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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_033908 | AC040963 | 58068890 | 1 | chr18 | NT_033908 | AC104365 | 58081971 | 2 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033908 | AC040963 | 58068890 | 1 | chr18 | NT_033908 | AC021241 | 58419293 | 1 | 43635 | 0 | 0 | 43635 |
| S/G/Y/R/B/O |
NT_033908 | AC040963 | 58068890 | 1 | chr18 | NT_033908 | AC090233 | 58204029 | 1 | 37811 | 0 | 0 | 37811 |
| S/G/Y/R/B/O |
NT_033908 | AC040963 | 58068890 | 1 |   |   | AP002389 | 58204029 | 1 | 27974 | 2964 | 1346 | 32284 |
| S/G/Y/R/B/O |
NT_033908 | AC104365 | 58081971 | 2 | chr18 | NT_033908 | AC027554 | 58167768 | 1 | 82595 | 4225 | 9403 | 96223 |
| S/G/Y/R/B/O |
NT_033908 | AC104365 | 58081971 | 2 | chr18 | NT_033908 | AC090233 | 58204029 | 1 | 35780 | 0 | 0 | 35780 |
| S/G/Y/R/B/O |
NT_033908 | AC104365 | 58081971 | 2 |   |   | AP002389 | 58204029 | 1 | 12519 | 2523 | 3261 | 18303 |
| S/G/Y/R/B/O |
NT_033908 | AC027554 | 58167768 | 1 | chr18 | NT_033908 | AC090233 | 58204029 | 1 | 76298 | 8804 | 3896 | 88998 |
| S/G/Y/R/B/O |
NT_033908 | AC027554 | 58167768 | 1 |   |   | AP002389 | 58081971 | 1 | 15351 | 2274 | 5569 | 23194 |
| S/G/Y/R/B/O |
NT_033908 | AC090233 | 58204029 | 1 | chr18 | NT_033908 | AC021241 | 58419293 | 1 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033908 | AC090233 | 58204029 | 1 | chr18 | NT_033908 | AC040963 | 58068890 | 1 | 37811 | 0 | 0 | 37811 |
| S/G/Y/R/B/O |
NT_033908 | AC090233 | 58204029 | 1 | chr18 | NT_033908 | AC104365 | 58081971 | 2 | 35780 | 0 | 0 | 35780 |
| S/G/Y/R/B/O |
NT_033908 | AC090233 | 58204029 | 1 |   |   | AP002389 | 58081971 | 1 | 84378 | 10067 | 4607 | 99052 |
| S/G/Y/R/B/O |
NT_033908 | AC021241 | 58419293 | 1 | chr18 | NT_033908 | AC067859 | 58504472 | 3 | 97160 | 0 | 0 | 97160 |
| S/G/Y/R/B/O |
NT_033908 | AC021241 | 58419293 | 1 | chr18 | NT_033908 | AC040963 | 58068890 | 1 | 43635 | 0 | 0 | 43635 |
| S/G/Y/R/B/O |
NT_033908 | AC067859 | 58504472 | 3 | chr18 | NT_033908 | AP001536 | 58692543 | 1 | 55412 | 9414 | 1240 | 66066 |
| S/G/Y/R/B/O |
NT_033908 | AP001536 | 58692543 | 1 | chr18 | NT_033908 | AC016229 | 58694072 | 2 | 74177 | 2385 | 1025 | 77587 |
| S/G/Y/R/B/O |
NT_033908 | AP001536 | 58692543 | 1 | chr18 | NT_033908 | AP001901 | 58804175 | 1 | 59984 | 2189 | 1015 | 63188 |
| S/G/Y/R/B/O |
NT_033908 | AC016229 | 58694072 | 2 | chr18 | NT_033908 | AP001901 | 58804175 | 1 | 148126 | 0 | 14171 | 162297 |
| S/G/Y/R/B/O |
NT_033908 | AC016229 | 58694072 | 2 | chr18 | NT_033908 | AC090213 | 58837192 | 3 | 27580 | 0 | 0 | 27580 |
| S/G/Y/R/B/O |
NT_033908 | AC016229 | 58694072 | 2 |   |   | AP002406 | 58804175 | 1 | 30024 | 0 | 0 | 30024 |
| S/G/Y/R/B/O |
NT_033908 | AP001901 | 58804175 | 1 | chr18 | NT_033908 | AC090213 | 58837192 | 3 | 25880 | 0 | 12966 | 38846 |
| S/G/Y/R/B/O |
NT_033908 | AP001901 | 58804175 | 1 | chr18 | NT_033908 | AP001536 | 58692543 | 1 | 59984 | 2189 | 1015 | 63188 |
| S/G/Y/R/B/O |
NT_033908 | AP001901 | 58804175 | 1 |   |   | AP002406 | 58692543 | 1 | 15500 | 0 | 13088 | 28588 |
| S/G/Y/R/B/O |
NT_033908 | AC090213 | 58837192 | 3 | chr18 | NT_033908 | AC010776 | 58905054 | 3 | 102468 | 0 | 0 | 102468 |
| S/G/Y/R/B/O |
