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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_025028 | AC105243 | 73444877 | 2 | chr18 | NT_025028 | AP001833 | 73447909 | 1 | 123792 | 1616 | 0 | 125408 |
| S/G/Y/R/B/O |
NT_025028 | AC105243 | 73444877 | 2 | chr18 | NT_033300 | AC079062 | 73321310 | 2 | 18709 | 0 | 0 | 18709 |
| S/G/Y/R/B/O |
NT_025028 | AC105243 | 73444877 | 2 | chr18 | NT_025028 | AC105216 | 73518231 | 3 | 65230 | 0 | 0 | 65230 |
| S/G/Y/R/B/O |
NT_025028 | AP001833 | 73447909 | 1 | chr18 | NT_025028 | AC105216 | 73518231 | 3 | 69640 | 0 | 0 | 69640 |
| S/G/Y/R/B/O |
NT_025028 | AP001833 | 73447909 | 1 | chr18 | NT_033300 | AC079062 | 73321310 | 2 | 25666 | 0 | 0 | 25666 |
| S/G/Y/R/B/O |
NT_025028 | AP001833 | 73447909 | 1 |   |   | AP001530 | 73444877 | 1 | 23024 | 0 | 13369 | 36393 |
| S/G/Y/R/B/O |
NT_025028 | AC105216 | 73518231 | 3 | chr18 | NT_025028 | AC090226 | 73672821 | 2 | 33271 | 0 | 0 | 33271 |
| S/G/Y/R/B/O |
NT_025028 | AC105216 | 73518231 | 3 | chr18 | NT_025028 | AC105243 | 73444877 | 2 | 65230 | 0 | 0 | 65230 |
| S/G/Y/R/B/O |
NT_025028 | AC105216 | 73518231 | 3 |   |   | AP001530 | 73444877 | 1 | 92901 | 0 | 13400 | 106301 |
| S/G/Y/R/B/O |
NT_025028 | AC105216 | 73518231 | 3 |   |   | AP001840 | 73447909 | 1 | 29491 | 0 | 0 | 29491 |
| S/G/Y/R/B/O |
NT_025028 | AC090226 | 73672821 | 2 | chr18 | NT_025028 | AC079070 | 73813151 | 3 | 72251 | 0 | 0 | 72251 |
| S/G/Y/R/B/O |
NT_025028 | AC090226 | 73672821 | 2 |   |   | AP001530 | 73518231 | 1 | 95795 | 0 | 0 | 95795 |
| S/G/Y/R/B/O |
NT_025028 | AC090226 | 73672821 | 2 |   |   | AP001840 | 73518231 | 1 | 113980 | 0 | 0 | 113980 |
| S/G/Y/R/B/O |
NT_025028 | AC079070 | 73813151 | 3 | chr18 | NT_025028 | AC010947 | 73932322 | 3 | 18314 | 0 | 0 | 18314 |
| S/G/Y/R/B/O |
NT_025028 | AC079070 | 73813151 | 3 |   |   | AP001840 | 73672821 | 1 | 41998 | 0 | 20368 | 62366 |
| S/G/Y/R/B/O |
NT_025028 | AC010947 | 73932322 | 3 | chr18 | NT_025028 | AC090125 | 74099463 | 2 | 16225 | 0 | 0 | 16225 |
| S/G/Y/R/B/O |
NT_025028 | AC010947 | 73932322 | 3 |   |   | AC079013 | 73672821 | 1 | 42941 | 10170 | 2966 | 56077 |
| S/G/Y/R/B/O |
NT_025028 | AC090125 | 74099463 | 2 | chr18 | NT_025028 | AP001842 | 74246466 | 1 | 138720 | 0 | 0 | 138720 |
| S/G/Y/R/B/O |
NT_025028 | AC090125 | 74099463 | 2 |   |   | AC079013 | 73932322 | 1 | 106978 | 11010 | 5138 | 123126 |
| S/G/Y/R/B/O |
NT_025028 | AP001842 | 74246466 | 1 | chr18 | NT_025028 | AC084702 | 74289265 | 3 | 57339 | 0 | 0 | 57339 |
