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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_019631 | AC010788 | 10596535 | 1 | chr18 | NT_019631 | AP001015 | 10602298 | 1 | 110320 | 4009 | 1118 | 115447 |
| S/G/Y/R/B/O |
NT_019631 | AC010788 | 10596535 | 1 | chr18 | NT_019631 | AC009890 | 10611726 | 3 | 155589 | 2509 | 6805 | 164903 |
| S/G/Y/R/B/O |
NT_019631 | AC010788 | 10596535 | 1 |   |   | AP001014 | 31446309 | 1 | 61333 | 11101 | 15997 | 88431 |
| S/G/Y/R/B/O |
NT_019631 | AP001015 | 10602298 | 1 | chr18 | NT_019631 | AC009890 | 10611726 | 3 | 99177 | 4084 | 65678 | 168939 |
| S/G/Y/R/B/O |
NT_019631 | AP001015 | 10602298 | 1 |   |   | AP001014 | 10767183 | 1 | 117354 | 11124 | 19637 | 148115 |
| S/G/Y/R/B/O |
NT_019631 | AC009890 | 10611726 | 3 | chr18 | NT_019631 | AC018746 | 10767183 | 1 | 21570 | 0 | 0 | 21570 |
| S/G/Y/R/B/O |
NT_019631 | AC009890 | 10611726 | 3 | chr18 | NT_019631 | AC010788 | 10596535 | 1 | 155589 | 2509 | 6805 | 164903 |
| S/G/Y/R/B/O |
NT_019631 | AC009890 | 10611726 | 3 |   |   | AP001014 | 10767183 | 1 | 109534 | 11124 | 14838 | 135496 |
| S/G/Y/R/B/O |
NT_019631 | AC018746 | 10767183 | 1 | chr18 | NT_019631 | AP001099 | 10797800 | 1 | 45192 | 1816 | 27969 | 74977 |
| S/G/Y/R/B/O |
NT_019631 | AC018746 | 10767183 | 1 | chr18 | NT_019631 | AC015677 | 10824136 | 1 | 71315 | 0 | 13304 | 84619 |
| S/G/Y/R/B/O |
NT_019631 | AC018746 | 10767183 | 1 | chr18 | NT_019631 | AP001283 | 10834879 | 1 | 14130 | 10004 | 20582 | 44716 |
| S/G/Y/R/B/O |
NT_019631 | AC018746 | 10767183 | 1 | chr18 | NT_019631 | AP001911 | 11222110 | 1 | 21459 | 3886 | 0 | 25345 |
| S/G/Y/R/B/O |
NT_019631 | AC018746 | 10767183 | 1 | chr18 | NT_019631 | AP002009 | 11227183 | 1 | 32029 | 0 | 4202 | 36231 |
| S/G/Y/R/B/O |
NT_019631 | AP001099 | 10797800 | 1 | chr18 | NT_019631 | AC015677 | 10824136 | 1 | 55167 | 1166 | 26911 | 83244 |
| S/G/Y/R/B/O |
NT_019631 | AP001099 | 10797800 | 1 | chr18 | NT_019631 | AP001283 | 10834879 | 1 | 57895 | 12693 | 11166 | 81754 |
| S/G/Y/R/B/O |
NT_019631 | AP001099 | 10797800 | 1 | chr18 | NT_019631 | AP001911 | 11222110 | 1 | 44201 | 1949 | 12071 | 58221 |
| S/G/Y/R/B/O |
NT_019631 | AP001099 | 10797800 | 1 | chr18 | NT_019631 | AP002009 | 11227183 | 1 | 38086 | 3150 | 8000 | 49236 |
| S/G/Y/R/B/O |
NT_019631 | AC015677 | 10824136 | 1 | chr18 | NT_019631 | AP001283 | 10834879 | 1 | 60181 | 4098 | 3237 | 67516 |
| S/G/Y/R/B/O |
NT_019631 | AC015677 | 10824136 | 1 | chr18 | NT_019631 | AC018746 | 10767183 | 1 | 71315 | 0 | 13304 | 84619 |