NT_033908 | AC090213 | 58837192 | 3 | chr18 | NT_033908 | AC016229 | 58694072 | 2 | 27580 | 0 | 0 | 27580 |
| S/G/Y/R/B/O |
NT_033908 | AC090213 | 58837192 | 3 |   |   | AP002406 | 58804175 | 1 | 133596 | 2474 | 29224 | 165294 |
| S/G/Y/R/B/O |
NT_033908 | AC010776 | 58905054 | 3 | chr18 | NT_033908 | AC098847 | 59086306 | 3 | 59163 | 0 | 0 | 59163 |
| S/G/Y/R/B/O |
NT_033908 | AC010776 | 58905054 | 3 |   |   | AP002406 | 59086306 | 1 | 54193 | 0 | 39845 | 94038 |
| S/G/Y/R/B/O |
NT_033908 | AC010776 | 58905054 | 3 |   |   | AP002477 | 59086306 | 1 | 37107 | 1698 | 6005 | 44810 |
| S/G/Y/R/B/O |
NT_033908 | AC098847 | 59086306 | 3 | chr18 | NT_033908 | AC107990 | 59233714 | 2 | 80485 | 0 | 0 | 80485 |
| S/G/Y/R/B/O |
NT_033908 | AC098847 | 59086306 | 3 |   |   | AP001776 | 68570698 | 1 | 122036 | 1673 | 22773 | 146482 |
| S/G/Y/R/B/O |
NT_033908 | AC098847 | 59086306 | 3 |   |   | AP002477 | 68570698 | 1 | 125273 | 16403 | 24934 | 166610 |
| S/G/Y/R/B/O |
NT_033908 | AC107990 | 59233714 | 2 | chr18 | NT_033908 | AC090377 | 59264486 | 2 | 44795 | 0 | 31515 | 76310 |
| S/G/Y/R/B/O |
NT_033908 | AC107990 | 59233714 | 2 |   |   | AC015731 | 122885771 | 1 | 41922 | 0 | 0 | 41922 |
| S/G/Y/R/B/O |
NT_033908 | AC107990 | 59233714 | 2 |   |   | AP001549 | 68570698 | 1 | 30183 | 2897 | 3441 | 36521 |
| S/G/Y/R/B/O |
NT_033908 | AC107990 | 59233714 | 2 |   |   | AP001776 | 68570698 | 1 | 118065 | 3682 | 1392 | 123139 |
| S/G/Y/R/B/O |
NT_033908 | AC107990 | 59233714 | 2 |   |   | AP002477 | 68570698 | 1 | 34955 | 8408 | 14363 | 57726 |
| S/G/Y/R/B/O |
NT_033908 | AC090377 | 59264486 | 2 | chr18 | NT_033908 | AC090771 | 59429378 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_033908 | AC090377 | 59264486 | 2 |   |   | AC015731 | 68570698 | 1 | 150781 | 0 | 0 | 150781 |
| S/G/Y/R/B/O |
NT_033908 | AC090377 | 59264486 | 2 |   |   | AP001549 | 59704368 | 1 | 117792 | 4683 | 14486 | 136961 |
| S/G/Y/R/B/O |
NT_033908 | AC090377 | 59264486 | 2 |   |   | AP001776 | 59704368 | 1 | 16382 | 1584 | 0 | 17966 |
| S/G/Y/R/B/O |
NT_033908 | AC090771 | 59429378 | 3 | chr18 | NT_033908 | AC090621 | 59615407 | 1 | 100676 | 0 | 0 | 100676 |
| S/G/Y/R/B/O |
NT_033908 | AC090771 | 59429378 | 3 | chr18 | NT_033908 | AC021018 | 59667702 | 1 | 90799 | 0 | 2001 | 92800 |
| S/G/Y/R/B/O |
NT_033908 | AC090771 | 59429378 | 3 | chr18 | NT_033908 | AP001546 | 59704368 | 1 | 145118 | 0 | 40854 | 185972 |
| S/G/Y/R/B/O |
NT_033908 | AC090621 | 59615407 | 1 | chr18 | NT_033908 | AC021018 | 59667702 | 1 | 177827 | 0 | 3597 | 181424 |
| S/G/Y/R/B/O |
NT_033908 | AC090621 | 59615407 | 1 | chr18 | NT_033908 | AP001546 | 59704368 | 1 | 88954 | 0 | 0 | 88954 |
| S/G/Y/R/B/O |
NT_033908 | AC021018 | 59667702 | 1 | chr18 | NT_033908 | AP001546 | 59704368 | 1 | 55020 | 1958 | 0 | 56978 |
| S/G/Y/R/B/O |
NT_033908 | AC021018 | 59667702 | 1 | chr18 | NT_033908 | AC090771 | 59429378 | 3 | 90799 | 0 | 2001 | 92800 |
| S/G/Y/R/B/O |
NT_033908 | AP001546 | 59704368 | 1 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_033908 | AP001546 | 59704368 | 1 | chr18 | NT_033908 | AC090621 | 59615407 | 1 | 88954 | 0 | 0 | 88954 |
| S/G/Y/R/B/O |
NT_033908 | AP001546 | 59704368 | 1 | chr18 | NT_033908 | AC090771 | 59429378 | 3 | 145118 | 0 | 40854 | 185972 |
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