| S/G/Y/R/B/O |
NT_025028 | AP001842 | 74246466 | 1 |   |   | AC079013 | 74246466 | 1 | 94727 | 8055 | 3236 | 106018 |
| S/G/Y/R/B/O |
NT_025028 | AC084702 | 74289265 | 3 | chr18 | NT_025028 | AC090398 | 74373738 | 2 | 35609 | 0 | 0 | 35609 |
| S/G/Y/R/B/O |
NT_025028 | AC084702 | 74289265 | 3 |   |   | AP001638 | 74373738 | 1 | 43840 | 2503 | 554 | 46897 |
| S/G/Y/R/B/O |
NT_025028 | AC084702 | 74289265 | 3 |   |   | AP002442 | 74246466 | 1 | 53534 | 5797 | 2861 | 62192 |
| S/G/Y/R/B/O |
NT_025028 | AC090398 | 74373738 | 2 | chr18 | NT_025028 | AC008021 | 74489625 | 1 | 95739 | 0 | 0 | 95739 |
| S/G/Y/R/B/O |
NT_025028 | AC090398 | 74373738 | 2 | chr18 | NT_025028 | AP001850 | 74495509 | 1 | 63706 | 1716 | 0 | 65422 |
| S/G/Y/R/B/O |
NT_025028 | AC090398 | 74373738 | 2 |   |   | AP001405 | 74289265 | 1 | 79072 | 2454 | 1058 | 82584 |
| S/G/Y/R/B/O |
NT_025028 | AC090398 | 74373738 | 2 |   |   | AP001638 | 74289265 | 1 | 148871 | 8693 | 554 | 158118 |
| S/G/Y/R/B/O |
NT_025028 | AC090398 | 74373738 | 2 |   |   | AP002442 | 74495509 | 1 | 86340 | 13724 | 16442 | 116506 |
| S/G/Y/R/B/O |
NT_025028 | AC008021 | 74489625 | 1 | chr18 | NT_025028 | AP001850 | 74495509 | 1 | 153574 | 2589 | 8844 | 165007 |
| S/G/Y/R/B/O |
NT_025028 | AC008021 | 74489625 | 1 |   |   | AP001405 | 128234220 | 1 | 131943 | 10923 | 3534 | 146400 |
| S/G/Y/R/B/O |
NT_025028 | AC008021 | 74489625 | 1 |   |   | AP001638 | 128234220 | 1 | 74952 | 7249 | 0 | 82201 |
| S/G/Y/R/B/O |
NT_025028 | AC008021 | 74489625 | 1 |   |   | AP002442 | 74495509 | 1 | 37676 | 14580 | 13587 | 65843 |
| S/G/Y/R/B/O |
NT_025028 | AP001850 | 74495509 | 1 | chr18 | NT_025028 | AC009704 | 74571330 | 3 | 22697 | 0 | 0 | 22697 |
| S/G/Y/R/B/O |
NT_025028 | AP001850 | 74495509 | 1 | chr18 | NT_025028 | AC090398 | 74373738 | 2 | 63706 | 1716 | 0 | 65422 |
| S/G/Y/R/B/O |
NT_025028 | AP001850 | 74495509 | 1 |   |   | AP001405 | 91852542 | 1 | 147467 | 10954 | 1058 | 159479 |
| S/G/Y/R/B/O |
NT_025028 | AP001850 | 74495509 | 1 |   |   | AP001638 | 91852542 | 1 | 45284 | 6167 | 0 | 51451 |
| S/G/Y/R/B/O |
NT_025028 | AP001850 | 74495509 | 1 |   |   | AP002442 | 91852542 | 1 | 47127 | 14212 | 13584 | 74923 |
| S/G/Y/R/B/O |
NT_025028 | AC009704 | 74571330 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_025028 | AC009704 | 74571330 | 3 |   |   | AP001405 | 194566837 | 1 | 18724 | 2805 | 0 | 21529 |
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