| S/G/Y/R/B/O |
NT_019631 | AC015677 | 10824136 | 1 | chr18 | NT_019631 | AP001180 | 11172378 | 1 | 20857 | 1748 | 1115 | 23720 |
| S/G/Y/R/B/O |
NT_019631 | AC015677 | 10824136 | 1 | chr18 | NT_019631 | AP001911 | 11222110 | 1 | 44057 | 5852 | 2994 | 52903 |
| S/G/Y/R/B/O |
NT_019631 | AC015677 | 10824136 | 1 | chr18 | NT_019631 | AP002009 | 11227183 | 1 | 29977 | 5159 | 3408 | 38544 |
| S/G/Y/R/B/O |
NT_019631 | AP001283 | 10834879 | 1 | chr18 | NT_019631 | AC015666 | 10841113 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_019631 | AP001283 | 10834879 | 1 | chr18 | NT_019631 | AC018746 | 10767183 | 1 | 14130 | 10004 | 20582 | 44716 |
| S/G/Y/R/B/O |
NT_019631 | AP001283 | 10834879 | 1 | chr18 | NT_019631 | AP001099 | 10797800 | 1 | 57895 | 12693 | 11166 | 81754 |
| S/G/Y/R/B/O |
NT_019631 | AP001283 | 10834879 | 1 | chr18 | NT_019631 | AP001180 | 11172378 | 1 | 34545 | 0 | 9993 | 44538 |
| S/G/Y/R/B/O |
NT_019631 | AP001283 | 10834879 | 1 | chr18 | NT_019631 | AP001911 | 11222110 | 1 | 63347 | 1923 | 3206 | 68476 |
| S/G/Y/R/B/O |
NT_019631 | AP001283 | 10834879 | 1 | chr18 | NT_019631 | AP002009 | 11227183 | 1 | 43963 | 10687 | 11449 | 66099 |
| S/G/Y/R/B/O |
NT_019631 | AC015666 | 10841113 | 1 | chr18 | NT_019631 | AC023083 | 10847582 | 1 | 40484 | 28072 | 7270 | 75826 |
| S/G/Y/R/B/O |
NT_019631 | AC015666 | 10841113 | 1 | chr18 | NT_019631 | AC027689 | 10916429 | 3 | 63773 | 21037 | 6366 | 91176 |
| S/G/Y/R/B/O |
NT_019631 | AC023083 | 10847582 | 1 | chr18 | NT_019631 | AC073948 | 10860372 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_019631 | AC023083 | 10847582 | 1 | chr18 | NT_019631 | AC023569 | 11091634 | 1 | 26918 | 4572 | 0 | 31490 |
| S/G/Y/R/B/O |
NT_019631 | AC023083 | 10847582 | 1 | chr18 | NT_019631 | AC027689 | 10916429 | 3 | 113166 | 4671 | 8355 | 126192 |
| S/G/Y/R/B/O |
NT_019631 | AC073948 | 10860372 | 1 | chr18 | NT_019631 | AC027689 | 10916429 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_019631 | AC073948 | 10860372 | 1 | chr18 | NT_019631 | AC023569 | 11091634 | 1 | 38154 | 7505 | 0 | 45659 |
| S/G/Y/R/B/O |
NT_019631 | AC073948 | 10860372 | 1 | chr18 | NT_019631 | AP001180 | 11172378 | 1 | 31528 | 1637 | 1513 | 34678 |
| S/G/Y/R/B/O |
NT_019631 | AC027689 | 10916429 | 3 | chr18 | NT_019631 | AC023569 | 11091634 | 1 | 97587 | 7237 | 1480 | 106304 |
| S/G/Y/R/B/O |
NT_019631 | AC027689 | 10916429 | 3 | chr18 | NT_019631 | AC015666 | 10841113 | 1 | 63773 | 21037 | 6366 | 91176 |
| S/G/Y/R/B/O |
