/O |
NT_028380 | AP001895 | 44532393 | 1 | chr18 | NT_028380 | AP001563 | 44322689 | 1 | 17906 | 5561 | 5170 | 28637 |
| S/G/Y/R/B/O |
NT_028380 | AP002479 | 44589700 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_028380 | AP002479 | 44589700 | 1 | chr18 | NT_028380 | AC012569 | 44448823 | 1 | 69665 | 11337 | 10858 | 91860 |
| S/G/Y/R/B/O |
NT_028380 | AP002479 | 44589700 | 1 | chr18 | NT_028380 | AC087744 | 44445742 | 1 | 31632 | 4235 | 4127 | 39994 |
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