NT_019631 | AC027689 | 10916429 | 3 | chr18 | NT_019631 | AC023083 | 10847582 | 1 | 113166 | 4671 | 8355 | 126192 |
| S/G/Y/R/B/O |
NT_019631 | AC023569 | 11091634 | 1 | chr18 | NT_019631 | AP001180 | 11172378 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_019631 | AC023569 | 11091634 | 1 | chr18 | NT_019631 | AC023083 | 10847582 | 1 | 26918 | 4572 | 0 | 31490 |
| S/G/Y/R/B/O |
NT_019631 | AC023569 | 11091634 | 1 | chr18 | NT_019631 | AC073948 | 10860372 | 1 | 38154 | 7505 | 0 | 45659 |
| S/G/Y/R/B/O |
NT_019631 | AP001180 | 11172378 | 1 | chr18 | NT_019631 | AP001911 | 11222110 | 1 | 68789 | 7092 | 28031 | 103912 |
| S/G/Y/R/B/O |
NT_019631 | AP001180 | 11172378 | 1 | chr18 | NT_019631 | AC015677 | 10824136 | 1 | 20857 | 1748 | 1115 | 23720 |
| S/G/Y/R/B/O |
NT_019631 | AP001180 | 11172378 | 1 | chr18 | NT_019631 | AC073948 | 10860372 | 1 | 31528 | 1637 | 1513 | 34678 |
| S/G/Y/R/B/O |
NT_019631 | AP001180 | 11172378 | 1 | chr18 | NT_019631 | AP001283 | 10834879 | 1 | 34545 | 0 | 9993 | 44538 |
| S/G/Y/R/B/O |
NT_019631 | AP001180 | 11172378 | 1 | chr18 | NT_019631 | AP002009 | 11227183 | 1 | 82623 | 11003 | 5681 | 99307 |
| S/G/Y/R/B/O |
NT_019631 | AP001911 | 11222110 | 1 | chr18 | NT_019631 | AP002009 | 11227183 | 1 | 74441 | 3674 | 10626 | 88741 |
| S/G/Y/R/B/O |
NT_019631 | AP001911 | 11222110 | 1 | chr18 | NT_019631 | AC015677 | 10824136 | 1 | 44057 | 5852 | 2994 | 52903 |
| S/G/Y/R/B/O |
NT_019631 | AP001911 | 11222110 | 1 | chr18 | NT_019631 | AC018746 | 10767183 | 1 | 21459 | 3886 | 0 | 25345 |
| S/G/Y/R/B/O |
NT_019631 | AP001911 | 11222110 | 1 | chr18 | NT_019631 | AP001099 | 10797800 | 1 | 44201 | 1949 | 12071 | 58221 |
| S/G/Y/R/B/O |
NT_019631 | AP001911 | 11222110 | 1 | chr18 | NT_019631 | AP001283 | 10834879 | 1 | 63347 | 1923 | 3206 | 68476 |
| S/G/Y/R/B/O |
NT_019631 | AP002009 | 11227183 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_019631 | AP002009 | 11227183 | 1 | chr18 | NT_019631 | AC015677 | 10824136 | 1 | 29977 | 5159 | 3408 | 38544 |
| S/G/Y/R/B/O |
NT_019631 | AP002009 | 11227183 | 1 | chr18 | NT_019631 | AC018746 | 10767183 | 1 | 32029 | 0 | 4202 | 36231 |
| S/G/Y/R/B/O |
NT_019631 | AP002009 | 11227183 | 1 | chr18 | NT_019631 | AP001099 | 10797800 | 1 | 38086 | 3150 | 8000 | 49236 |
| S/G/Y/R/B/O |
NT_019631 | AP002009 | 11227183 | 1 | chr18 | NT_019631 | AP001180 | 11172378 | 1 | 82623 | 11003 | 5681 | 99307 |
| S/G/Y/R/B/O |
NT_019631 | AP002009 | 11227183 | 1 | chr18 | NT_019631 | AP001283 | 10834879 | 1 | 43963 | 10687 | 11449 | 66099 |
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